Array 1 8000-5386 **** Predicted by CRISPRDetect 2.4 *** >NZ_RQRE01000003.1 Listeria monocytogenes strain ICDC-LM3047 Scaffold3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 7999 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 7933 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 7867 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 7801 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 7735 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 7669 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 7603 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 7537 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 7470 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 7404 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 7338 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 7272 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 7206 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 7140 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 7074 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 7008 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 6942 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 6876 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 6810 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 6744 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 6678 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 6612 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 6546 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 6480 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 6414 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 6348 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 6282 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 6216 36 100.0 30 .................................... TTGATGAGAATCTATACAGGTACTTAACCG 6150 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 6084 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 6018 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 5952 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 5886 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 5820 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 5754 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 5688 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 5622 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 5556 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 5490 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 5424 36 86.1 0 .............A.....C.....A.A.......G | C,A,T [5389,5392,5397] ========== ====== ====== ====== ==================================== =============================== ================== 40 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : ATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //