Array 1 56499-58846 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVL01000015.1 Bacteroides faecis strain OM02-29 OM02-29.Scaf15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 56499 47 100.0 29 ............................................... GATGCAAAAGCGGGAAGGAACCACTTCCG 56575 47 100.0 29 ............................................... CGGGTGCAGATGGCAAACCGGGAGAGGAT 56651 47 100.0 30 ............................................... GCTAACAAGTGAAGTATTAGACTTAATCAT 56728 47 100.0 29 ............................................... CGGGTGCAGATGGCAAACCGGGAGAGGAT 56804 47 100.0 30 ............................................... GCTAACAAGTGAAGTATTAGACTTAATCAT 56881 47 100.0 30 ............................................... AGAAAGACCTCACGTATATAAAAGTTTTAT 56958 47 100.0 29 ............................................... CAGTCTGCTTGCGATGTTCTCCATTCGCG 57034 47 100.0 30 ............................................... ATCATACTCTTTCATAGTATATCTACTTGT 57111 47 100.0 29 ............................................... CGAGCCTTTCGGGTGCTGTGAGCGCAGCG 57187 47 100.0 30 ............................................... TCGGGTCGGTGCCGGATACTTTGCACTAAT 57264 47 100.0 29 ............................................... GATATTAATTAAATGATGAATACTTAGCT 57340 47 100.0 30 ............................................... AAATGTTGTAATGTCTTTTCTACCTGCTAG 57417 47 100.0 30 ............................................... ACAACAACAAGCAATGGGACTGCAATTAAA 57494 47 100.0 30 ............................................... ACTAGTGTTCTCATATCCTCGGCACTTCCT 57571 47 100.0 30 ............................................... CAAAAACGAATATTTCCCCATCAGCATTAT 57648 47 100.0 30 ............................................... ACGAACACTACATGCGAAAAGGGCGGTAGT 57725 47 100.0 30 ............................................... CGAGCGTCGGTTGACTTAGTGTTTTGTTTA 57802 47 100.0 30 ............................................... CAAACCAAATTATTCAACGATGGATAAAAA 57879 47 100.0 30 ............................................... AGACACTATTCAATAACTGGATCGACGGAT 57956 47 100.0 30 ............................................... CAAACCAAATTATTCAACGATGGATAAGAA 58033 47 100.0 29 ............................................... GCGAATCTAAATTTCTTCGTAAACGTTTA 58109 47 100.0 30 ............................................... AGAGTCAGCAGCAACAGCAAAGATAGAATC 58186 47 100.0 30 ............................................... TGTGAATCTAAATTTCTTCGTAAGCGCTTA 58263 47 100.0 29 ............................................... ACAAAAGAGACGGCAAATTACATCAAAGT 58339 47 100.0 30 ............................................... AGAAACAACGCAATCTTCTTGGATAAACTA 58416 47 100.0 30 ............................................... CAAAAACGAACATCTCATCATCGGCTCTAT 58493 47 100.0 30 ............................................... ACATTTCGGGAGTTAAAGTGGCACATGTAT 58570 47 100.0 29 ............................................... TCACAATTAATCAAAAGCTGATCGGTTTC 58646 47 100.0 30 ............................................... ATAACTTGCAACAAGTATCACTATCTGAGA 58723 47 100.0 30 ............................................... CTATTTATGATTACGAAAAGATCAACCGTG 58800 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 31 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : TAAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCGCCATCTCTTTTTTTACGCAACTTGCTTT # Right flank : CCGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAAGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 139968-138535 **** Predicted by CRISPRDetect 2.4 *** >NZ_QSVL01000013.1 Bacteroides faecis strain OM02-29 OM02-29.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 139967 29 100.0 35 ............................. ATAAGATAGAAGCGGTATTCTGCGATACAGGCTGG 139903 29 100.0 35 ............................. AAGTCTTTGGGATCTCTATCTAATGAGTCTGGATC 139839 29 100.0 35 ............................. AAAGGACGGTAAATGAAACGGAACAGAACGAGAGT 139775 29 100.0 36 ............................. CAAGTTAGCTTCAGATTTGCAGCTGGGCAAACGCAG 139710 29 100.0 36 ............................. AGGAGCTGCTTTATATCTATGGTATCGGTGGTACGA 139645 29 100.0 35 ............................. GAATTCCTACGACCATGAGCGCAAGCATCTGGAAG 139581 29 100.0 36 ............................. TAATATCCTTTCTATTTGTTTTAAAGGGTAGAGCTA 139516 29 100.0 34 ............................. ACTAATGAAACATACTGGGAAGATGTGCTCTGGT 139453 29 100.0 35 ............................. AGTGATACCGGTCGTCGGCCTGTGAAATCAAATCA 139389 29 100.0 34 ............................. ATGGTTTCAAGACAGACCTCATACATACCGATAC 139326 29 100.0 34 ............................. GGGATTAAGAGTTGAGACTACTACCGCGGTGAAA 139263 29 100.0 35 ............................. ATGTTATTCAATTGAATGTTGTGACCTCCTACAAA 139199 29 100.0 32 ............................. CAATATGCCATGGAGCTTTATGCGGTTGACAA 139138 29 100.0 34 ............................. ATTCATAAATAAATCCCTATGTCTTTCCGATTTT 139075 29 100.0 34 ............................. ACGATAGGCAATGCAGTAGCGAGATATGAGAATG 139012 29 100.0 35 ............................. ATCACATGGACAACGAACATGCCTGGACAGGAAGC 138948 29 100.0 34 ............................. ACCAATGAAGCATACTGGGAAGATGTGCTCTGGT 138885 29 100.0 37 ............................. ATAAAAAGGATTAGTTCCCGCGCCAGTACCATTATTA 138819 29 100.0 35 ............................. TCGACTAATGCAGAGAAAGATAAATCAGACTCGAA 138755 29 100.0 34 ............................. TATATAAGAAAAGTCAGTCCATTTTTTCATTATC 138692 29 100.0 36 ............................. ACTCCTGCAACGCTAGTAGGTAAATTGTCAACCGCT 138627 29 96.6 34 .................C........... CTGCTTTTCCCGCTGAAATATACACCCAAATCCG 138564 29 86.2 0 .................CAA......G.. | T [138540] ========== ====== ====== ====== ============================= ===================================== ================== 23 29 99.3 35 GTATTAATTGTACCTAGTGGAATTGAAAC # Left flank : CCTTTTAAGATGTATTGGTAGAGTATGTATGTCATTTTAGTATATGATTGTGGTGAAAGAAGGGTGGCTAAAATGTTGAAACTGTGTCGTAAATATTTAAATTGGATACAGAATTCTGTTTTTGAGGGTGAAATATCTGAAGTACGCCTAAAAAAACTTCTATATTCAGCTAAAGAATTTATGGATGAATCTGAAGATAGTATTATTATTTTCAAAGGACCTAATCATAGCTCTTTGGAAAAAGAAGTAGTGGGAAAAGAACGGTGTAGTATAGATAATTTTCTGTAATTTAGTTGTCGGAGACTTTAGTAATGTTTCCTTTTTAAGGAAAATTCTTCTTAAGAGTTCTTTGACTTGTTGATTTACAGCAATATAAGTGTGGTGTCGATCTCCAGCACTTTTTGTACTTTTAGGGATCGACACTATTTTTGACCTTTAAATATCTTTTGGGGGATTGTAACTCATTCATTTTAAGTGGTCTTTGGGGGATTGATGGTAGA # Right flank : ATATTTCAATTGTTAATAATATATAAGACTTTTCTCTTATATATGGTTCAAATTACGTTTTGAATCTGCAAGGTACACATATTAATACAGTTGTAGGCCTTTATTGATTGTGGGAATATTGTTTTGTGTAATTACTAGATGAATAGTAGTTTTGGCTTTTTATTATTCTGTTATTATAGTTTGCGTAATAATGAAGATGATCCATTTTTACCACTCATAAGAAATACTTACCTGAGGTACCCATTCCCATTTCTTTCGTATGGTGTTGTATTGATACCGCACATCGGTCTTCAATTTCCAGCCTTTATTTATTTTAAGGATAATGTTGCTGCCCAAAGTAGTTGGTATCACTTCAGATGAAAGTCCCCGATATCTTCGGGCATCCAGATTTTGTTCACCATATATGCTGAGAGACCATTTTTTAGAGATGCTATAATCCATCTGAACTTCAACATGAAAATGGTCCGGATTTTCTCCAAAGTTACTTTTACTGTGCAAAG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTAGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : NA //