Array 1 902-2191 **** Predicted by CRISPRDetect 2.4 *** >NZ_FZYH01000020.1 Neisseria meningitidis strain Neisseria meningitidis isolate R073, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 902 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 968 36 100.0 30 .................................... AAACTCAACGCATCTAACATAGTTCACACT 1034 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 1100 36 100.0 30 .................................... TATCATGATGAGCATATTTATGAAGAGGTA 1166 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 1232 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 1298 36 100.0 30 .................................... ATAAATCAATACCGTGAAAACCTCATGTGT 1364 36 100.0 30 .................................... AAAAACTTTTTAGGGGGGTCGGAAAAATAC 1430 36 100.0 30 .................................... ATTTATATTATTTTTGATTTTGATTTTTTT 1496 36 100.0 30 .................................... ATAAAAAATAAAAAAAACCAAAAATAATAG 1562 36 100.0 30 .................................... ACAAATCAATACCATGAAAACCCCATGCGT 1628 36 100.0 30 .................................... AAATTATACCAATGGCGAAAATCTCGGGCG 1694 36 100.0 30 .................................... CTTTTGCCGCCATCGACGCAGCCGACAGGG 1760 36 100.0 30 .................................... ACTTAATTTATTCAGTTCTTCTTTATGCCA 1826 36 100.0 30 .................................... TTCGTACCCAAAAAATCGACCGCGTAACGG 1892 36 100.0 30 .................................... AATATTTTTTTATAAATTGCCATCAGAACG 1958 36 100.0 30 .................................... CGTAGGGATGTGTGTTAAATCTACCGTTTT 2024 36 100.0 30 .................................... CGCCCCCATGCTGATGGTGCGCCTCGCCGA 2090 36 100.0 30 .................................... ACATCTTCGCCGACATAACCTGCTTCGGTC 2156 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : GGAAACGGTCGATGTGTTTGGCAATCATGGCTTGGGCGGTTTGTTGAAAGAAGGTGCTCATGAGAAATCCCCTAAATGTCTTGGTGGGAATTTAGGGGATTTTGGGGAATTTTGCAAAGGTCTCATTTTGCAAGATTTTAGTTTAATCATCAAACAGGGAACAGCAAAAATCCCCGCTGCAACGGGGATTTTTGTTCGGCTCTCGCCTGTGTGATTAACTTCACTAGGAGAAGCTAAAATGCTTAAATTCCTTATGCGTGGGAAAAAGTTGCTGCTGTCCGTTGAAGTGAACCACAAGTTCATTTTAGCGGTTGCTTTGCTGTTAAGTCAATGCAGTAGCTAACCCGACCACAATCAAAAAAACGCAAGTTTTCCGCCTACTCTGTGAGTGGGCGGTTTTTTCTTATTTCAAATCTGTGACACAATATCTGTCGCCTTTCTTGCCATAATTGCACTGTGTCTCAATGACTTTAACGCACGTTCGCTTATCGCAACGGCTG # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCGGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //