Array 1 60-1449 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFEI01000001.1 Listeria monocytogenes strain 2842STDY5753989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 60 29 100.0 35 ............................. TTGATAACATCTTTTACTGAAAGACCTGCCTTTAA 124 29 100.0 34 ............................. TTGGATGCAAAAACTTTAATAGCCTCTGCATCAA 187 29 100.0 35 ............................. TTATCTAACCAACCCCGCAAAACAGTATCAACAGT 251 29 100.0 37 ............................. TTGGTTTATCAAGATGAATGCAACACACTTGCGCCAT 317 29 100.0 36 ............................. AAGAAACGCAGGAAGAAGCTCCACGCCGCAAGCGTC 382 29 100.0 36 ............................. GTTGTTAATGAAGAAGGAAAAGGTATTTTGAAATTC 447 29 100.0 35 ............................. ATTTTATTACGGCTGGTGAGTTGTCCGCCGCACTA 511 29 100.0 34 ............................. GTCGATACAATCAACAAAGAAGCGCTAGATATGA 574 29 100.0 35 ............................. ATGAGTGCATCATAACGTTTTGCTACATAAGAAAT 638 29 100.0 36 ............................. AAAAGTTCAAGAATTTGAACCATCCATTTAGCCCAC 703 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 769 29 100.0 35 ............................. ATTACATTTATTAAACAATGTACAGGTTGAATTAA 833 29 100.0 37 ............................. CTTTTTATATATTGTGCGCTTAACTTAGTTGTTAAGA 899 29 100.0 36 ............................. TTTTTTGTAGCGGAGGTGTACAATGCCGAAAGTGAC 964 29 100.0 36 ............................. CCCTGTAGGATTAATATACAAAGGTTCTCGTTTTTC 1029 29 100.0 35 ............................. AATGCCGAAAGGTTCGCTTTCATTTCGCTATTCAC 1093 29 100.0 37 ............................. AAAATAATCATTAATGCAAACGCAATACAAATGACTG 1159 29 100.0 38 ............................. GTGGTAACAGCGTTCTTATTTCCTGGCGGAGCGCTTCC 1226 29 100.0 34 ............................. TTGGTCCTTCCTATCCCTCCACCTCTTTGTTTTT 1289 29 100.0 37 ............................. TCGTTCGACGGCTTAGACAACCATCACGCTTCTTTAA 1355 29 100.0 36 ............................. CCTAATACACCTAAACTACTCTTATATATAAAAACA 1420 29 93.1 0 .......................A....C | C [1443] ========== ====== ====== ====== ============================= ====================================== ================== 22 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : AACTACTTATTATGAAATGTAAATAATGCCGAAAGGTTCGCTTTCATTTCGCTATTCACG # Right flank : CGTCTTCTTAAAATTTAAACCCAAAAAATAAAAAAGGCCAGGACCCAAATCCAAGCCTTTTCTTGCAACACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAGCTCAAAAAGAAAATCTGCACAGTTTCCGCAAACCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGTACTTTTTTATTCGCAAGTAATTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 50575-50723 **** Predicted by CRISPRDetect 2.4 *** >NZ_FFEI01000007.1 Listeria monocytogenes strain 2842STDY5753989, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 50575 29 100.0 36 ............................. CTCTTCTCGTGTCGCTTGTTTTGCTCATTCCGCCAC 50640 29 100.0 37 ............................. ATAAATTTCGCTACTTTATCAATCATTCCAAATCTCC 50706 18 62.1 0 ..................----------- | ========== ====== ====== ====== ============================= ===================================== ================== 3 29 87.4 37 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATAAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTTGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAAGCGTAAAATAGAGCGG # Right flank : | # Questionable array : NO Score: 4.73 # Score Detail : 1:0, 2:3, 3:0, 4:0.37, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //