Array 1 27267-26451 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000101.1 Mastigocoleus testarum BC008 Contig-34, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 27266 37 100.0 34 ..................................... ATCCAATTCAAATTCGTGGCGCGTAACCTGAACT 27195 37 100.0 34 ..................................... AAACTGGTGTCCTTCTGTTATATCTCCTGCTATA 27124 37 100.0 34 ..................................... CTCAAACTAGCATCTGAGGTCAGTGCTGTGGCAG 27053 37 100.0 33 ..................................... GATCGCATTGGCGATATGGATTCACTGTTTGAG 26983 37 100.0 34 ..................................... AACTGTAGTTACAGTAAGCGTTTTCCCTTCGTAG 26912 37 100.0 31 ..................................... ATTTTACTTAATTTTTCTAGCTTACCTCCAC 26844 37 100.0 36 ..................................... TTACCAAAGTACACGGCGCGATCGCACCCGGATTTA 26771 37 100.0 34 ..................................... CCGATCGCTTTAATATCGCGACCTTTTAAAGCGC 26700 37 100.0 31 ..................................... TTACTATATCCCTTTAGGTTGGGACACAGGG 26632 37 100.0 34 ..................................... TTTAAAGATGAAAAAGATAACGCTCCTATGCTTT 26561 37 100.0 33 ..................................... GATGAAAAATGGCGAAACCAAGTTGGCGGATGA 26491 37 94.6 0 ............C...........T............ | AAAC [26472] ========== ====== ====== ====== ===================================== ==================================== ================== 12 37 99.5 34 GTTGAAACTTACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAAACCGTTTTAGATAGATTGTGAAGTTGGAGTTAGAGCTTATGTCGTTCATTCAAATATCATCTGAGTTATCTCATAGTTTACTCGTTATAAATTTTAAAAACTTGACATAAATTGCTGTATTTCTAGCCGTACAGAAGATTTACAATCAAGTTTGTAGTTCTACTTTATATTCGTGAAGAAGGTTTGCGACTAGATTTTTTTGTACATGGGATGAAAGCGTATTCTTTGCTTGACACTTGCTGCTCTTTTGCGCCAACCTGTGGGTGTTGGAAATCAATTGCTAGATTTAGCGGCTGAAATCTTTACTGTATCTGGGTTAGAGCGATTTTTAACTCGAAACAGGTTGGCGCAACTCTTGAAAGTATTGTCGTATAAGGATTTGAGCAATTTTGTTGACTTCTACTCTTGACATTCCTTCGGCTGAAACAGTATTTTTGGATGAGGTTGGCGCAAATGTACCTTGAAAACCAAATATATTGAGGCTTCCACAGCGAGCT # Right flank : GCGATCAAAAACAAAATAGCCGATCGCTAACTCAAAAAACTAGCAATCGGCTATTGAAAAATTAACATTAAAATTTTTCAATTCTAATTCAACGCTTCTGCACCACCAACAACCTCAAGAATTTCTTGGGTAATTGCAGCTTGTCGCGCTTTGTTATACGACAATGTTAAAGTACCAATCAATTCGCTAGCGTTATCACTCGCATTACTCATTGCTGTCATCCGGGCTGCTAATTCACTGGCTGCAGATTCTTGCAATGCTCGTAATAATTGGTTACTCAAATATAGTGGTAGTAAAGAATCCAAAATCTGCACCGGATCTTGTTCAAAAATCATATCCCGAGGGAAAGCACGAGTTTCAGTCTTGACTGCGTCCCGTTCAACTTCAAATTGTCCCCCACGGGTAGTGAGACGGAAAATTTCATCATCTGCAGCTTCTAAACCTTGAGCATCGAGGGGTAACAAGGTTTGTACCACAGGACGAGAACTAACCAAGGAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTTACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 75364-74959 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000111.1 Mastigocoleus testarum BC008 Contig-43, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 75363 38 100.0 34 ...................................... AGAATATTTCTTATTTAATTGCATGCGATCGCGA 75291 38 100.0 37 ...................................... GCTTCCCACTTGGTCTATGTTGCCACTACCAACCCAA 75216 38 100.0 33 ...................................... CCTTCGTTGACCCATATTGCAAAATCGTTAGCC 75145 38 100.0 38 ...................................... CTTTCATTTCACAATCAAATATTTTGGCTAATCTCTTA 75069 38 100.0 35 ...................................... AGGAATAATTATCGAGAAGAGAAAGACAGCGTAGT 74996 38 94.7 0 T....................................A | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 99.1 36 AATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : TCAGGACGTTGAAAAGTTATCTGCTGTTTTAGAAGCGATAGAAACTGTAGATTCGCTAGAGGAACTGAGGAAGGTTTATCAGTCAGCAAGCGAGTAGTTCCAGTTACAAATTTTTATGGACTTCCAAAATTAGGATTTCCAAAATTAGAATTTCTAAAATTAAATATTCAATTTGCTAGAGTAGGGTGTGTTAGGCGTTAGCCGTAACGCACCGAAAAAAATATAATCTTGTTATCTGAAATTTACGATTTTTGCGCCAACCTGTGGGTGTTGAAAATGAGTTGCTAAATTTAGTGGCTGAAACGCTTGCTCTGTATGGCTTTGAGCTATTTTTGCTTGGTTTGAGGTTGGCGCAACGCTCGAAAGCTTTTATTTGTAAAGGTTGTAGCGATTTTTCTGGAGGTCGTACTTGACAAGCAATCGGCTGAAACAGTATTTTATATTTGATTGGCGCAAATGTACCTTGAAAACTGCATATAGCAAGGCTTCTATTTTGAGCG # Right flank : GTCCCCCAAAATTGGGGGATTGAGGGGGCTAATAACTAATCTGCTCCCTCAATAGGCGCAAAACCTTGACGCTGAATATTCTCCGTAATCGTACGCGGTTCGAGGAATTGTAACAAATAATCTGGACCGCCAGCTTTAAAACCGACACCAGAAAGTTTAAAACCACCGAAGGGTTGTCGCGATACTATCGCCCCAGTAGTATTACGGTTAATATACAAATTACCTACTTCAAAATCTTCCTCCGCTTGCTCAATATGGGAAGGAGTACGAGAATAAAGCCCGCCAGTTAAAGCATAATTAGTATTATTTGCAACTTCTAATCCTTGCTGAAAATCTTTAACTTTAATTACTGCTACCACCGGACCAAAAATTTCTTCCTGAGCTATGACCGCGTCGGGTGTAACATCTGCAAAGATTACCGGACCAACAAAATAACCACCTTCCGGTGCTGACATTTCCAAAGCAACTCGTGCTTCGGCTTTACCCTTAGCAATATATTC # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : NA // Array 1 70149-70470 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000127.1 Mastigocoleus testarum BC008 Contig-58, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 70149 35 100.0 37 ................................... CAACAGGCTTCTTTGCATTCCAAACATACTTTAACAT 70221 35 100.0 36 ................................... ACTGGTTTCTAGTTTTATTTGTTAAAACAAACGTTT 70292 35 100.0 38 ................................... CCTCCTCCTTTTTTCGACCGCATCTCTAACTGAGGAAA 70365 35 97.1 36 .............T..................... AGTATTGTATATACTCCTTGATTTGGATTATGAAGA 70436 35 85.7 0 .............T..........T....T...TA | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 96.6 37 CTTTTAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : TTTGGATTGGGTGGTTTATTAGGTATTTTTACTATTGCAGCTATTAAAGGTATTACTGGAAGTTACCTACCATTTTTCTACGTGACCGCTGCCATTGCTTGTATCGCCATTGTTATCGCAACATTTCTTCTCAACCGTCCCCACAAAACTGCGATCGCAGATTTTTTGTTTAAATATTTGATCAGTCCCATTACTCCGGTTTTACTTTCGTTTGTGGAATTTTGGCTTGGTTCTGCTATTCCCAAGAAAAGTAACTAGAGTTAGCTATCGATTAGCTGTGCTTATTGATAGTAAATAACTGATAAGCACCTGAGGGGGTAAGGTAATGGCTAGAACCCGCATTATTACGTTGACCCCCTCAGATAAGTTGCTAGATAAGGGTTTGAGGGTGGTTAATTGTGAGTTTTTTGGGAGAAATGTACGTTATTTGGGTAAAAACTTGACCCCCTCAGATCGTGGGGTGTACAATCAGGTCGTGGTAAGGCTTCCAGGAGTCTAGC # Right flank : AGAACGAAGAAAGTCGGAGACATATCCCCGACTTTTTTAATGCATTTTTACGAACTCATATAGCAATCCTAAATCATTAATTTAAAAATGAATATTGTAGAGACGTTGCATGCAACGTCTCTACAGGATTTGTTTGTTCACAAATCAAATATGATTGCTATATAACTCATGTGAAAATTATCTTTTCTTTTACTTGCACTTCCGCGCTATGAACTTTCTATCTCAACAAATGATCACATGGAATAATATACGTTTTCCATCTGAATTAAAATCCAAAGGTAAAGATTAAAAGTGAAAAAATCACAGGAATAAATTTACAGGTTTCTAGTACAATTATGACAAATTAGAGATATTACATCACTCTCAATTACCGCCTTGGAATGAATTCCCAGGCTCATAGGCAAAGTCTGATAAATCAGACTGAGTCAAGTGTATAGTGCGTTTAAACGCAATACCCGTGAATGAAATCGATAAGCAACAAAAAATCTAACAACTAAAGA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 49206-49609 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000128.1 Mastigocoleus testarum BC008 Contig-59, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 49206 37 97.3 32 .........T........................... CATGAAACCTTAGTTTGATTTGATACAAATAT 49275 37 97.3 39 .........T........................... TTGAGAAGTCATACTCCAGCCATTGCCGGAAAAGTAAAA 49351 37 100.0 34 ..................................... TCATTTTGCAACCCGAACAACTTAGAAACAGTAT 49422 37 100.0 42 ..................................... GCAGTAGTAAAAGTTGTGAATTGCATTGTGAAAAATCTCTAT 49501 37 100.0 35 ..................................... AGAGATGGCAGCAAAAGATCATAGAATCCTAAGAT 49573 37 94.6 0 ................................C...A | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 98.2 37 GTTGAAACACCATAAAATCCCTATCAGGGATTGAAAC # Left flank : CCATCAATAAGCCCGAAGTCATTGTCCTACCCAATGCGGCTGTTGCCACATACGACAATTTATGACGTACTCTTGCTTCTTCACTTAAGCGTGTTGTAATCGCCCCAACGACTCTAATACCATCATCTGCTGCTGTTGCACGAATTAAGTGATCCGCCATGTGACAAATAACCTTACATTTCTTAACAAGTTCAATATACCTATTTTAAATTCTGATTCACAATTATTTGGGATTGGGGATTGGCGACTGGGGATTGGGGATTGGGGATTGGGGATTGGGGATTGGGTTTAAATTGTGGCAGTTATTTCTCAGGTTTTGATGATGGTACTATTCGAATAGTATTTCAGTACAATAAATCAATTTATTTGCTGTGTCTTTGCGCCAACCTGTGGGTGTTGAAAATCATTCACCAAAATTATGGGCTGAATTGATTGCTCTGTCTTGGTTTTAGGGATTTTTGTCCATTTTGAGGTTGGCGCAACTCTTGAAATCCTTTATA # Right flank : AAAGCGATCGCAAAATCAGATGAAATGTTAGATCAATATCTGGAACACTGACAACTGTTCACTGACAACTGTAGCCCGTAAGGGCGTGGCGCAAGCCATAAACTGATAACTGATAACTGTTCACTGACAACTGATAACTGATTATTCGTTATAAATTAGAAAGAATTTACGATAAAAACCAAAATGTTGGGAAAGTTTCAAAAAAGTCAATTAAGAATAGAAGTTGAAGCTTCAGCCGATAAAATTCGTGAAAGTCTCTTAAATCCCGTAACACTAAAAAAATGGCTTCCTTGGGGTAATTTAAATTCGAGCGCCAACCAACTACATTCAGGATTAGAATTTACAACTCAAATGGGAATTATTTCAATTCATCATCGAGTTGATGTCGCAGGTGATAACTGTTTGCGCTTGCTCTTGAGCCAAGGTATAGATGGTTTCCATGAATGGTACTGGGGTGAAGGTTGGGTACAATCTCGTTTGGAAGGTGTATCCATGCTACC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACACCATAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : GTTGAAACATCATAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 68672-68993 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000136.1 Mastigocoleus testarum BC008 Contig-66, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ====================================== ================== 68672 35 100.0 37 ................................... CAACAGGCTTCTTTGCATTCCAAACATACTTTAACAT 68744 35 100.0 36 ................................... ACTGGTTTCTAGTTTTATTTGTTAAAACAAACGTTT 68815 35 100.0 38 ................................... CCTCCTCCTTTTTTCGACCGCATCTCTAACTGAGGAAA 68888 35 97.1 36 .............T..................... AGTATTGTATATACTCCTTGATTTGGATTATGAAGA 68959 35 85.7 0 .............T..........T....T...TA | ========== ====== ====== ====== =================================== ====================================== ================== 5 35 96.6 37 CTTTTAACTTCTTCGGAAGTTGAACTAATGGAAAC # Left flank : TTTGGATTGGGTGGTTTATTAGGTATTTTTACTATTGCAGCTATTAAAGGTATTACTGGAAGTTACCTACCATTTTTCTACGTGACCGCTGCCATTGCTTGTATCGCCATTGTTATCGCAACATTTCTTCTCAACCGTCCCCACAAAACTGCGATCGCAGATTTTTTGTTTAAATATTTGATCAGTCCCATTACTCCGGTTTTACTTTCGTTTGTGGAATTTTGGCTTGGTTCTGCTATTCCCAAGAAAAGTAACTAGAGTTAGCTATCGATTAGCTGTGCTTATTGATAGTAAATAACTGATAAGCACCTGAGGGGGTAAGGTAATGGCTAGAACCCGCATTATTACGTTGACCCCCTCAGATAAGTTGCTAGATAAGGGTTTGAGGGTGGTTAATTGTGAGTTTTTTGGGAGAAATGTACGTTATTTGGGTAAAAACTTGACCCCCTCAGATCGTGGGGTGTACAATCAGGTCGTGGTAAGGCTTCCAGGAGTCTAGC # Right flank : AGAACGAAGAAAGTCGGAGACATATCCCCGACTTTTTTAATGCATTTTTACGAACTCATATAGCAATCCTAAATCATTAATTTAAAAATGAATATTGTAGAGACGTTGCATGCAACGTCTCTACAGGATTTGTTTGTTCACAAATCAAATATGATTGCTATATAACTCATGTGAAAATTATCTTTTCTTTTACTTGCACTTCCGCGCTATGAACTTTCTATCTCAACAAATGATCACATGGAATAATATACGTTTTCCATCTGAATTAAAATCCAAAGGTAAAGATTAAAAGTGAAAAAATCACAGGAATAAATTTACAGGTTTCTAGTACAATTATGACAAATTAGAGATATTACATCACTCTCAATTACCGCCTTGGAATGAATTCCCAGGCTCATAGGCAAAGTCTGATAAATCAGACTGAGTCAAGTGTATAGTGCGTTTAAACGCAATACCCGTGAATGAAATCGATAAGCAACAAAAAATCTAACAACTAAAGA # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTCGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 33806-34059 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000144.1 Mastigocoleus testarum BC008 Contig-73, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 33806 38 100.0 34 ...................................... TAAAATCCGCACTATCGCGTCTCGACGCGAAGGA 33878 38 100.0 33 ...................................... AACTTGCCAGTACCATTACGCTTAATTGCTTAA 33949 38 100.0 35 ...................................... TTTTTAGCGTATTTTCCCGAACGTTCGGCACGGTC 34022 38 86.8 0 ......................G.....CA......AA | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 96.7 34 GTTTCAACGCCGCTTCCAGGTTTGGGCGGGTTGAAAGT # Left flank : GCAACTACTGCTTACAAATCTCGTAAAAAATCTTAATCAAAAACATTCATCCGAACCTTGAAAATATAATAAATCATCAACAGCGCCGTTGTTCATGTGTTTAAAGCACCTCTGAGCAATGATAAATGTGGGTTAGTTTGACTGTGGGAACACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAAGCTGCTATTCTTTACGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGTGGGTTTACTACAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTTTTATTTTTGGCAGATCGAAGCGAGAGCGATTTTCCTGGGGGTTCTGCCAAAATGCTGAATCCCTTCTCTATCAGTTGTTTTGGCTTTTGTGGTGTCAATTTATTTGCTTTTTGAGATGTCTGTTGACGAGTGATTTTGGTAGACCTGCCAAAAACGCTTCCAGAAGTACTGATAAATAAGGGATTGGAGGCGCGGG # Right flank : AGACAAATAAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTCCCCTAACTACAGCACCAAGAATAAATAAGAGCTATGATTTTAATAGCTTATAATACCAATACATTCTGCTGGTTAACTAATTTGTCAACACGGACATTAATGTGTCAGCACGGACATTAATTTGTCAACGCGGTCAAATAGTTTGGCAAATGACAGACAAAATCGGGATGACTGGATTCGAACCAGCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGATACAATTATTCCAAATTAAGTGAATAGTATCACAAATATTTGCAAATAACCAAAAATTTTTTAGAGCCTAATACATAGAACATGATATGAGAGTTGCTTCAAAAAAATTGGTTATGAGCTTAGCCATTAACTCTCAGGTACGACTGTTTTATGTGCTACAAAAGCTGCATGACCTTTGGACAGATTGTACCGACCAAAACTATCTGAGATTTGAACCTG # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGCCGCTTCCAGGTTTGGGCGGGTTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.50,-9.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 27350-26946 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000160.1 Mastigocoleus testarum BC008 Contig-88, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 27349 37 97.3 32 .........T........................... CATGAAACCTTAGTTTGATTTGATACAAATAT 27280 37 97.3 39 .........T........................... TTGAGAAGTCATACTCCAGCCATTGCCGGAAAAGTAAAA 27204 37 100.0 34 ..................................... TCATTTTGCAACCCGAACAACTTAGAAACAGTAT 27133 37 100.0 42 ..................................... GCAGTAGTAAAAGTTGTGAATTGCATTGTGAAAAATCTCTAT 27054 37 100.0 35 ..................................... AGAGATGGCAGCAAAAGATCATAGAATCCTAAGAT 26982 37 94.6 0 ................................C...A | ========== ====== ====== ====== ===================================== ========================================== ================== 6 37 98.2 37 GTTGAAACACCATAAAATCCCTATCAGGGATTGAAAC # Left flank : CCATCAATAAGCCCGAAGTCATTGTCCTACCCAATGCGGCTGTTGCCACATACGACAATTTATGACGTACTCTTGCTTCTTCACTTAAGCGTGTTGTAATCGCCCCAACGACTCTAATACCATCATCTGCTGCTGTTGCACGAATTAAGTGATCCGCCATGTGACAAATAACCTTACATTTCTTAACAAGTTCAATATACCTATTTTAAATTCTGATTCACAATTATTTGGGATTGGGGATTGGCGACTGGGGATTGGGGATTGGGGATTGGGGATTGGGGATTGGGTTTAAATTGTGGCAGTTATTTCTCAGGTTTTGATGATGGTACTATTCGAATAGTATTTCAGTACAATAAATCAATTTATTTGCTGTGTCTTTGCGCCAACCTGTGGGTGTTGAAAATCATTCACCAAAATTATGGGCTGAATTGATTGCTCTGTCTTGGTTTTAGGGATTTTTGTCCATTTTGAGGTTGGCGCAACTCTTGAAATCCTTTATA # Right flank : AAGCGATCGCAAAATCAGATGAAATGTTAGATCAATATCTGGAACACTGACAACTGTTCACTGACAACTGTAGCCCGTAAGGGCGTGGCGCAAGCCATAAACTGATAACTGATAACTGTTCACTGACAACTGATAACTGATTATTCGTTATAAATTAGAAAGAATTTACGATAAAAACCAAAATGTTGGGAAAGTTTCAAAAAAGTCAATTAAGAATAGAAGTTGAAGCTTCAGCCGATAAAATTCGTGAAAGTCTCTTAAATCCCGTAACACTAAAAAAATGGCTTCCTTGGGGTAATTTAAATTCGAGCGCCAACCAACTACATTCAGGATTAGAATTTACAACTCAAATGGGAATTATTTCAATTCATCATCGAGTTGATGTCGCAGGTGATAACTGTTTGCGCTTGCTCTTGAGCCAAGGTATAGATGGTTTCCATGAATGGTACTGGGGTGAAGGTTGGGTACAATCTCGTTTGGAAGGTGTATCCATGCTACCC # Questionable array : NO Score: 9.17 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACACCATAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : GTTGAAACATCATAAAATCCCTATCAGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 23534-23938 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000017.1 Mastigocoleus testarum BC008 Contig-113, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ====================================== ================== 23534 38 100.0 34 ...................................... AGAATATTTCTTATTTAATTGCATGCGATCGCGA 23606 38 100.0 37 ...................................... GCTTCCCACTTGGTCTATGTTGCCACTACCAACCCAA 23681 38 100.0 33 ...................................... CCTTCGTTGACCCATATTGCAAAATCGTTAGCC 23752 38 100.0 38 ...................................... CTTTCATTTCACAATCAAATATTTTGGCTAATCTCTTA 23828 38 100.0 35 ...................................... AGGAATAATTATCGAGAAGAGAAAGACAGCGTAGT 23901 38 94.7 0 T....................................A | ========== ====== ====== ====== ====================================== ====================================== ================== 6 38 99.1 36 AATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Left flank : TCAGGACGTTGAAAAGTTATCTGCTGTTTTAGAAGCGATAGAAACTGTAGATTCGCTAGAGGAACTGAGGAAGGTTTATCAGTCAGCAAGCGAGTAGTTCCAGTTACAAATTTTTATGGACTTCCAAAATTAGGATTTCCAAAATTAGAATTTCTAAAATTAAATATTCAATTTGCTAGAGTAGGGTGTGTTAGGCGTTAGCCGTAACGCACCGAAAAAAATATAATCTTGTTATCTGAAATTTACGATTTTTGCGCCAACCTGTGGGTGTTGAAAATGAGTTGCTAAATTTAGTGGCTGAAACGCTTGCTCTGTATGGCTTTGAGCTATTTTTGCTTGGTTTGAGGTTGGCGCAACGCTCGAAAGCTTTTATTTGTAAAGGTTGTAGCGATTTTTCTGGAGGTCGTACTTGACAAGCAATCGGCTGAAACAGTATTTTATATTTGATTGGCGCAAATGTACCTTGAAAACTGCATATAGCAAGGCTTCTATTTTGAGCG # Right flank : AGTCCCCCAAAATTGGGGGATTGAGGGGGCTAATAACTAATCTGCTCCCTCAATAGGCGCAAAACCTTGACGCTGAATATTCTCCGTAATCGTACGCGGTTCGAGGAATTGTAACAAATAATCTGGACCGCCAGCTTTAAAACCGACACCAGAAAGTTTAAAACCACCGAAGGGTTGTCGCGATACTATCGCCCCAGTAGTATTACGGTTAATATACAAATTACCTACTTCAAAATCTTCCTCCGCTTGCTCAATATGGGAAGGAGTACGAGAATAAAGCCCGCCAGTTAAAGCATAATTAGTATTATTTGCAACTTCTAATCCTTGCTGAAAATCTTTAACTTTAATTACTGCTACCACCGGACCAAAAATTTCTTCCTGAGCTATGACCGCGTCGGGTGTAACATCTGCAAAGATTACCGGACCAACAAAATAACCACCTTCCGGTGCTGACATTTCCAAAGCAACTCGTGCTTCGGCTTTACCCTTAGCAATATATT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATTGCAATTAACATTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 32092-31838 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000035.1 Mastigocoleus testarum BC008 Contig-13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== =================================== ================== 32091 38 100.0 34 ...................................... TAAAATCCGCACTATCGCGTCTCGACGCGAAGGA 32019 38 100.0 33 ...................................... AACTTGCCAGTACCATTACGCTTAATTGCTTAA 31948 38 100.0 35 ...................................... TTTTTAGCGTATTTTCCCGAACGTTCGGCACGGTC 31875 38 86.8 0 ......................G.....CA......AA | ========== ====== ====== ====== ====================================== =================================== ================== 4 38 96.7 34 GTTTCAACGCCGCTTCCAGGTTTGGGCGGGTTGAAAGT # Left flank : GCAACTACTGCTTACAAATCTCGTAAAAAATCTTAATCAAAAACATTCATCCGAACCTTGAAAATATAATAAATCATCAACAGCGCCGTTGTTCATGTGTTTAAAGCACCTCTGAGCAATGATAAATGTGGGTTAGTTTGACTGTGGGAACACAGTCTTGCTTTCTGACCCTGGTAGCTGCCCACCTTGAAGCTGCTATTCTTTACGGATAGGAATTAGGTGCGCCCCCAGTAATAGAGGTGTGGGTTTACTACAGTGGTGGCTACTGAATCACCTCCGAGCAAGGAGGAACCCACCTTAATTTTTATTTTTGGCAGATCGAAGCGAGAGCGATTTTCCTGGGGGTTCTGCCAAAATGCTGAATCCCTTCTCTATCAGTTGTTTTGGCTTTTGTGGTGTCAATTTATTTGCTTTTTGAGATGTCTGTTGACGAGTGATTTTGGTAGACCTGCCAAAAACGCTTCCAGAAGTACTGATAAATAAGGGATTGGAGGCGCGGG # Right flank : GACAAATAAGGTGGGTTGAAAGGCGCACTTCGTTCGGGATTTCCCCTAACTACAGCACCAAGAATAAATAAGAGCTATGATTTTAATAGCTTATAATACCAATACATTCTGCTGGTTAACTAATTTGTCAACACGGACATTAATGTGTCAGCACGGACATTAATTTGTCAACGCGGTCAAATAGTTTGGCAAATGACAGACAAAATCGGGATGACTGGATTCGAACCAGCGACCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCTACATCCCGATACAATTATTCCAAATTAAGTGAATAGTATCACAAATATTTGCAAATAACCAAAAATTTTTTAGAGCCTAATACATAGAACATGATATGAGAGTTGCTTCAAAAAAATTGGTTATGAGCTTAGCCATTAACTCTCAGGTACGACTGTTTTATGTGCTACAAAAGCTGCATGACCTTTGGACAGATTGTACCGACCAAAACTATCTGAGATTTGAACCTGA # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACGCCGCTTCCAGGTTTGGGCGGGTTGAAAGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.30,-9.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 21345-21824 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000036.1 Mastigocoleus testarum BC008 Contig-130, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================================= ===================================== ================== 21345 39 100.0 33 ....................................... CGCACCATTTGACGAGCGCGTCTTGCAAGTGCA 21417 39 100.0 33 ....................................... AAACATAAGAGAGCTTTCGAGAAAAATAAAATA 21489 39 100.0 37 ....................................... GCCCTTTCCGTCCCCAGTTGCAGCCATTACTCGTAAA 21565 39 84.6 35 ..C............A....GAT..............T. GTAGTTTTTGTTGTCAACAGTATGGGCTGTTTCAG 21639 39 92.3 35 ......T........A........C.............. ATATTTCCTTATTTTTGTTCAAGAAGTTCTCTAAG 21713 39 92.3 34 ....................GA...............T. ATCTGAATACAGACAATTTAAAATCCAGTGTGTC 21786 39 87.2 0 ..C.....G...........G.T..............G. | ========== ====== ====== ====== ======================================= ===================================== ================== 7 39 93.8 35 GTTTCCCCACTCGTTGGGGAAGCGAACTAATGGAAACAT # Left flank : TTGGTATTAAGTATAGGACTTACGCAAAATTAACGTAATTCCGTCATTACGTTAGCGCAGCGTGTTCGTTAGAACAAGCGATAGCGACGTATATGTCCTGCGGACACGCTGCGCTAACGCAAGAACTCTGAGATTGCTATCTCCTAAACGGAGACGCTCTGCTAACCCTACACTGCGTTTCGGTCGCAATGACAAATATTCGTTGCGTAAGTCCAGAAGTAAAAGCTTGACCTAAGTCAAATAACAAATATAAAATAATTTTCTAAATAATTTTTTCAGAAATCAAAAAATTTGAATTTTGTGGAAGTTGAATTTGACGGGGGAAAGCGAGGGCGAAAACCCTGGGGTCCCGTCAAAACGTCAGAACCTTGATAAATCAATACTTTTAGAGTTTTGTGCGATGGGGTTGATTGTTTTCTCGATCGCCGTAATGGGGTTTTTAGATTCCCCCGTCAAAATTGGTTGTGGAAATGGCTCTGTAAATGGGTTTTGATGACTAG # Right flank : TCATTGAACTGGCGGAAGTTGAAGAAATTCATCAGTCTCCCCACTCGCTGGGGAGATAAAAAATCACAACTAACTAATATTATTTCTTACTCTTCAACTGCTCCAAGGATTCCCGTAGCGACCTTTTTAACCTTCTCCACTAATTCAGATGGCTGTATAACTTTAACACTTCCACCAAAACCTAAAATCCATCTCAACAAATCAAAGTCATTTAAAGACCACTTTGGTAAAACCGTCTGAAATCTATTCGGGAATTGTTTATCTTCCGTAGGTGCTTCCAAACAAAAAATTGATTTTGGTAAATTTACTTTACCCACAGATCGAGGTCGAGACATTTTGATTTGTGCAAATCTTTTCGTACCTTCAGTGATAAAGTGAAATATCTTATCGTCGAACCACAGTTCTACCGTTACACATACTTCCATTCGCTTATTTTTATTTCGACTCAGGAATCGATATTGGTCTTCAACACTATTCCCTAGATATATTCCCGCACTTGC # Questionable array : NO Score: 2.80 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCCACTCGTTGGGGAAGCGAACTAATGGAAACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.28%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-4.90,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 5197-4660 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000055.1 Mastigocoleus testarum BC008 Contig-15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 5196 37 100.0 33 ..................................... TTTCGCCGATCTTTGACGAATTCTTGGATTTTT 5126 37 100.0 35 ..................................... TGGGATGACCGCAGTGAAGCTTGAGGAGTGGTTGA 5054 37 100.0 35 ..................................... ATATCTCCTGCTATATGAAAAGTAACTTTAGTATT 4982 37 100.0 35 ..................................... GTTGCAACTTGGATTTAATTGCTGCTAACATTTCC 4910 37 100.0 34 ..................................... AAAAATGATAATGGCGACATTAATGTTAATACCC 4839 37 100.0 33 ..................................... AAAATAAATGGCAAGCGAATAAATCCGGAACAC 4769 37 97.3 35 ..................................G.. GCTTTAGGGCTTGAAGATAGTAATTCTTTTGCTAA 4697 36 94.6 0 ...............................A-.... | T,C [4661,4664] ========== ====== ====== ====== ===================================== =================================== ================== 8 37 99.0 34 GTTGAAACTAAACCTAATCCCTATCAGGGATTGAAAC # Left flank : TTATGAACTGTCGATTTTTCTGTTTCTATTATTAAGTAATAGAGAATAACCTACCGGGAATCGAGAAGAATAGTAGAAAAAATTAATTTTTGTTCCCGTAGGGTGCTGTTAGACGCGCAAAGAAATAAAGCATTTACAAGTAAGCTTCAATCGCGTCGTAACGCACCGCCAAGCTTGGGCAAATTGGCTAACATAAGATAAGGATTATTGCGAATCAAAGATCAGTAATTTTCTCCCGTTGAAGCAAAAATTTGCGCCAACCTGGGGGTGTTAAAAAACATAGGTCAATTTTTTCGGCTGAATTCCTTATGCAGCAAGAGTTTCAAGGTTTTTTAGAGTGTTTGAGGTTGGCGCAATCGCTGAAATACCTTCTGTGCGATGGTTTCGGAGTTTTTATTTTTGCTACTGTTGACAAGCCAGGGGCTGAAACGATACTTTTGAATGAGGTTGGCGCAAATGTACCTCGAAAATCAAATATAGTAAGGGTTCTGGAGCGAGCT # Right flank : TGATTAAGTCCAATATCCCACCTTGAAATAAATGATGTTGTTGGTTAATTTGCGTAGGGTTTAACCCCTCACTCTAAAAGTCCTTATTTTGCGTCGTTTATATTCCATACAATAAATACGGGCTAAAGTTTATGAATCTATTTCAAAGCACTTAAATCGGGGAAATTAATATGGTTTGGGAATGATGGGTCAAACCCCCTTTATATTCGCCAACAGCATCATAAATTTCAAGGCTTATAATCTAAGTACGTTGAAACGCACTACGAAGCTTACTCAGTCTGATTTATCAGACTTTGTCTATGAGCCTGGGAATTCATTCCTAGGCGGATATTTAGATTATTTGAAAATGCAGTAAGTTATCTGTTGAAACTGATAACTTGCAGCAATCTGATTATGTCCAACATCCCACCTTGAAATAAATTTCAACACGCTTCGTGTCGCCGCTCTAGCGAACAAGGCTTATAATCCAAGTACCTTAAAACGCACTACAAACCTTACCC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTAAACCTAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 71072-72571 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000084.1 Mastigocoleus testarum BC008 Contig-19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 71072 37 100.0 35 ..................................... AATTGTCATACTTTACTAGGATTCGCTAGCGCTAC 71144 37 97.3 35 A.................................... AGTTCCCCTACTCTGGTTAAATCTGGTTGAATATT 71216 37 100.0 35 ..................................... AACCTACCCCTGTTAACCCAGCGACAACTAAACCT 71288 37 100.0 35 ..................................... GTCCCAGTTGAGGAATGGCTTTAACCAAAGATTGA 71360 37 100.0 35 ..................................... TTCAGATGAAAGTCTGGACCCAAGGGCGTACAAAG 71432 37 100.0 43 ..................................... ATAGTAGGATTTTATCTGGTTTATTGCTATTTAAAGCTTCCTG 71512 37 100.0 35 ..................................... AGAAGAAGCGGCTATGACTGCGGCTAGTCGCCAAG 71584 37 100.0 33 ..................................... TTTAAAGCAGCGATCGCTACCGAGCACAAAGCT 71654 37 100.0 37 ..................................... AAGAAGGAGTTGATCGCATAGAAAAACAAAGTACAGA 71728 37 100.0 36 ..................................... TACAAATTTAGTTGATTTATGCACAGCTGCTGGACA 71801 37 100.0 36 ..................................... AATTAACAACTCGATTTGAACTGGTATTCAGAACTT 71874 37 100.0 38 ..................................... AACTAAGCCTTGTCCCAGCCCTCATCAAAGTGGTGGGA 71949 37 91.9 36 .......T...AA........................ GATTGGTTGAATCAGAATAGAGAAGATGGCTTGATT 72022 37 91.9 38 .......T...AA........................ AATCAATAAATCGTTTTCTGTCTATTGAATCCATAATT 72097 37 91.9 37 .......T...AA........................ TCATCTTCAATTTCATCTAATAATAAAAAGTCGTCTT 72171 37 91.9 36 .......T...AA........................ TCTCTAGTTCGGATTGCTTAAATAAATTTTGCATAC 72244 37 91.9 36 .......T...AA........................ TTTTATCTGCGATCGCACCAAATTGAACAACAACCT 72317 37 91.9 36 .......T...AA........................ CGCTACGTTGTACCCGTTTAACCACTGTAATAGTTT 72390 37 91.9 36 .......T...AA........................ TCTTGATTTGATACCCACAACCACTCATTGTCTAAT 72463 37 91.9 35 .......T...AA........................ CTAGCGAATCCACTTTGACGCGCACTTTTTCTAAG 72535 37 86.5 0 .......T...AA.....................T.T | ========== ====== ====== ====== ===================================== =========================================== ================== 21 37 96.1 36 CTTTCAAATTACTTAATCCCGCTTGCGGGATTGAAAC # Left flank : GAAAGCAAGTTGACAACTCCAGCAGGGATGGGGTCCAACTGGTTTGCGATGCACGCGACCTACTCTTACTGAAAATAGTTTTCCTGCTTCTTCACATAATGCTGTTGCACGATCGCAGGTGGATTCATCAAAGTAAACGTGGGCGTGGTAACCTGTAATTAAACTAATATTTTGAAACTCCATAAAAATTGAAAATTTAATTAATGGTTTATGGTTTCAGTTTAAATCTGAATTAGTTATGCTGTTTGGGTTAAGAGTTTTACTTACAAAAAGTTTTTTGATTGACTTTATTTGGAGCGCTGCTACAATATTTTTGACGGGGGAAAGCGAGGTCGAAAACCGCGATGTCCCGTCAAATCGTCAGAACCTTGACAATTCAATACTTTCAGGGTTTAGTTACTTGATGTTTCATATTTCTGCAGTCGCTGAAATTAGGTTTTTAAATTTCCCCGTCAAAATCGGTCGTGGAAATGCCTTTATTATTGGGTTTCAGATGGCAG # Right flank : TCATGTCTGGTAAAACACTTGCGATAAGGTTCGTAGTAGCGCTTGAGCGCCAATATCTTTACTATGGCGCTAAAGCGCTACTACAAACATATTTTTTCATAAGTAATTAGGCGGACATGATATGAAACATATATATAAATTACTCAAATACAACAAATCGGCAGACGGTGCGTTAGACCTATTTGAGTTATCTTTAGAAATCAAATATAGTAATGGGTCTAACACACCCTACAGTAATTTTGTTTGTTAAAAGTCTAGAGTTATCAGTTATCAGTTATCAGTTTATGGCTAACACCACGCCCTTACGGGCTACAGTTATCAGTTAGTTCTTACTCTTTACTTATTACTCATTACTTATTACTTATTACTTATTACTTATTACTTATTACTCATTACTTCTTCTCACCCCATACCTGCTTGCTTAAATAAACCCATTAATTTGCGTTTGCGAACATGCTGTTGAATTAAACTTTCTTTGTAGTTAGACCAATCTGCTTTTC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:0, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAAATTACTTAATCCCGCTTGCGGGATTGAAAC # Alternate repeat : CTTTCAATTTAAATAATCCCGCTTGCGGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 107029-108482 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000084.1 Mastigocoleus testarum BC008 Contig-19, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 107029 37 100.0 33 ..................................... CAAATCATCCCCCAGGAGATAATTACCTCCTAT 107099 37 100.0 33 ..................................... GCGTTTATTTCAAAGACGGAACGAGTGACACTT 107169 37 100.0 35 ..................................... CCGCTAATCTTCTCGAACCTGCGCCTGCTCTTTTA 107241 37 100.0 35 ..................................... TTTTGTATTTAAATAACATGGCTGCTAATTCACAA 107313 37 100.0 35 ..................................... ACCACCAGATGCGCCAACATTAGTAGAGCTATTTG 107385 37 100.0 35 ..................................... CCATTGGGGCAGGTTGCCATTTCATTAATTTTTGC 107457 37 100.0 35 ..................................... AGGCTAGAATTTGGCTCCCCTGCCCAACCTTCTAA 107529 37 100.0 31 ..................................... GTTGGTGGAACTGCTTGCTCACACCAGTTTC 107597 37 100.0 34 ..................................... AAGCTTAAAAATTCTTAGTGAGCTTTCAAGCATT 107668 37 100.0 33 ..................................... GATTCCTGCTACTTCTTTGGAACCGCCCCGATT 107738 37 100.0 33 ..................................... TTCTCAAAAACATGCCTGAGTATCGAACGACAC 107808 37 100.0 33 ..................................... TTCTAACTTTAAATCCCCTGCTTTTGCGATCGC 107878 37 100.0 34 ..................................... TGATAATAGCTAATCTTTCCCGACTTAGCGTATA 107949 37 100.0 33 ..................................... TTGATTCCTTAACTCTCTGTCAAAGATTCGTTC 108019 37 100.0 31 ..................................... CCAAAAGGTTTGTTTCAAGAACCGCCTAAAC 108087 37 100.0 34 ..................................... GTACGCTTTTCTTCAACCTGATTTTGTGGAAGAA 108158 37 100.0 33 ..................................... TTACTTGCTTTAATCTATGACGGAGCGATCGTT 108228 37 100.0 38 ..................................... ATAACATTGCAATGTTACTCCAAACGTGTAATCCATGT 108303 37 100.0 36 ..................................... GTCTGGATTAAAATTTTTTGGATCAACCACAGTTCC 108376 37 100.0 33 ..................................... ACTAGATCTAATTCAATACATCCATTGGTATAT 108446 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 100.0 34 GTTGAAACTCACTAAAATCCCTATCAGGGATTGAAAC # Left flank : AAACGTCGCACTAAAATTCATAAAATTCTTAAGTCCTATGGGCAGTGGATGCAGTATTCTGTTTTTGAGTGCGATTTAACCGATACCCAATATGCTAGACTGCGATCGCGTCTTTCGAAGGTAATTGAACCTTCTGTTGATAGCATTCGTTTTTATTCGCTGTGTGGTTGTTGTCAACCAAAAATTGAGCGTATTGGTGGTGAAGTCCCACGAGATAATACAGTATTTTTTGCTTGATGTTTGCTAGTCTTTTGCGCCAACCTGTGGGTCTTAGAAATGAGTTGTTAAATTTAGCGGCTGAAATCCTTACTGCACATAGCTTTGAGCGATTTTCACTAGATAAGAGGTTGGCGCAACTCTTGAAATCTTCTCTATGTAAGGGTTTGAGCAATTTTTTCGAGTTGCACTCTTGACACTCCTGCGGCTGAAACAGTATTTTAGATGAGGTTGGCGCAAATGTACCTTGAAAACTAAATATAGCAAGGGTTCCATTACGAGCA # Right flank : CTCAGCAAGAACAAAGCGATCGCTCCTTTAGCAAACACTCTCAGTTTTCTCAGATAACTCTTAGCAAAGACTCATTTACCAATCACCAACCCCTCAGACTCATCACCGATATTAGTAATCAAGGAAAAGAAAACGACATAAAACAAAGTTTACAGGAGCAATCACCATGAATTTCAACAGAGTAGCAGGTTTAGGAATCGCATCAATTGTATTATTCGGTAGTGTTGTTTCAGTAGTAGTTAGTCCCGAAGTAGCCGAAGCGCGTCCCGCACACCAAGATACAATAGTTGCGAACAAATCTAAATCGCTGATTGCATCCGGTAACTTTGTTAAATCAGAAAAAGCTACCACCGGTAAAGCCAAAATCGTCAATATGAATGGTAAACGCTATCTCAAATTTGATGAAGCATTTAGTACCGGTAATGGTCCCGACGTGAAAGTTATCTTACATAAAAGCAGCACTGTACCAGGAAATATTCAAGAAGGAAACTACATTACCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAACTCACTAAAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.40,-7.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [58.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 1 73237-74881 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000099.1 Mastigocoleus testarum BC008 Contig-32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 73237 37 100.0 36 ..................................... AACAGGGTTAGTATCATCTACGCCAGAGTTAGTTCT 73310 37 100.0 34 ..................................... ATTGTGTACCGGCTCGGAGGTCGCCACCTTAGCG 73381 37 100.0 36 ..................................... TCCTTGCTAGCTGAACACAAAGTTTATCTAAATTAG 73454 37 100.0 36 ..................................... GACAGTAGCAAAATTGAGTACTTTAAAAATTACTAT 73527 37 100.0 36 ..................................... TTAATTATCCACATTATTTTTCTAGAATTTTGTAAT 73600 37 100.0 37 ..................................... AATTTGAGTAAGGCGCTTGCTGATTTGAGTGATTTTA 73674 37 100.0 36 ..................................... AAATTCTTCTTTTTCCGGGGTGGTTGTCTCGTTATC 73747 37 100.0 42 ..................................... ATTTGAATCACAAAATACAATAAAATATTGCTAATTTCCTAG 73826 37 100.0 36 ..................................... CTAAATTGATCTGCACTACATTGAATATCAAAAGAG 73899 37 100.0 37 ..................................... AATTCAAACCCTGCAATTACACCACTAATAGCGTTAG 73973 37 100.0 37 ..................................... GTGGAAAATATGCGGATAATTGCTTGAATATTTCTTT 74047 37 100.0 36 ..................................... CGTTTGGCAAGACGCCCCCACCAATGATGAAACTAT 74120 37 100.0 38 ..................................... ACGTTTTGGTGGATTTCACCTCTCGGAATAAATCTCTT 74195 37 100.0 36 ..................................... AGCAAACTGTGAATAGTTATCCCCCAATTCCGCAAC 74268 37 100.0 34 ..................................... CATCAGGGAGTCTATTCTTTCGTCCAGATACAAG 74339 37 100.0 35 ..................................... ACCAAATCGCTTTTTTCCGTCTGGCAACAGTTTCC 74411 37 100.0 35 ..................................... ATTATTTCAGTTGGAATTGCTTTTCCAAGGCAAAA 74483 37 100.0 36 ..................................... GTCGTTAATATTAAGCACCCAAATACCATCAGCAAG 74556 37 100.0 33 ..................................... TCTTCTGGCGAAATATCGGACAACTTTTCCTTG 74626 37 100.0 36 ..................................... AATTACAACGGGAATTCATACGTTTGGCGCAATAAC 74699 37 100.0 36 ..................................... ATCACGAATCACACCTTGGATCAACCGCCTTGCAGG 74772 37 89.2 36 .......CA..........T...C............. TAGAACACCGTCATAGTGAAATTGGGATTAAAGACG 74845 37 89.2 0 .......CA..........T...C............. | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 99.1 36 CTTGAAATCTTACGAATCCCGCTTGCGGGATTGAAAC # Left flank : ATATCAATTCAATAAAGCCCCTTGCAGCTAAACTTCTTCCCACTCCATCCGCACCCGCAAACAAATAAGCCGGGGCGATTCGGTTTTGCATTACGGCTTGTGTGAGTAATTCAATTGCTTGTGGTTGTCCGATCAGGGAGCTAAATGGGGTGGACGATGTCATCTCATTTTTATTGATGATAAAGGCAGATAATGGGAGACTTTATATTAAAGTTGCTGCGCGATCGCATTGTACTTTATTATTTAAATGCTCGACAGAAGGAATTACTTTCCAGTATGATATTGACATTAGCTTGATGTTTGGCAAACCGAAGCGGGGGTCAAAACCTGGGGGGTTCTGCCAAAATCGCCGGAACCTTGACAATTAAATAGTTACAGCGTTTTGGTTATTGGATTAAATGATAATTTGTTTCAATAAGAGTGGCTGAAATGATGCTATTTTTGAGGTCTGCCAAAATTGATTGTGGAATCCTTGCTCTGTAAGGGTTTTGGGCGGCGGA # Right flank : CGTTAACCTGCGGTTGGGATTACTTCCACACACACGTAAATAGTTTGGGAGCTTGGTAGCCCTGCTCTTTTAAGGCAGGGTGGAAAAGCGACACGGGCAGTTTTAACTGCCATTCTCTACGATTAATTGGTCAACATACAACCTCAATTTTTCTTGCCAGTTTGGGACTAGCTTGAGTTTTTCTTTCTGCCCTTCATAACCTCTAAAGCCGATTATCTGTTTGTCCAGAGGTCGGCTTAATATTTTTTTTGCACCAAGTTTGTTATTTTTCTGAAAAGGCATTGACTTTTATTGTAGTAGTTCGTTAACATACATATAACATACATTTGGAGGTCGTTAGCGCAGCGTCGCCGCAGGTGATACAAATGGCTAAGGCTACAACACCATCATTCATAACGGAAATCCCCTTAAAAGTAGACAGCAAACTAGGAAGTAATCTTGATGCAAGGTTTCAGGCTGGCAGACAACTTTTAAATGCTTGCTTGAATGAAGCGTTAATT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:0, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAATCTTACGAATCCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.10,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0 Confidence: HIGH] # Array family : NA // Array 2 89063-89699 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000099.1 Mastigocoleus testarum BC008 Contig-32, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================================================== ================== 89063 37 91.9 228 ........A..........T...C............. AATTGGATCCGTTGCTGTATTGAAAATTAGTATAAGACCGTCGTTTTCAGGGATATTTTCTAAGCGATCGCCCCAAGTCTCCATCGCGTTCTGTGCCCAATCGCCACCAACGTAGAATCCAAGCGGTTTGTATTCGGTCGTTAAAAATTTGGTAAGTCCAAAAACAACCTCGACTTTGTAGGACTCTTCAGTAAAGATTAAAGCTTGCTCAGCCTCACAGACTGCAGA 89328 37 100.0 36 ..................................... TTTTTAGTTCGCTTAACCCTTCCCAACATTTGGTTT 89401 37 100.0 36 ..................................... AGAGATAAAGATTTAGATTGCTCCACCGTGTTTGCA 89474 37 100.0 36 ..................................... AAGTCATCGAAAATGATGCTGAAAATTGGTTAAAGG 89547 37 100.0 35 ..................................... ACCTCACCACTGTTAATACCTTTAATTTGGAAATC 89619 37 94.6 7 ............A............T........... TGTTAAA Deletion [89663] 89663 37 67.6 0 .......AAAG..A......AG.CA......AA...T | ========== ====== ====== ====== ===================================== ==================================================================================================================================================================================================================================== ================== 7 37 93.4 63 CTTGAAACCTTACGAATCCCGCTTGCGGGATTGAAAC # Left flank : GATTTTTACCCGATACTTTACTTTTACAGGAAGCTAACTTAAGTAAAAATATTTACAAACTAAAAGAGTTAGATTTGAATGCATTTGGTACTGATGAAATTGAGTTCTTACAGCTTTATTCGTTGGTTGTTAGAGCTTTAAGGTTATGCGACCAAAGAGCGGTACAATTAATTTAATATTAATACCATCTGTTTAATCTCCTGCATTATACTTACGATAGTTTTGATGTAAAAGTATATTTTTATTGCAGTAGTCTGGACTTTTCTTAGCTAAAGCATTATTGTGTTATTAGATTGATGTTTGGCAAATCGAAGCGGGGGTCAAAACCTGGGGGGTTCTGCCAAAATCGCCGGAACCTTGACAATTAAATAGTTACAGCGTTTTGGTTATTGGATTAAGTGATAATTTGTTTCAATAAGAGTGGCTGAAATGATGCTATTTTTGAGGTCTGCCAAAATTGATTCTGGAATCCTTGCTCTGTAAGGGTTCTGGGCGGCGGA # Right flank : TCTAATAAATCTCGCTCGGTGAAAATAATTCAAGAGATTTAATCGTGGTCAACAGCCTAAAAGAACTAATTTACGAACCTGAATTAAATAATGCTTCCGACCCAGAAGAAATATTTGTTAGTAGTGACATAAACTGGGAAAATTATGAAGCGTTACTAGTGAAATTAGAAGATAATTCCCACTACCGCGTCACTTATTTAGATGGAGTATTGCAAATAGTGTCGCCGTCGAAAAGACACGAAAAAATAAAAACTCGTTTAGCTTTTCTTATAGAATTTTATCTTTTTAAAAAACAAATCAAACATACTCCAATGGGGAGTACCACCTTAAAAAATCGATTACAAAAAGCTGGTGCAGAACCAGACGAATGTTACTGTATTGAAGAAGAAAAAGATATTCCAGATTTAGCGATAGAAGTAGTTTTTACTAGTGGGAACATTAAAAAACTAGAAACCTATCGCCGACTTGGAGTGAGAGAAGTTTGGTTTTGGGAAAATAAC # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:3, 4:0.67, 5:0, 6:0.25, 7:-3, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGAAACCTTACGAATCCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-9.10,-8.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : NA // Array 1 40310-38375 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000094.1 Mastigocoleus testarum BC008 Contig-28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 40309 37 100.0 36 ..................................... CAGAAATCAGGGATAAGAATATCTCCGATCATATGA 40236 37 100.0 35 ..................................... TTGCCTGGAGCTGAGTTGTTTGGAAATTGATAACA 40164 37 100.0 36 ..................................... CATTGCTAGCTTCCATATAACCACGACCTCTATACA 40091 37 100.0 40 ..................................... TTGCCTCTGCTTCATCATGGGATAATTTTTGATTGTCCAA 40014 37 100.0 36 ..................................... AATCTTTTGAATCTTGCATGAGTTGGAATACTTTTT 39941 37 100.0 35 ..................................... GTCTTGGGAGCTTTCTTTTTCTTGGGCTTAGTATT 39869 37 100.0 35 ..................................... CGCTTCAAATTATTTGTGAATTTAGGTTTTAGATA 39797 37 100.0 37 ..................................... GGGGGAATACCATCTGTTTCTAATGCAGCACGGATAA 39723 37 100.0 37 ..................................... ATGCTGAACGACGGGTTACTTAAGAAATTACTTACAC 39649 37 100.0 36 ..................................... TTTAATAGTAAGAAAGGTTTGCCCTTTTTGCGAAGG 39576 37 100.0 35 ..................................... GTTAACTAGAAAGCTAGGACGGAATGCCCATACGG 39504 37 100.0 37 ..................................... AAATGTATAAAACCCAGCATCATAAAAACTCTTGGCT 39430 37 100.0 36 ..................................... CTTCTCTTACACACTTTAGGAAAGCATAATTTCTAG 39357 37 100.0 37 ..................................... GGAAGAATAACGAATTTGAAATTTTTTTTGATCAAGT 39283 37 100.0 36 ..................................... ACGGCAGCACTAGGTTTTTCTCTAGTTCCATCCTTT 39210 37 100.0 35 ..................................... GCAACATCAAAATTGCGTTGTTCTTTTAATCCCCG 39138 37 100.0 36 ..................................... TCTTAATCAAGGTTTTTGTGTTGTTGATTGACGTTA 39065 37 100.0 35 ..................................... ATGATGCAACACCACCTTAGCAGCGCGTTTTAATT 38993 37 100.0 36 ..................................... GGTAAACGGGACTTATTTAACTTGTTCAGCGTAATT 38920 37 100.0 38 ..................................... ACCAGCTGAACTTCGGCGGCAGATGATTCAATATTTCC 38845 37 100.0 35 ..................................... AAACTGTCTGGTGTTCTTAATTCTTGGTAATCATC 38773 37 100.0 35 ..................................... GTGCAGCAAACGCTAACAAAGTTAAGGTAGCTGCT 38701 37 100.0 34 ..................................... CTTAGACTTAATTTTGAATTAACTGGTCAGTCTA 38630 37 100.0 38 ..................................... CAAAATAGAATTAAACCTAATACCCCTATTTGGTCGGA 38555 35 94.6 36 .............................--...... AAAGAATAATAAAAATTAAGAGATATTTCTTTCCTT 38484 37 70.3 35 ....A.GA...AAA.....TT...TAT.......... AATAATTATTTGGTTATAAAACAGTTTTAAATCAT C [38454] 38411 36 78.4 0 .......T.C.-.G...T.T....A...........A | T [38390] ========== ====== ====== ====== ===================================== ======================================== ================== 27 37 97.9 36 CTTTCAACTTACTTAATCCCGCTTGCGGGATTGAAAC # Left flank : TTTGAAGTTTCACCATGTTTGCTCAGAATGTTTGAAATTTCAATTCAAATTTTTTGTGTCACGAAGTTTTAGATTTCATAGTTATTTCAATTTCATGGTTTGTAAAAATTTCGATTGAGTCCAAGATAATGCTGATTGCAAAAAAGTCCTAGTCAAAAAATGATAACAACTGGTTTATTGTTGGTATAAATTCTGTTACATAGTCTCGAACTGCCCTTGTAGCAAAGCTTTGATAAGATTTAAAATAAAAAAATGAATTTTTGTAATCGACAATTTCAAGTAAGGGCTGTATCTTATACAGGAAGCGTAAATTTGACGGGGGAAAGCGAGGGCGAAAACCCTGGGGTCCCGACAAAACGCCAGAACCTTGACAATTCAATATTTTCAGAGTTTCGTTACTTGATGTTTCATATTTTCTCAATCGCTAAAATGGGAATTTTAAATTCCCCCGACAAAATCGGTTGTGGAAATAGCTATTTTATTGGGTTCTGGATGGCGGA # Right flank : ACATGCATGCGAAAAAAACTAAAAACTACAACCAAATAGGTTTTGCTCTAGAAATTCTGAAACTATTAGCCGAAAAACCACGAACAAGAGAAGACCTATCCCAATTACTTTCTGGCTTTCTAGAAAATCATGGTAAATCTGATGGTGATACACCTCAAAAACTAACTCGAACAGTTCGCAAACTCAGAGACTGCGGAATAGAAATTAAAAGCGCACCCCATCACCCCTACCAATTGATAGATGCAAACTTTCCGGTAATTCTTTCCCCCAAACAGCGAGAAGCTCTAGCATTAGCAGCTTATTTTTTAACCGATATGGGTTTTTCCGCTCAAGCTACCCAAATTTTGCGCATTGGGGACATCAAAAAAAGCGACATACCACCCCATCTCAAAGTAGATTTTAGTCCTCCCGCAGACTATAGCGATCGCCAACTAGAAGATACTGTCACTAAAATCCAAGAAAGAATCGAACAACAAAAACGTTATACAATTCGGTATCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACTTACTTAATCCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 52088-52775 **** Predicted by CRISPRDetect 2.4 *** >NZ_LMTZ01000094.1 Mastigocoleus testarum BC008 Contig-28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 52088 37 100.0 36 ..................................... TTTACAGGATTCTCAAGCTATCTAAGCCTTCATTAG 52161 37 100.0 34 ..................................... AAACTCTTCAAATATACCAATAATCTCACCTTGA 52232 37 100.0 36 ..................................... ATCGGTTTTTCAGGATACCTAGGATTAGATATTTAC 52305 37 100.0 36 ..................................... ACTCTCTCCTGGCCATTCTTTCTCCGACGGTTTACC 52378 37 100.0 36 ..................................... AACGGTTTAGTGATCGCCATATAAAGAAAGGCGGTA 52451 37 100.0 34 ..................................... CGAGCAATGGCCTTTGCCCCCATACCAGCCCCAA 52522 37 100.0 36 ..................................... TTCTGAGTTCCACGGCTCAGAAAATACGTAGTTAGG 52595 37 100.0 36 ..................................... TGTATTGTTTATATCTTTAGACTTTATTGAAGTCCA 52668 37 100.0 34 ..................................... CCGCCATTATTCGCTCGGTTGCCATTAACTGGGA 52739 37 81.1 0 ...................T.GAAA.A.........T | ========== ====== ====== ====== ===================================== ==================================== ================== 10 37 98.1 35 GTTTCTAATTACTTAATCCCGCTTGCGGGATTGAAAC # Left flank : TGAAAAAGCTATTTTATTTAATTATTTACGATTTACCCGACACAAAGGCAGCTAATAAACGCCGTACGAGATTACACAAATTGCTTTCTGGTTATGGGAAATGGACTCAATATAGTGTTTTTGAGTGTTTTTTAACCAAGTTGCAGTTTACCAAACTTCAGGTGAAAATAGAGAAGTTGATTAAGCAGCAGGAAGATTCGGTACGAATATACGTATTAGATGCTTTTGCTGTACGTAATACGATCGCTTATGGATCGGAGCAGCCGAAACATAATGAAACAATCATTTTGTGACTTTCTGCTACACTTATTTTTGACGGGAGAAAGCGAGGTCGAAAACCCTGGTGCCCCGTCAAAACGTCAGAACCTTGACAATTCAATAGTTTCAGAGTTTTGCTGCGAGGTGTTTCATAGTTTTGCGATCGCTGTAATGGAGTTTTTAAATTCCCCCAGCAAAATCGGTTATGAAAATACCTTTATTATTAGGTTCTGGATGACGGA # Right flank : TATCTCTCACCTGTTCCCCGTTCCCTGTTCCCCGTTCACCCTTAATAATACTCACTATCAATATTTCTAGAAGGTGGTGGTGTTGGAACCTTACCAGTATTACGAACATTAACAAGTCGATTAATCATATCAAACCAAAATGGTGCGCCCATAGAAATCGCAATACCACTAACTATCCAACCAACAAATATAAAACCCCAACGCAAAATTCTCTGCGGGAATAAATTTGGTCCACTAAAAGTCCAGCTAATAATTTTTTGAAATAAAGGAAGACCATCAGAATTATTATTTTGTCCTCCCTGTGCTCCTTGATAACTCATTAATGTCTTCACACCTGCTTGGGAGTTTGCTTCCGTTTCAGCTTCAGAACCCCAATCTAGTTGTCTTCGTAAATTTGTTTCTGTCCATCCCACAGGTAAAGAAATATCCGTTAATGCTGAGTCCGTTGATTCTTTGATATTTCTTAAATTAGCTTGCATTTGTTGTACTGTAATTCCAGT # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCTAATTACTTAATCCCGCTTGCGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //