Array 1 120333-118448 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRQ010000016.1 Streptococcus thermophilus strain Moz83 Contig_016, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 120332 36 100.0 30 .................................... CTGACGTTCTAGTTCAGCAGCATCAGCGAT 120266 36 100.0 30 .................................... TTCAGTTTGGCTTTTTATTTTAAAAAACAT 120200 36 100.0 30 .................................... GAAAATCGCTAAAGAAGCAGTTAAGAAGTT 120134 36 100.0 30 .................................... TGTGGCGCTGTCCTATGACCGTACTGGTCT 120068 36 100.0 30 .................................... GTTGACAGTTAAATATAGCTTTACAGGAAA 120002 36 100.0 30 .................................... GTCTTCTAATACAGAAACACGTTGTTGACT 119936 36 100.0 30 .................................... CCCATGACATCAAGATGATATCCCCTGTCA 119870 36 100.0 30 .................................... AATGAAGAAGCCAATTCAAGCGCAAGGGTC 119804 36 100.0 30 .................................... CGAAATAGACGCTTTAAGCATAATGGAAGT 119738 36 100.0 30 .................................... GCTCTTGGCTCAGCTCACAAAAGAATAGTT 119672 36 100.0 30 .................................... CTCTAGCACGCTAGTATGATCGTAATGACC 119606 36 100.0 30 .................................... TATAGAATACAAGAAGATTAAAACAGTACT 119540 36 100.0 30 .................................... TGAGATTGGTGCCTTAACACAAGATAAATT 119474 36 100.0 30 .................................... AACTACTTAGGAACAGTAGCGAGGGAGATT 119408 36 100.0 31 .................................... CCTTAAATGCCAACGGAATCCTTAAGATTAA 119341 36 100.0 30 .................................... CTTCGGTGTACACGCTCATTTCAATGGTTC 119275 36 100.0 30 .................................... CTAAAGAGCTTCTACACGTAGCTAGCAAGT 119209 36 100.0 30 .................................... CTTTCCAAACGTTACGATTTGATGTTGGAT 119143 36 100.0 30 .................................... AGCTATCTCCATTAGTTCTTGACGTCCCTT 119077 36 100.0 30 .................................... TCTTTTTCAGCAAACCATTTCTTAACACCT 119011 36 100.0 30 .................................... TGAAGAAATAGTCATGATGAACCCAGTTAG 118945 36 100.0 30 .................................... AATTTTAACAGATATAGTGTAATCGGTATT 118879 36 100.0 30 .................................... CTATTACTATACTTCCGAAGAGATTGCAGA 118813 36 100.0 30 .................................... AGTGTTTTTCTGAACACCGTTCACAGTCAG 118747 36 100.0 30 .................................... TTATATTTTTTTAAGGCGGTCAGTTTGGTC 118681 36 100.0 30 .................................... TCTTAAAAATTGAATATTAACGAAGTACAT 118615 36 100.0 30 .................................... TAACAAGCTGTACGACTTGTACTATCAGGC 118549 36 100.0 30 .................................... GGGTGCTGATATGTCTACCTCTGGTGGAGC 118483 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 29 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGAGAATTTTAGTATTCGTCAATAGCTTGTCGTATTTTTCTAAAGATGAAATTTATCAAATCTTGGAATATACAAAGTTATCACAAGCTGATGTATTATTTTTGGAACCTAGACAGATTGAAGGGATTCAACAATTTATTTTAGACAAGGATTATATTTTGATGCCCTATAATAACTAGTAAATTAGTAATAAGTATAGATAGTCTTGAGTTATTTCAAGACTATCTTTTAGTATTTAGTAGTTTCTGTATGAAGTTGAATGGGATAATCATTTTGTTAGAGAGTAGATTATAAGGATTTGATAGAGGAGGAATTAAGTTGCTTGACATATGATTATTAAGAAATAATCTAATATGGTGACAGTCACATCTTGTCTAAAACGTTGATATATAAGGATTTTTAAGGTATAATAAATATAAAATTGGAATTATTTTGAAGCTGAAGTCATGCTGAGATTAATAGTGCGATTACGAAATCTGGTAGAAAAGATATCCTACGAG # Right flank : TTTTGTTATCACAATTTTCGGTTGACATCTCTTAGAACTCATCTTATCATAAAGGAGTCTAGTATTAAAATATGAGAAGGAACATGTTATACGAATATCCAGCTATTTTTCACACGATTGAGGAAGCTTGCAGGATTAGTTTTCCCAATTTTGGTCGGATTATTCAGGTAGCTTCTTTATTTAATGTTATGACGAAATCGTCAGTATTTTTGGCTTATATTATTTATTATTATGTGGACCAGGTCTTGCCTGATTTGACGGCAGTAAGTAGTATTCCTAATGAGAAAGAGCTTGTGGTTTTGATTCAGTTAGAACTTGATTGACAGCAAAAAACTCTTGGAGGATAAATTTCCAAGAGTTTTAATTTTTATTAGCCACATAGACTCCAAGGACTACCAAGATTCCCGCTAAGATTTGTAACTGTGAGAAGGGCTCTCCTAAGAAGACTACAGCAGCTAGAATTGAGATAATCGTTGATATGCCAATGAAAGAAGCAGTTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 130341-132158 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHBRQ010000007.1 Streptococcus thermophilus strain Moz83 Contig_007, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 130341 36 100.0 30 .................................... CAGCACTAGCCGCAAGCCCTTGTATATTAA 130407 36 100.0 30 .................................... TAGAAATCAAGGAACTTGGATGAAAAGTAA 130473 36 100.0 30 .................................... ATATGAAAGGGAAATGATATGAAGAATGAA 130539 36 100.0 31 .................................... TTTTGGGATACAACACGCAGTCGTTGACTTG 130606 36 100.0 30 .................................... GTTTGAGATGCCAATGTTTTTCAATCCTTG 130672 36 100.0 30 .................................... GTATCAAAAGACGCATTCATGAAGCGAGCT 130738 36 100.0 30 .................................... AAAAACAATTGAAATTCATAATCAGCGCTT 130804 36 100.0 29 .................................... GCTTTTAACGTTTTAAGAGAATACCCTCT 130869 36 100.0 30 .................................... GTGACGCTGCAATGACTTGCCATAGTAATT 130935 36 100.0 30 .................................... ATACTGGTATATAGTAATTCATACTTCATC 131001 36 100.0 30 .................................... TTGGTTTCATATTTACTCCTTTGTGTTTTG 131067 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 131133 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 131199 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 131265 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 131331 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 131397 36 100.0 30 .................................... AGTAGAGAGACCAGCACACTACTGTACTAC 131463 36 100.0 30 .................................... CTTCGCACGAAAGTTTATTAGACAACTCGC 131529 36 100.0 30 .................................... TGATAGAGCTAGAATTGTCTTTTTTACCGA 131595 36 100.0 30 .................................... CTGATTTGGTCTTGTTCTTTTGTCCCTTTT 131661 36 100.0 30 .................................... GCAGCAGTTGAGAACTTTAGCGTCCAGTGG 131727 36 100.0 30 .................................... TGCTACTATGAAGGACGCTGTTGATACTTT 131793 36 100.0 30 .................................... TCTTCTTTAATCTTTTTTAACGTCAACGTT 131859 36 100.0 30 .................................... GTATCCATTAATATAGTAGCATTTCTATCA 131925 36 100.0 30 .................................... ATTCATTAATATCTGCAAGGATGTCTTGTT 131991 36 100.0 30 .................................... GAGAAAGTAGCCCATTCGGCCCATTCGGGG 132057 36 100.0 30 .................................... ACCATTAGCAATCATTTGTGCCCATTGAGT 132123 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== =============================== ================== 28 36 99.8 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : ATTGATGGCTTTATCTCAGAAGAATCTTATACTATTTTTTATAGGCAAATCTGTCATCTGGTCAAGAAGTATCCAAATCTAACCTTTATTTTGTTTCCTAGTGACCAAGGCTATTTAAAAATTGATGAAGAAAATAGTAGGTTCGTCAATATTTTATCTGACCAGGTGGAGCATTTGTATGATGTTGAGTTTATGTATGAAAGGGTAATGAAATATTATCCAAGTAATGATTTTCCGACGAGAGAAGGCTTTAGGATGTCTTTAGAAACTGTGACACCTTATTTATTGACAAAAATGCTGAGACAACCTAGTCTCTCACTTGTTGATTCAGTAATATTGAATATCCTAAATCAGTTGTTTCATTTTAGTTACCGTATAAGATATTCACAAACATCTGATGAAAAACTTTTACAGAAATTTTTAGAAAGTAAGGATTGACAAGAACAGTTATTGATTTTATAATCACTATGTGGGTATGAAAATCTCAAAAATCATTTGAG # Right flank : TTTGATTCAACATAAAAAGCCAGTTCAATTGAACTTGGCTTTTTAAAATACACGATAAACATAAGGATTGTCAGGCTGACTAACCTCTTTAATCTCAGTCAAATTAAGGATAGGGAGGCTCTGTTTAAGGTTTTGATAATAATTCACAGTGATGGTACCAGTGACTGTTACCCAGGTATTATCCTTAAAGGTTTGGTCGCTTCCTGTCGTTGCCAGTCCGTAAACACCTGAATCGGCGATACAGTGGATAATACCGAAACGGAAGATGAACTGATATCCCATGGTCTGTGGATCATTGTAAACAAAGCCGGTATAGGTGACCTTCTTGCCCACGAAATCGTTTGGATAGAGATAGATGAGCTCCATGACTTCCATGTAATTTTCCGTGGTAATCTGGATGGTCTCACGTCCCTTGTACTTGGCTAGCTCCTTGGTCATTTCCTTCTCATAAGCTGAGGAGGTGAAGTAGGAGCTGGTGTCCGGCCTTAAGTACTGGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //