Array 1 106514-104653 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDH01000004.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2673 NODE_4_length_270044_cov_3.00335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 106513 29 100.0 32 ............................. CGAATATATATGATATCGAATAACGAAGCAAA 106452 29 100.0 33 ............................. CGCCTGATCCCGGTACTCCAGAGTATTTCCAGT 106390 29 100.0 32 ............................. TCTAACACTCAAAGGTGGAATGACAGAGCCTT 106329 29 100.0 32 ............................. TTTGCCACGCACCGCAAACAGGCAGTCTTCAC 106268 29 100.0 32 ............................. CACGCCGCCATCACTGACAGCACAAAAACAAA 106207 29 100.0 32 ............................. GATGAGTACATGGAAAGCTTTAAGCAAAAGTT 106146 29 100.0 32 ............................. GCGATAGCTGTTTTCATAACGTGATCTCCAAT 106085 29 100.0 32 ............................. GGGTAAAAAACTATACGATCCGCGCTTAGGGG 106024 29 100.0 32 ............................. GGACAATTTGTGCTTTTGCAATTCACTTTGAA 105963 29 100.0 32 ............................. TTTGTATTTAAACAATAAGGCGAATTATGAAA 105902 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 105841 29 100.0 32 ............................. AGACGATGGCGGAGGCGCAGAAATCTAACCTG 105780 29 100.0 32 ............................. CTGATTGACATGACGTCCGGCGACGACTGGAA 105719 29 100.0 32 ............................. GTCTATAACCGTCGCCTCACGACTCGGCATGT 105658 29 100.0 32 ............................. CGCCCGGAATCAGCGCCGTCTATTGAGGGGTT 105597 29 100.0 32 ............................. AACGATATCACCGTACTGGCGAAAACGCTGCG 105536 29 100.0 32 ............................. CCCGATAATTCTATATCGGGCATTGATTACTG 105475 29 100.0 32 ............................. ACTGGCAGCACATAACCGGTTCGGACGCAGCC 105414 29 100.0 32 ............................. AGATTGAGCGCCGCACTAACCAGCGCATGATC 105353 29 100.0 32 ............................. GTTGGCAGCATGATCGCTAAATCTAAAATGCC 105292 29 100.0 32 ............................. GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 105231 29 100.0 32 ............................. GAGAGGCCGACTCAGCAACCAAAAAAGGGAAG 105170 29 100.0 32 ............................. AACGCGCAGCGCAGCAAAAAGCCGAGCTGGAG 105109 29 96.6 32 .............T............... CTGTTAACAGGGGGAATGCTGAAGCAGCGAAA 105048 29 96.6 32 .............T............... CGTGACTACTGCAACTTAAATCACGACGAAAT 104987 29 96.6 32 .............T............... TCTCTGCCGCTACCGCGCTGGACTGCGCCGCC 104926 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 104865 29 100.0 32 ............................. CCAGATCGCGCAAATCGCTGCGAGTATTCAGG 104804 29 96.6 32 ............T................ TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 104743 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 104682 29 93.1 0 A...........T................ | A [104655] ========== ====== ====== ====== ============================= ================================= ================== 31 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTAGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATACATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGAACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 123975-123154 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDH01000004.1 Salmonella enterica subsp. enterica serovar Derby strain BCW_2673 NODE_4_length_270044_cov_3.00335, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 123974 29 100.0 32 ............................. ACAACGCCGGGCCGGGGCGGGGGGCGGAAGCT 123913 29 100.0 32 ............................. CCGCATCATTACTGACCTGAACGCCCCGCAAG 123852 29 100.0 32 ............................. CCTGACAATTTGAAATACTCCGCTGAAATGAT 123791 29 100.0 32 ............................. TCAACGGCCTGCCGGGTAAATCGGTTCACGTG 123730 29 100.0 32 ............................. TTGACGAGCGGTGATGTGTGCCGGAGTGGATA 123669 29 100.0 32 ............................. TGATATGAGGCAAACGGCAGGTTACGCGCCAG 123608 29 100.0 32 ............................. TCTTTTTGCATCAGCGACCAGAGCCGCTTGTA 123547 29 100.0 32 ............................. GAGTGAGAATGTTCTTCATAGCAGGGGCAAAC 123486 29 100.0 32 ............................. ATGCGCGTAACGGTCATTATGTTAAATAGAAC 123425 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 123364 29 100.0 32 ............................. CCTCGCCGTCATTCGACATTACGTTCACTCAC 123303 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 123242 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 123181 28 79.3 0 ...........C...A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTGGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //