Array 1 1024-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGX010000017.1 Clostridium perfringens strain 3C19 NODE_17_length_60422_cov_78.7602, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1023 36 86.1 30 A...ACA...A......................... ATGAAATTATATTTTGTCTATAACATATCA A,A [1009,1015] 955 36 100.0 30 .................................... ACTTGTAATGTAGATTCAGTTCTTAATGTT 889 36 100.0 30 .................................... ATTAAGAAATTAATGGTCTGCTGCACAATC 823 36 100.0 30 .................................... GAAAATAATCTTTTTAATGAATTCCCACTT 757 36 100.0 30 .................................... TTAAGAGGAAAACTATGGGAAAAGCGTATG 691 36 100.0 30 .................................... ATTCTAAAGTAACTACATTAACTTCTAATT 625 36 100.0 30 .................................... AAGCAAGAGTTAACAGTTGTTAATAACAAA 559 36 100.0 30 .................................... CCAGGGACTACAGAATATATGTTGAAAATA 493 36 100.0 29 .................................... TCTTTTTTATCTACATCCCATATTTCCAC 428 36 100.0 30 .................................... TGTTTAGCTTGCTTAACTGCTAAGCAAAAA 362 36 100.0 30 .................................... GGGGTAACACTAACATATAAAGAAAATGAA 296 36 100.0 30 .................................... CAAATTCTTATGAAAAGTTTGTTGAAAAAC 230 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 164 36 100.0 29 .................................... AAACTATGAGTGAAAATGCTAAAGGTTCT 99 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 33 33 91.7 0 .................................--- | ========== ====== ====== ====== ==================================== ============================== ================== 16 36 98.6 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : AGTTTCTAAAAGCAGCAAGTCTATCCTTATTCTTAAAGAAAGTATTGTAAAAAGTAAATGCTTCCTTAAGATAAGGATTATTAACTTTCAATTCTCTCATAATAACAGTAGCTCTATCTGTAGAAAATTCCTCACTATAAGATAAAATATCATAAAGCCAATCTTCCTGTGGTTTAGGTTTTTTCATATTAGAATAAACTAGAATATTTCCATCTACATTTTCTTTTTCTATATGATATTTAGTATAAAAAGCATTGTTATCATTTAACTTAATAAGCTCAACACCCTCTAAATCAAATTCATCTATCTCTTCAGTAAAATCCTCATTTTCATCATACCAGAAAACAATATGACGTACTTTTCCATCACCTAATGGTTTTGAAAAAATATCATTAAGGAAATTCTTAATTTCTTTTAAGTTCATTTGTCACCTCTAAATAAAATTTTATAAATATTTTTTAAATTAATATATAATAATATAATAACTTAAAAGTAATAAA # Right flank : T # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 76855-74717 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACOGX010000014.1 Clostridium perfringens strain 3C19 NODE_14_length_76854_cov_86.9693, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 76854 33 91.7 30 ---................................. ATAGGACTTTTTTTATTATGAGAGTTGTTA 76791 36 100.0 30 .................................... CATAAAATGACAAAGGAAATCAAAAATGAG 76725 36 100.0 30 .................................... ATAGGACTTTTTTTATTATGAGAGTTGTTA 76659 36 100.0 30 .................................... TTATAAAATTTAGGAAGATTAGTTACAAGT 76593 36 100.0 30 .................................... GCTGTAGAAATAGCCTCATCTCTTCTTTGT 76527 36 100.0 29 .................................... ACATAGAGTTTACGTATGTAGTAGATTCT 76462 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 76396 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 76331 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 76265 36 100.0 30 .................................... CTATTATGAAAAGACTAGTATTAGAAGTAA 76199 36 100.0 30 .................................... AGGATTTTGATAAGAACATAAGAGAAGGCA 76133 36 100.0 29 .................................... CCAAAGCCTTAAACTCATCTATAAAAAAG 76068 36 100.0 30 .................................... TATTTTTTGTAACATAATACACCCCCAAAT 76002 36 100.0 30 .................................... AGCTGAAATGCTTAAACCTATTACAGACGC 75936 36 100.0 29 .................................... TATAAAACTCTTGAATAACACTACCATTA 75871 36 100.0 30 .................................... GTTTCTTTAGTCATATACTTTGTTATATAA 75805 36 100.0 30 .................................... TCTCATTATCGAGAATTATGCCACCTTCTA 75739 36 100.0 30 .................................... TTTGAGTTATTAATGTTTGATGAAGATATT 75673 36 100.0 30 .................................... GAACTTATAGGAGCAGTATTAACAACAGAA 75607 36 100.0 28 .................................... GCATGAATTAATAATGGCTCAATTTGAA 75543 36 100.0 30 .................................... GATGAAATAAACCAAGCTAAATTGAAGTTA 75477 36 100.0 30 .................................... AACTCTTTCTTTAGCTCTAATCCTATAGGT 75411 36 100.0 30 .................................... GATGTTGAGGGAGATGATGTTATTTTAAGA 75345 36 100.0 30 .................................... ACTGATAATATGGGAGTTAAACATAAATTG 75279 36 100.0 30 .................................... TTAAGAAAATTATACCACTTTTGAATAAAG 75213 36 100.0 29 .................................... ACATAGGAGAGGAAATTGAGAGATTACCC 75148 36 100.0 30 .................................... TACTTATAATTATTTAAATAGTGCTAGAGT 75082 36 100.0 30 .................................... GAGAATGATGTTGCTAATAATGAAAAAATA 75016 36 100.0 30 .................................... TTAAAAGGTGCATTAACTCCAATGCTCTTG 74950 36 100.0 30 .................................... GTAAGAATGGGATTTGTCTTGGCTCCTCAT 74884 36 100.0 30 .................................... TTATATTAGTTACTCAAAATGATAGGCTTA 74818 36 100.0 30 .................................... AAGAGTTAGTACGGAGGAGCAGAACGAAAG 74752 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.7 30 GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Left flank : | # Right flank : AGGAACTAATGAACCCCTTGAAACAACTAATTTCAAGGGGTTTTTACTTTCTAAAAAACATTCAATTGTCGTGAATTTATCTTCTTTTCCTGCTTTTTTGGTGATCCTACTAAGAATTTCATTTCTGTATATTGCTTTTCTGTAATCTGAAGATATCTTACTGATCCTTTTGGTGGTAAATTTTCTTTTAGTCTTGCTACATGTTTATTTACTCCATCAATACCATTACATATTCTTGAGTAAACAGAAAACTGAATCATTAAATACCCATCATTTAATAAAAATCTTCTAAAATTTTGATATTCTTTTCTATCTTCTTTTTCAACAACTGGCAAATCAAAAAATACAAGTATTCTCATAAACTTTTTACTCATAATAATGATATTCCAAAGGCTTTATCTCTGGTAATTTTAATAATCTAAAATCTTTTTTACTGCAAGCTGTTGTATAAGAAGATATCATTTTATCAATTCCATTTAAAATAGAATGATTTTTTCCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTATAGTTCCTAGTAAATTCTCGATATGCTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //