Array 1 72866-73663 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAE01000004.1 Listeria monocytogenes strain LM36 NODE_4_length_249274_cov_42.676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 72866 29 100.0 35 ............................. ACGATTGAAAAACTGCAAAAGGTCGCAGACTTCTT 72930 29 100.0 37 ............................. TTTCCCACTACTGCCTTAAAATGCGTGCCTGGCGTGA 72996 29 100.0 34 ............................. ACATGCGACACAGTTCGCGGTGAAATTCCGCAGC 73059 29 100.0 36 ............................. ATCTCTATCAATTGGCAAAAGTGAATTTGTGGTAGT 73124 29 100.0 34 ............................. TTTCCATTTGCACCAGATTCATAAGTTCCGTTGT 73187 29 100.0 35 ............................. TTGTCATCATATTTAAAAACTTTTATTAACTCACT 73251 29 96.6 34 ..............T.............. ATTTTTAACATAAAAAATAAGCCTACTCGGCTTT 73314 29 93.1 35 ..............T...A.......... GCGCTCTTATTCTTAGAATGCAATCCCGCGTCAAT 73378 29 93.1 36 ..............T...A.......... ATGTGTAATTTTATTGGCTTCATTGATTAGTGTTTC 73443 29 96.6 35 ..............T.............. TTATGACTTCATCACCTTCCATGTAACACTATTTT 73507 29 93.1 35 ..............T...........G.. ATCACTCCCGGCTTATCTAGCGGATTCCCTTGTTT 73571 29 96.6 35 ......T...................... GGAATCACGGACAGTCAGGCGAAGATAACTAAACT 73635 29 79.3 0 ......A.......TCA.A....A..... | ========== ====== ====== ====== ============================= ===================================== ================== 13 29 96.0 35 GTTTTAGTTACTTAATGTGAAATGTAAAT # Left flank : GGCGTCCGTGCCACTACTTCAGCTGACATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCTGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGTAAAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTGTTATCTGTCGACCTTGAGTAGTGTGAAAAATACCGGAGACCGACAGAAAGTTGTAAGTGGCTGGGGGAAGGGAGGTTTGGCGGTATTTGCTTGGGAAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGCGG # Right flank : TTCCTCCATACACAACTCCACCACCATCCATCAAAACCAAAAAAAACGTGACTGCCAAACTCGCAGTCACGCTTTTTCTCAATCATTAAACTCTTTCAAAACATCCTCTTTAATTTCAGTATAATTGGTTACTTCCTCTTGCTCCTCGGAAATAAAATTATATGCTTCTACTTCTCCCAAATTCTCGAAATCGGTAAGCGTAGCGTCTGTTTCTTTCAAGTCTTCATTAAATTTGCCGTAGCCCATGCTGATAATCGAACTTAGTTTTTCGCTGTCATGTCCACCGCGTAAAAATAATGTATATTCTTGCTCTTGCTCAAGCGCGATATAGTTTTCAATGGATTCATACGCACCTTCATTTAAATACCAAGGCTCTGAAACGTCAATTTTGTCGCCTTTTTTGAAAGTGCCTTTGTAAGTTTCTAAAACTTCGACTTCACTTATAGTGCTGCTATATTCCATTTTTTCTTTATCGTAATCGCCAATTTTCTTATTTTTCA # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 89263-90008 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDAE01000004.1 Listeria monocytogenes strain LM36 NODE_4_length_249274_cov_42.676, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 89263 29 100.0 35 ............................. TTCGCTAAAATCATAGCAAGCTCTAATTCAGCAGC 89327 29 100.0 38 ............................. AATGAAATCGATGGAATTAAGATTACAAGAGAAGATCC 89394 29 100.0 35 ............................. TTTGCTCTTACTACATGAATATTTGTACTACTCAT 89458 29 100.0 35 ............................. ACTGTCAGTATTCTTGTTGGGGCGGTTCTAGGGGC 89522 29 100.0 34 ............................. GTTATATCTGTTTTACTAACTTCTACATCTCCTT 89585 29 100.0 37 ............................. CACGAATCAATTCGATTAACATGATACGGACGTCCCG 89651 29 100.0 35 ............................. TTTGACATGTTGTAGGCGTTAAAGAACAGCTTGGC 89715 29 100.0 37 ............................. CATGCTACTAGTAATAGTGAAAACGATAGTACCATCA 89781 29 100.0 36 ............................. GGTGTTTAGCACGAATCAATCATCCAGGTTCACAAA 89846 29 100.0 37 ............................. GATGTATCAGATACTGAAATACTTCTGATTTGACAAG 89912 29 100.0 38 ............................. ATGATATATCGCAGGATAGCGTCATTAGCATTCAATCC 89979 29 86.2 0 ...............C......CA....C | C [90001] ========== ====== ====== ====== ============================= ====================================== ================== 12 29 98.9 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGGTATGTATGTAATTTTAATTTATGATATTTCAATAGAAAACGGTGGGGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCGGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTGATTGTATTTTCTAGTAGGCAACAAAGGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGTAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGGAAATCTGAAGGGATAAGTTATGATTTTTACGCGATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : CTTCCTCTCAACATCCAAACTCCAAAAATAAAAAGACCTGGACCTCAATCCAAGTCTTTTCCCATACCACCTAAACCAACAAAACCACAACCAACGCCAAAATCGCCGGCAAACCCTGCTTCACCAAAATCCCTTTAGAAGAAGTCAGCCCGCCAAACAGCGCCGCCACAACTACACAACTCAAAAAGAAAATCTGCACAGTTTCAGCAAACCCTGCACCTGCAAAAAACAACCCCCACACAAGCCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAACAGCGTTTGCACTTTCTTATTCGCAAGCAGTTCCTTCTCCACGCCAAATGTCTTGGCTGCGAGTTTGGTGTTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCAATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //