Array 1 3911127-3910979 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087392.1 Pectobacterium parvum strain FN20211 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3911126 28 100.0 32 ............................ AGTAACAACTAACACAGAACAATTGATAGTTG 3911066 28 100.0 32 ............................ AGGTAATGCAAAGCCGCTATGCGCCCTGGATT 3911006 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GTTATCGCTCTGCGCCAGATAAACGTTGGGCTGATGCACGTGTTCATCAAACATACCTCGGCAGCGCTAACGATTAATGAGAATGCCGACCCCACGGTGCGGCAAGATTTCGAGAGTTTCTTTAATCGGTTAGTGCCGGAGAATGAACCGTACTACCGTCATACTTATGAAGGTAGCGACGACATGCCCGCGCACCTGAAAGGCAGCCTGCTGGGCAACAGCCTGATGATTCCCATCACCAACGGACGCCTGAATATCGGCACCTGGCAGGGCATTTACCTGTGTGAACATCGTAACCACGGCGGCAGCCGCTCGCTGGTTGTCACACTCAACGGGGAATAGCTCCCGAAATGCGTCGCGCTAGCGACGCATTCTGATAAGTATCTAGCTGCCTGTACGGCAGTGAACCGCTGTGTTGTTATGGGCACTACGCAATGTTTCTAAGCTACCTATACGGCAGCTTAGAAAATAATCGACCTGAACCTTTGTTTCCTTCGTTT # Right flank : ATAAAACGTGCTGAAAATCAGCAATAAAAAACTCATAGGCAACGTGGCTTAAAAAGCTGGTAGTCTGTTTGGCCGACTGCCTGATACTGTTTAGGAAACGCGATGTACCACATTGATGACTTCGATCTGAAAATCCTGACGCTGCTACAGACGAACGGCCGCTTGACCAATCAGGAACTGAGCGATCTGGTTGGGCTTTCCGCCTCGCAGTGTTCCCGCCGTCGCATCGCACTGGAGCAGGCACAGATGATTCTTGGCTATCATGCCCGCCTGTCGCCGAACGCGGTCGGGCTGGAATGTCTGGGGTTGATTGAAGTGCGACTGATCAACCACACCAGCGAATACGTTGAGCGCTTTCACCAGATGCTGGGGGAAGTGGACGCCATCATCGACGCCTATAAAACCACGGGTGATGCCGATTATCTGTTAAAAGTCGCCGTGGCAGATCTACCCGGACTCAGCACGCTGATTAGCCAGATTCTGTCGCAGAACAAGAGCGT # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 4419240-4418845 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP087392.1 Pectobacterium parvum strain FN20211 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4419239 29 100.0 32 ............................. AACAAATGGCTATGCTGGAAATGGCGGTAAGC 4419178 29 100.0 32 ............................. TCTGGCAATCCATTGATATCAAGAGTATTCCC 4419117 29 100.0 32 ............................. GGACAGTCGCATATTACCCTCCAAGCCAACGA 4419056 29 100.0 32 ............................. TCCGCAAATACTCACTCAATGCATCACGAGTA 4418995 29 100.0 32 ............................. CTCGGGATGAGAGCGCTTATGTCGTTCAGCTA 4418934 29 96.6 32 ................A............ AATGACTACCTTACTAAAACGGCAACAGCTAA 4418873 29 89.7 0 ............TT.............T. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGATTGAGGAAGTCTTGTCTGCGGGGGGTATTACGCCACCGCTCCCGCCGGATGATGCCCAGCCACCGGCGATCCCAGAACCGAAACCGTTTGGTGACAGCGGCCACCGAGGGCAGGGTTAAATGAGCATGCTGGTGGTTGTGACGGAAAATGTCCCGCCGCGCCTGCGCGGCAGGCTGGCGGTGTGGTTATTGGAAATCCGCGCAGGCGTGTATGTCGGTGACACTTCACAGCGGGTGAGGGAGATGGTCTGGCAGCAGATTATCGAACTGGCAGAACAGGGCAACGTGGTGATGGCATGGGCGACGAATACGGAATCCGGCTTTGAGTTCCAAACCTGGGGCGAAAACCGCCGAATGCCGGTAGATCTGGATGGTCTCCGGTTAGTCTCTTTTTCACCTATTGAAAATCAATAAGTTAGCGATCTTTAACAACATGGGAAAATCGGTAGAATTTTTTATGCCGAAAAAAGTATTATAAAACAACTCTCTATCTTTAGA # Right flank : ATGTGAAATGTAAATTACACATATTTCCATATTGTCAACTTGTTCTGTTTATGGCATGGTGTTTCCAATTTGGAAATACTAGGGAAGGCATCAGAATGCATGTTATTTCGCGGGCACCTTTCGACACTGCAACCACTCAGTTTCCGAATCAGGCGGCAGCACTTGATGACCTATATCGGGTTATCAAACGCGAAATGTATGCAACGCCGGACGATATGAAAAAACGCTTCCCCAGTCTAGATAGGATGAAATATCGGGAAAAATGGTGGGTTATTGATATTGGTGGCGGGCATCTTCGAGTGATGTTTTTTGCTGATTTTGAGCGAGGGAAAATCTTCATCAAGCACATCACATCCCATGCAGAGTACGATAGGCTGACAGAGTATTACCGGAGGAATAAAGAATGATGTACGCAGACGCCATCAAGGCAGCTAACAACCTGACGAGTATCGTACCATTCCTCGGAGGCAGCGCCTCTCGTAAGGATTATGAGGATGCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //