Array 1 74993-77453 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJNTV010000003.1 Lactobacillus delbrueckii subsp. lactis strain DSM 20355 DSM20355-i1-1_scf3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 74993 33 100.0 38 ................................. AATCGGCCTGCAGGAGGGCGTTTTGGCCAGTTGACCCG 75064 33 100.0 33 ................................. AATCCGTCGCGCTTGATTACTAAGTCAACCGCT 75130 33 100.0 34 ................................. TGGCTACCACCGGCCTTAGGAAAGGCGAAGCACT 75197 33 100.0 35 ................................. CGGACTTGGCCCTTAATTAACTCCTCTGCGCTACC 75265 33 100.0 34 ................................. ATCGGGTCATTTGCACCGTAAAAGTAAAAAGCTG 75332 33 100.0 33 ................................. TTAACCTCATCGACAAACTGGTCGTGCGTCCGG 75398 33 100.0 33 ................................. ACGGTCAAGGTCTACGGCCCTGAAGCGAGGGTT 75464 33 100.0 33 ................................. TGTAGAAAGCAAAAAGTGGATACTTTAAGCCAG 75530 33 100.0 36 ................................. AGAATTAGAGCCAAAGTTGGTCTGCATCTCTGCCCC 75599 33 100.0 35 ................................. TTTAAAGACATGGTCACCCAGGCAACTGAATCCTT 75667 33 100.0 33 ................................. ACAGTGTCCTCCGGATCACCCCCACAGAAGTGA 75733 33 100.0 34 ................................. TGAGCTCTAACCCCGTTTCCAGCTCTACGTAGAG 75800 33 100.0 34 ................................. CCAGCAGACCAAGGAAATCTTTAACTCAGTTGGC 75867 33 100.0 38 ................................. ATTTACCGCCCAAACAGCCAACTTGCCAATTACATCAA 75938 33 100.0 35 ................................. TTCCAGGCCCCGTAAGCAAGCCTTAGTTCGGGCTT 76006 33 100.0 35 ................................. CATAACCGTGTTTCCACTGCTTAGACTCTCGCCTA 76074 33 100.0 35 ................................. ATGTCAGTGATGTATTTAGCATGATTGACCGTTAC 76142 33 100.0 35 ................................. AAACTTTACTCCAGGATTATGACCTGGAATGCGAC 76210 33 100.0 38 ................................. ACATGAAACAAATATGTCTGGTCAAAAAGCAGAACCAG 76281 33 100.0 33 ................................. TGGCATGTCCATTGGGGTTGGAACCAAGGAGAA 76347 33 100.0 33 ................................. TCTACCTGGGTGATGTAGGAAGATCTGGTTTGA 76413 33 100.0 35 ................................. AACATCAAAAACGGCAGAAATGTAAAAGTTCCGGT 76481 33 100.0 34 ................................. TCTTGCTCGGTGCGGCTGTCCTGGTCGTAGCTGT 76548 33 100.0 37 ................................. CAAACGTAAGCAGCATTGTCTGAAAAGTAGAGGTCGC 76618 33 100.0 34 ................................. GGCTACGGCGACACGGAAGACGCGTCACAGCCTG 76685 33 100.0 33 ................................. TGTGGATCCTTAGCGCCATCTACCTGAATAGCG 76751 33 100.0 33 ................................. TTTACCACCGTCACGCTTTTCTTGACCTTTTTG 76817 33 100.0 36 ................................. AACTACTACTACCAGCACCCAAACAAAAGACTTTTT 76886 33 100.0 33 ................................. TGCTGCTCCAGGCTGAGACGCGTCTTCCGTGTC 76952 33 97.0 33 ....................T............ AGTTAAACAAACAGCCGACAGCCTCAACGCCTA 77018 33 100.0 38 ................................. GTTCTCCGTAGCCTGGCAAGGTGCCCAAGAATCTGTCC 77089 33 100.0 33 ................................. GTCTTTCTTTGTTGGGACGTGCAATTTGGTGAT 77155 33 100.0 34 ................................. ACTGCCGACCGCTGCCACGTAAACTGCGTCTTGA 77222 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 77288 33 93.9 33 ..............................G.G GCTGAAGGGAAAGTAGCAGCAGAAAGAAGAAGC 77354 33 100.0 34 ................................. ATTTGCTGGTACAAAAGTAACAGAGTTACAACAA 77421 33 84.8 0 ..........A...AA....T......C..... | ========== ====== ====== ====== ================================= ====================================== ================== 37 33 99.2 34 GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Left flank : CGGATACCCTCCGTTTTTATGGAAGTAAGTGATTGTAGATGATGATGGTAATTGTCAGTTATGACGTGAATACTGAAACTGCTTCGGGAAAGAAGAGACTAAGAAATGTTTCCAAAATATGTAACGACTATGGCCAAAGAGTTCAAAATTCAGTATTTGAGTGTCTTGTAGATTCTACAAAGCTTGAGGAAATGAAGGAACGCTTACTAAAGGTATATGATGAAGAGTGCGACAGCTTGTACTTCTTCAATGTAGGCAAAAAATATGAGAACAAAGTTCAGTCTTATGGGTGTAAACAAGTATTAGACTTGGGAAAGCCAGTTGTCTTCTAATTATCTAGACAGTGCGAGTGTGAAGCTAACAGAATTAGGCAGAGGATTCGCACTGTTTTTGACTATTTTTTTGTAGTCTTGAATATAAAATTGCAGTTTTTTAATGCTTTTTATATTTTGTATGCCCAATATTTAGCTGTGAAAATGCTTTTTTAACTAAATGTTGCG # Right flank : TATCGCTTAGATATGTGGATGCTTGATGGTCAAATTCCACTAAAAGCACTCCCTCGCGGGGTGCTTTTTAATATTTTGCTAAATCAAACGCTTCACCAAGCAAGCAGGAAAAGATTATAGTAAAATATACTGGTTATAAAAAAGCTGAGTCAAGCTCAGCATCCCCAAAACAAAACTTAGTTGAGGAGAATAAACATATGCAAGATATTTATATTGTTGCGGCCAAGCGAACTCCATTTGGCCGTTACCACAAGCAATTGGCTGACTTTTCCGCCATCGACCTGGGCCAAATCGCCCTGCACGGCGCATTAAAAGAAGCCGGCCTTGACGCCGAAGCCCTGGATGCCCTCTTCATGGGCAATGTCCTGTCTGCCGGCTTAGGCCAAAACATGGCCCGGCAAGTTGCCCTAAATGCCGGGATGCGGCAGGACTCAGTCGCCGTGTCCATCAACGAAGTCTGCGGTTCCAGCCTCAAGGCTGCCCGCCTGGCTGAAGCTCAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCATCCCGCATGGGATGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCATCCCGCATGGGATGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.40,-9.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //