Array 1 1178761-1178300 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 1178760 36 100.0 34 .................................... GTTTTTTTTCCAACGCCTAAGACCTGGTAAAGTA 1178690 36 100.0 36 .................................... ACCAAACAAACAGACGAAATTAACAACGACACTTTT 1178618 36 100.0 35 .................................... GTGTATTTTACACAGCATCACAAGCTAATACTGAC 1178547 36 100.0 34 .................................... TCCAACAAGTTCAACTCTACTCCGTCGTATTGCT 1178477 36 100.0 36 .................................... ATTTCCGGGTAACTGTCATTGAATAGTTGTATATGT 1178405 36 100.0 34 .................................... TATTCTTTAGCAGATTTTTGTGTAGAAAAGATAG 1178335 36 94.4 0 ..............................A....T | ========== ====== ====== ====== ==================================== ==================================== ================== 7 36 99.2 35 GTGCTGTAACCTTAGATGCCGTAAGGCGTTGAGCAG # Left flank : TGTCAAAAACGATGGCGTAAAGCTTATAAACTCATAGAAGGATACGGGCAAAGAGTTCAATACTCAATATTTCGCTGCTGGTTAAGTCAACGCACGCGCGAAAAGTTACGCTGGGAATTAGAAACAATATTAGCTAGCGAGGACAACATCCTATTTATTCGTCTAAGCAATCGCTGTGTCGAAGATATTCCTAAATATAACCGCCCTGGAATATGGCAAAATCGAGACGAACCTTTTTTAATCGTCTAAAATTACAAGCACCTCTGAGTGTGAAACCAAAACAGACACCTTTTTACCCAGAAGACTTGTAGCAGAATAGCTGACTGCCTCTTTAACTCTTTAGAGGTGCTTGCAAAATGCTGAAAGCCTTACCAATAGTGAATTAGAGAAGTTGAATTTTTCTGTTTTATCACATAACCAAATGCTGTAATAGCTTTTTGCACCAGGTGCTTGTAAAATCGTCTAGGGAACTGCGCCATATAAGGATTTTGGAAGGCGCC # Right flank : GAACTGCCATAGCTAACCCCAGAGTTGCAAATTGGGGTGTAGCCTTATACGGTTAATTAATAATCGGCAATAATAAAGCCACCACTAACTAAAAACCCATAAACAAGTAGCCCAAATACATAAGCGATATTTACACCACCGATAATAGAAAACAACTTAATTAAGTTTTGACGGCGCCAATTAAGCGTCAAAATTAAACCAGTTAAAAGGATTGCCAATAATGCTGCAATAAGCATCATTTGTGGTTCATTCAAATCCCTTAATATACTTGTTACTGGTTTAATTCTGTAAAGTTGAACTAATGCTTGATAAAAAATATTTAACCCAATGGCTAAATTAGCAAACGTCCGTATGTATTTGTTCGGATATTGCCAAATGATAATTGCCGCAACGATGCCACAAATAACTGATAAAATAATTGATATATTTGACCAAGTATTTTGATTGAACTGAGCAAACCAATTATCTGACTTTAAAGTTTGTAATTGCTGGCTAGTCAA # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTGTAACCTTAGATGCCGTAAGGCGTTGAGCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 1190191-1191370 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 1190191 36 100.0 36 .................................... TTGAAATTGAAGAAACCCCCAATGAAAAAGAAGATT 1190263 36 100.0 35 .................................... ATGTTCTGGAACGAATGCTTCGCAACCTGTTACGG 1190334 36 100.0 37 .................................... GAAGCACTATTACTATTTTTGGGTTTAATTGATAGAT 1190407 36 100.0 37 .................................... TCGAATACTCTGGGGTCGAGTGGCGCCACTTGTTGTA 1190480 36 100.0 37 .................................... AATAGTTTTTATGTCAAAGTTATCTCACGACAAAAAA 1190553 36 100.0 35 .................................... ATTCAAAAGTACTAAAGTCAAAGTTAAGTAAATCC 1190624 36 100.0 36 .................................... GATTCCAGCTTAATAAATCAATTAAAGTTTGCTCAT 1190696 36 100.0 36 .................................... ACTTGATTCTAATAAACTACCCAACGCATTACTGTG 1190768 36 100.0 38 .................................... AATGCAACTACCTCTACCGCACATCTGAATAAGGTTAG 1190842 36 100.0 35 .................................... TTTGGTAACATGTGATAGCTCCTATCTAGTCAATC 1190913 36 100.0 36 .................................... CTTCTGCTTTTGGTCGGTCACTATAGTATCTTTCAG 1190985 36 100.0 35 .................................... TATCCAAGCCTGAAGATTCTCTAGAGGTTTGGATA 1191056 36 100.0 35 .................................... CGTAATATCTTGCCGTTGTTGCTTCTGTATCGTTC 1191127 36 91.7 36 .............A.T......T............. GCATCCTCCACATATTTTGCTGTTGGTATTTCTGTG 1191199 36 91.7 28 ...............T...........A.......T CAACACAATCTATTAAGGACGGTGACTG Deletion [1191263] 1191263 36 86.1 36 ...........T...T....A.T.........C... ACAAAGTAGTGAATATCTCACGCTGGTTTTTTTGCA 1191335 36 83.3 0 A...C......T...T...........A....C... | ========== ====== ====== ====== ==================================== ====================================== ================== 17 36 97.2 36 GTGTTTAACCTCTGACTACCGTAAGGTGTTGATCAC # Left flank : TTCTTTCACTGATTTCCAGTGCTTTTGCTAAACTAGCAGTTGTTGGTCGTCTGGTAGTTCGGATTAATTTATCAATTTCTAACAAACGTTCAAGATGCCGAGACATAGTACCTATACCCTGATTGATATAGCTATCCTAAAAGAGATACCCGGCAAAAATGCTTCCGTCTAAAAAAGTTTTTAGAAATATATATTTGGTAATTATCTGTACATATTTGTTTAGATTGTGTATTTCAGACTGCAAGCACCTCTGTTTGTAAAGCCCTATTAATAAACAAAAGTAGTCACAAGCCTTATCTGATGAGCGCTTTACCTAGAAAAAATAACTGATGGGTGCTTGCAAAATTGCTATAGTACTTATACTGTAAGCTTTGTAGCAATTGTCAAATTATTGTAAAAAAGTCGTTTCAGCGATTTTTTTGTTTGGGGTTGTATCGTTACCAGTGGTGCTTGTAAAATTGCTGAGGGAAGCACTCAGGGTAAAGATTTTCAAGCCCGCT # Right flank : CAGACGTAATTGTGCGTGCTTAGGTTATAGATATTATGATTACGGCGCCTATAATTGAGATTGAAAATGCGCCCAAGGGAGCGTTCACGCCAATAAACTCCAATTTAAGTCATAATATAAACAATCGTCATAATTCTAAGTTCTATGGATGTTACTAAAACGATTGATGCTCAAGTAACGTTGCCAATAGATTTGTATCAGGCGATTGCCCAACAAGCGCAGGCACATGGGCATTCGGTAAGTAACGAGATCGTAGCATTGCTGGTTCCAATACTGGGGCAAAATTCTCTTGAATTGGCTAAAGAGTTTGCAGATTGGGAAGCAGCAAGTGATGAAGATTGGCTAAATATCGAACAAACACTGCTATCTGAGGAGAAGTAGATGGCAAGGGGAGATGTTCTTTTGGTTAGTTTGCCTGATTCTGATAAACGAGAGGAAAAAGGCAACCGTCCAGCGATTGCAGTGCAAACTGATGTAGCTAATTCTCCGATGTTAATGAT # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTAACCTCTGACTACCGTAAGGTGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.30,-4.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-17] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 2363729-2362971 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 2363728 37 100.0 35 ..................................... GCTCTCTGCCTTTCTCAGCTTGCTGATGGCGCCAC 2363656 37 100.0 34 ..................................... AAAAATTCGGTAACGAAAAGCGACCTAGCTTTAG 2363585 37 100.0 38 ..................................... GGCGCCGATTGGAGCGAAATGTTGTCGGCTGTAAAAAA 2363510 37 100.0 36 ..................................... ACGAAAAATTGGGTACAAAGTGCATGGGGAAATTAT 2363437 37 100.0 34 ..................................... AAGTCAATAATTTGAGCAATTTCTTCAATCGTGG 2363366 37 100.0 33 ..................................... CAATTTTGCCCAGATACTACTAAAAATTCGTTT 2363296 37 100.0 36 ..................................... CTAATAAACCTTTAGCTAGAGGACAAAAAATAACAG 2363223 37 100.0 35 ..................................... CGATAGCGGCATTTTGAGTATTGATACGACACCAA 2363151 37 97.3 34 .......................G............. TGGGCAATGGCGACAAACTCGTATAGATAAACAG 2363080 37 94.6 36 ...................T...G............. AGTAATTATTGGCTCTCCAATATATCGGCCAAAAGC 2363007 37 86.5 0 ..........T........T.......TA...T.... | ========== ====== ====== ====== ===================================== ====================================== ================== 11 37 98.0 35 ATTGAAATTTCAAATAATCCCTTAAAGGGATTGAAAC # Left flank : AACAGTATAAAAATGCCAAAAATCACAACAGAAACATATTATCCACTTTTGTTACATCATACTTCCACTAACGGCGCCGACATGTCATACTGAGGAACGAAGTCAAAGTAATGAATATCAAAGTAATCAATTATCTGCCCCGGAAGTCTGACATGTCATGCTGAGGAACGAAGCATCTTTAAGCAATGCTAGCGATAATATAAACCCAGAGTTAGTGTAATTGTACCTAAAATTCCAAATTTTCCAACAATACCGCGAACCGTAGGGTGTTTTTCAAGCAGATTTTTAATTGACGACCAAAACACTTACCCTGTGGTTCTTTGAAGCATTTCAGCAGTTTAAAAGGTTCGCGGTAACTCTGAAACTCCTATCATCTATACATTCCAGCTATTTTTACCTATGCTTATCTTGACACACCAATCTCCAGAACGCTATCCTTATTCCAGGTTCGCGGAACAGCACCTTGAAAACCAAATATGTCAGTAGTTCTGAATCAAACC # Right flank : ACTGTGCGTTCGCTCATTTTTATAGTCGAAGGGGAATTAATGCCTTGAGAGGAGAGGAATAGGGCAGTCAGTAAGCTTGGCACCATTTTCCAGTAATGTGTAAGACATATTCTAGTTCATGGTGTACGTATGTTGATAAGTGAAAAAGTAAAAATTGATTCTGAGAGAATTGATGATATTCCCGTAATAGTTGAATGGCTCAAACAGATGGAAGTGGCTAAATCTATTGACCAAAAACTAAGCCCACTACACGGAAACCATCAAGGGCTGAGTTACGGTCAATTAAGTGTATTGTTATTGACATATATTATTACTCAATCAGACCATCGCCTATGTGCTGTACAAGCCTGGGTCGAGGAACATCGTCATATTTTAGAGTTAAGTACTGGGTGGTCAATACGAGAAAAAGATACCACAGATGACCGATTGGGCGATGTAGTCGAAGAGTTAGGTATACAGTCAGAGGCAAGGCAGGAAATAGAAATAAAGTTAGGACGACA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATTTCAAATAATCCCTTAAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 4 3132260-3130514 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 3132259 36 100.0 36 .................................... TTGAAAAACGGAACAGTTCAAGGCAAACCAAGTTTA 3132187 36 100.0 35 .................................... ATTGTTAATTTCACCCTTAACGCGCGGGTCTAAGT 3132116 36 100.0 35 .................................... TATTGTAGCTTGTCTTGTATTGTCGCATCCTAATC 3132045 36 100.0 34 .................................... ATTCCTTCGCTATCGCGTGAGGTGCGCGCGTGCG 3131975 36 100.0 34 .................................... GTACGCTAATACCTTCTCTTCCTCGTCCCAAAAG 3131905 36 100.0 34 .................................... CAAGCGGTATCAATGCTTTTGGTACGGCAATGCA 3131835 36 100.0 37 .................................... AGAGTTTCAAGATTATAGGCTACAAAGAAGTTAACGG 3131762 36 100.0 36 .................................... CATACGTCAGCAATCAAAAAGTATCTTGTGTAAGAT 3131690 36 100.0 34 .................................... ATAACCGGAACAACAATTACCGTAAACAGGATTG 3131620 36 100.0 36 .................................... AAAGTGAAATAGTTTTATTAGGACATAGAGCATTAT 3131548 36 100.0 35 .................................... TTAGTCTAATCCAGAAAAGACAGTGTGAAGGACAC 3131477 36 100.0 35 .................................... CTCACAGTCGTTGCTACCGAAAGCATCGGTAGAAT 3131406 36 100.0 36 .................................... GAAAACTGATTGCTATTCCTCAGCCTCTTTAAATCA 3131334 36 100.0 35 .................................... TAATAGGAATATCAATAAAACTTTCAACTCAATTC 3131263 36 100.0 36 .................................... TTACTTCCTGTGAAGTTTGGGTTTACAAATATGCTG 3131191 36 100.0 37 .................................... TTGCTTGAACCTGTTAACAATATAAGCAGAGAATCGA 3131118 36 100.0 32 .................................... TATCAGGTGTTACATGCTCCATAGCTTTTGTT 3131050 36 100.0 35 .................................... AAAATTCACGCTCGCCTAAAGGTCGATTATTTGCT 3130979 36 100.0 35 .................................... CAGGAGTCGGAGAACAATGCCCACAGTTTCAAGTA 3130908 36 100.0 35 .................................... TAGAATCTACTTTTGCTGATTTTGCTGATTTTATA 3130837 36 100.0 36 .................................... TCTTTATCAGGTGATTTCTGCTAGTGGTGGTGATTT 3130765 36 100.0 35 .................................... TTGTTTCTATAATTTCGTCTATGTTTGTTGAGTAT 3130694 36 100.0 35 .................................... TATTAAGTTAAAAGAGTTATAGCAATTAAAGAGGT 3130623 36 100.0 38 .................................... AATATTATTGCGCTGTTCTCCAATCCTTTGAAATTAAA 3130549 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 25 36 100.0 35 GTGTTTAAACCTTAGATGCCGTAAGGCGTTGATCAC # Left flank : TGGCGCAAAGCTTACGGTTTGTTACAAGGACATGGGGAAAGAATACAATATTCAATTTTTCGATGTATTCTTAATCAGCGCAATCGCGAAAAACTGCGTTGGGAATTAGAGACAATTTTGGCAAAGGAAGACAGCATTTTATTTGTGCGCTTGAGTAACAGATGTTTGGAAGACATACCCAAATATAATCGACCAGGTGCATGGGAAAATACAGGTAAGCCTTACTTGATTATCTGAAAAATACAAGCATCTCTGTTTGTTGGGGTAATCAAAGCGGATGTAATCCCTGAAACCTTTGCCACTACAAGATTTGAGGTATTTTGACGCTCCCAGAGGTGCTTGCAAAATTTTCAAACACCCTTATATCAAGGGTTTTAGCCAATAAACTCAGCCAGGAATTAAGGAAAAATTGAAAAATTTTAGTTTGTTATTGGTTTTTTCAGGAGGTACTTGTAAACTTGGACTAGAGCGATTGCCATTCAAGCCTTTCAGCCGTCGCT # Right flank : ATACAGGCGCCACTATTCTAGATTCTGTTGGCAATGTGTTTAAACCGCCAAAAAATTTGGTTGCAAGATGCTCAAGAATTAACACTATACAGTGAAGATTTAGAAGTTGATGGAATTGTTAGGTACTCTACCGAAGAAAATGTTTGGGTCGCTGTAATTAATTGGGATGAGATTCGAGAGCAAGAAAATTACTTAATTCAAGAAAGCAAACTCAATCGATAATTTCGTTTTGTAAAGTTGATTTTAAAAATCAATTTGTTTGATTCAAAGCTTTACTTAAGATGCTATACAAATATCTTCTAAGTGTATTTGCCAGGACTTGTTAACACAGCAACGGGTTGACATGAGTGTAACTGTGGCGCCTGGTTCTAATAATAACTCAACCACTTTGGCGCCAGTTATTGGAGTAGTAACTTCTACTTTTTGGCTGGGTAATGTTTCAATTTGTCCGGTAGTTTTAATACCTACTGCTAATGGTTGACGCTTAACTAATTCGGTTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTTAAACCTTAGATGCCGTAAGGCGTTGATCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 5 3141579-3143450 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================================================================================================================================================== ================== 3141579 36 100.0 34 .................................... CTACTCCATCCATCATTTTCTTTAAAGAAAGTTT 3141649 36 100.0 36 .................................... TCAAATTTTGGATAGCGCAGGTGCCTTGCCAAGAGG 3141721 36 100.0 35 .................................... TGATGGTACATACAACTTTGACCAAACTGGGAGAC 3141792 36 100.0 37 .................................... TAAACTGTTTGATATCTTACCTGCGAGGTTATATAAA 3141865 36 100.0 34 .................................... AAAGAAAAACAAAACAAAGCAAAAAGAGTGAAAA 3141935 36 100.0 34 .................................... TAGGCGTCAAGGCATACAAACTCTTGCCGTTTGT 3142005 36 100.0 36 .................................... AATTCCCGTTTGGATTTTTCTTCGGTTCTCCCGTTT 3142077 36 100.0 36 .................................... TCGGATATGCTTCTATAAAGGTTGCTATTAATTGTT 3142149 36 100.0 36 .................................... AGCTACAACCGCATCAAAGAAGTGCTTACAGAATAC 3142221 36 100.0 36 .................................... TTATAAGTTTGCTCAACATCACCTTCGTCAGTGTAG 3142293 36 100.0 34 .................................... GAATACCATTTTAAGAATAAAAAGACTTCTTTTT 3142363 36 100.0 36 .................................... GGAACAAACTTTTTAACCCAGATATCACAGCTATAA 3142435 36 100.0 34 .................................... GCCAATGTAAGTAAAATAATATTGACGCATAAGT 3142505 36 100.0 35 .................................... TCCTGTTTCTGGCATTGCAGAAAAGTTTCCTTTTG 3142576 36 100.0 159 .................................... ATTCTTCTCAATACTGCTCGGTTAAGGCAATTGCGAAACGTGAAACTCCGCTCAGAGACGTGATTATTAAGAGCGGGACACTACGTGAACACGTCTCTACATACGTTAACCGAGCAGTATTGAGATTCTTCTTCCTCTATCGTTGGTTGTCCTACTTTT 3142771 36 100.0 36 .................................... GATTAGGACAGAATAGCTGTGAGCAACTTAATAAAT 3142843 36 100.0 36 .................................... GTTGTGATGGATGGAGTTAATACGTTTCGGAAAGTC 3142915 36 100.0 34 .................................... TTTCCAAATGGTTGGCGCCAGGAAGTGGTGAATG 3142985 36 100.0 35 .................................... GAATCCCTACAAAAGTGGATTGAGTTGTAATACTA 3143056 36 100.0 34 .................................... TTGAGCGCGCGCTCGTTGGTTCAGCCAGTTTTTG 3143126 36 100.0 37 .................................... GAAGAAAACAAGCCTAAATATGCATGGGCTTGCGACA 3143199 36 100.0 36 .................................... ACAAATATATAGTGTGGGGTGAGGATGCACGCGCTG 3143271 36 97.2 36 ...................................C ATAAAGATTATGAATATTTAGTTAAAAATACTGAAT 3143343 36 97.2 36 ...................................C AGAACCATTCTTAATACCTCTGTTTGTAAAACCAAG 3143415 36 97.2 0 ...................................C | ========== ====== ====== ====== ==================================== =============================================================================================================================================================== ================== 25 36 99.7 41 ATGTTTTAACCTTAGATACCGTCAGGTGTTGATCAG # Left flank : AACTCTAGCCTGTCAAGCTTTTTATTAAAATTATTCATCGCCTGACGGCATCATAGGTTAGGAGCAAGAAGGGTAATATTAAGCCCATCCGCCCTGTATCACTTGCAGCTTCTACACTTTTTAGACACGAAAGTGATCAACGCCAAACAGTCGCTTTACTCAAAGCTAACGGCATCAGAGTTTTTAAAATACAGAATAATCATAACTTAAAATCGATTTGGTTTTCTCTGCTGAAAACTGCAAGCACCTCTGTTTGTGAAACCCAGTTTAAAAATAAAAGTAGTCGCAAGTCTTACCTAACAGGCGTTTGAACTAGACAAAATTAGTTTGAGGTGCTTGCAAAATACTTGAATTACTTATATTGTATAAGTTGTAGCAATTATAAAAGTCGTGTAAAAGTGCAGTCTCAACCCTTTTTTAGGCTCACGGTTGTGTCTTTGCCAGAGGTGCTTGTAAAATTGCTTAGGGAAGTACTCAGGGCAAGAATTTCCAAGGACAGC # Right flank : CGTTATAAATATTTTAATCTTTAATGAAAGTAGTAGCTGTAATGCTGCTCACTACTGTTTAACAACTATCAATTTGATTTACTACCAACTCCTAACTCTAAAAATTTAGTCTTCAAGTCTTCTTCACTTTCTCCGCAGTAATAATATTTCTGTTCTAGTAAATTGCTTAAGTAATAGCCATGCTTCCAAATAAAAAATATACAAAATTTTTTTGTAGGGTGGGCATCTTGCTTGACCTATGTATTAAATAGATTAATTTTTCTCAATAATTGGGCAAATTGTTTGCTGTGAGTTATCTGTCACCGCTTCCCATCCTGAAAGAAGTTCTTCTAACTCCTGTTTAAACATTAAAAGCTCTTGAATTTGCTTATCAATAGCTATCACCTTATTTTGGAGTCTAGCTTTTATATCATTGCAGGGTAAATTACCTTGGTCATGAACTGCTAAAAAATCCTTAATTTCTGATAAACTTAACCCAAGGCTTTGCGCCCGTTTAATAA # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.47, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGTTTTAACCTTAGATACCGTCAGGTGTTGATCAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.90,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [53.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 6 5562798-5563761 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ==================================================================================================================================================================== ================== 5562798 35 100.0 40 ................................... AAAGTTCTCTTAAAGCTTGCAGTTGGTTTAAGCCGTGATA 5562873 35 100.0 41 ................................... AATGGCAGTATTAGTAGGGTAGAAGTTGTAACCTGTCTGTC 5562949 35 100.0 38 ................................... TGGGGACAAAGAGCCATCACCAACATTAAGTTGGTTGT 5563022 35 100.0 37 ................................... TTAGCTTTTAATTGCATCTTGAAGATAACAGTTTTAT 5563094 35 100.0 38 ................................... TCCAATGTGAATTGTTTTTGGTAAAGTGAATAGTAATT 5563167 35 100.0 36 ................................... TCTGGAGTAGAATCCGAATCACCCATTGTTAATACA 5563238 35 100.0 39 ................................... ACAATAAGGGAAGCAACAATGGAGGTACTGAGAATGCCA 5563312 35 100.0 38 ................................... TACCTGTAAATGTACCATCAGAATGTTTAACTCCACCT 5563385 35 100.0 36 ................................... TAGTTGCCGCTTCCCGGCGCCATCGTTCCATCAGGT 5563456 34 94.3 38 ..........-..........T............. TTGCTTTCCAAATACTTCTCTTATTTCCACATAAATAA 5563528 35 77.1 164 ......GT..A...A......T....AG.T..... AAAACTTGGAAAAACTCTATTCTTTGGCAATACTGCTCGGTTAAGAAAATTTGATAAGACCACAAACCTTGTAGAGACACTAGGAACATCGCGTCCCTATGTGCCAGGTATTAACGCAAAAAATCCTTAACCGAGAAGTATTGTATTCCTTGGGAACTAGCACG 5563727 34 77.1 0 ...A...-..T...A......A....A...C...A | C [5563730] ========== ====== ====== ====== =================================== ==================================================================================================================================================================== ================== 12 35 95.7 50 CTTTGAACTTCTTCGGAAGTTGAACTTATGGAAAC # Left flank : TTCGACCAGGTAAACAACGAATAAATGCAATTGATGAGTTATCACAAAAAGTTAAATATTATGCTTCGGCAAATACACCCGTTAATTTAATGGGTACTATAGTTGATTCAGCTTATGTTGCCGATGCTTGGAATAAATGCTAGAAAGTTTTGTACAATATATAGAAGTCGCTTGTAAAAGGCGCCTGTGTATAAAATGTCGCACATTCCCCATAATCCTTGCAAAAGTTAGTAACACTATACTTTTCTTTACTCATACATCGAGATTTCTTTTCTTATAACTTGTAGAGAATTGTAACTTAAGATACCATTTGTGGGATAAGCAAAATGCTTCAAACCCTGATTCTCTCGTTCTATCCCACAAATCACTCTCTGTATATGACTTTGAGGCGCCTTGAAGTTGAGCTTATTGCCAATAATTATCAACTATTCATGGAAAATTTTGCATCCCACAAAAAAGTACTGTAGAATTATTACAGGGCAAGACTTTCAAAGACTGGC # Right flank : AAAGCACCTAAATTAAAAATAGGTGCCCACACAGTAAATTAATACTTGTGCAATAAGTAGGTAGGCAAAAATAAACCAAACTATGTAAAGATATATAAATACGGAAAATGCATGTACCGAGGTAACAAAAAGTATGGGCGCCCGTTTAAGAGTATTTTTGACTCATGAGCAAGACCAAACCCTATTAAAGATAAGAACGGCAGACGTACCACGCAAGGTCAAAGACCGAGCGGCAATAATTAGGTTGAGCGCACATGGCTGGTATGTGGAGAATATAGCTGCTCACTTTAATTTGACTGTTCAAACTGTAAGAGATGTTCTGCACAAATGGGAAAAACAAGGGTTAGAAGGACTTTGGGAACAACCTGGTAGAGGAAGAAAACCAAAATGGAATGAAGATAACATAGTGTTTTTGGAAAAATGCCTTAGAGAAGAACCGCGTACATACAATAGTCTTCAACTAGCCCAAAAATTAGAACGTGAACATTCAATTAAGCTGA # Questionable array : NO Score: 4.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:-1.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTGAACTTCTTCGGAAGTTGAACTTATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 7 5573647-5574270 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 5573647 35 100.0 39 ................................... AATTTTCCAATTTCAACTACAACCGAAGTTATAGGACAA 5573721 35 100.0 40 ................................... AACTCAGAGATAAGCTGAAGCGAGCAGTCAGGAATAACTA 5573796 35 100.0 39 ................................... TTCTTTCTGTTCCGCATGCCATGGTGGCTTGCGGGAAGG 5573870 35 100.0 40 ................................... TTTTGCATTTGCCCAACTACCACCTGCCTTGCAAGAGCAA 5573945 35 100.0 36 ................................... TGTTGTCTCCAAGGAGTCTAATGGCGGCGCTATCAT 5574016 35 100.0 37 ................................... TAACTGTAGTAATAAGATAAAGCAGGATCATCCCATG 5574088 35 100.0 37 ................................... TCAAGAAGAGATTCATGAACTCAAGAACATCCAATCC 5574160 35 94.3 41 ........................A.........A TCAATATCCGCAGGCTTTGTAGTGTCAACAATGTCAAATTT 5574236 35 68.6 0 A..............T.....T.T...C.TAGCTG | ========== ====== ====== ====== =================================== ========================================= ================== 9 35 95.9 39 CTTTTAACTTCTTAGGAAGTTGAACTAATGGAAAC # Left flank : TTGCAATTGAGTGACACCCAGGTAGATTAATTATGTATCAAAAACGTACTTCACTCGCCGACAATTCTATTCCGGAAAAACACTGATAAAGCATATCACTTTTGTTAAATATATGGAAGTAGTTTATCAGCGGCGCCTTTTTTGGGATACCATGCGCTATCAACAATCGTATTGTACGATTACATTTGAGCCTGTTTAATCAAAGATTAAGTAGTGTTAATAAAGTTAGCAACGTCTGTTTTATCGTTGTACTTCTATATGTATATATATCTAGAATCTAACTTACGAAAAAATGTATTTCACTATACTATTTGTGGGATAGACACAAAGCCTGAAACCCTGATTCTCTCGTCTTATCCCACAAATCGCTATCTATGTATGGGTTTGAGGCGCCTTGCTAGTCATTTTATTGCAAAGAATATCAACTATTTCAACTAAATTCTGCATCCCACAAAAAAGTGCTGTAAACTTATTACAAGGCAAGACTTTCAAAGGCTAGC # Right flank : GACATCTTGCACCTTCTCAATAAAGGTAAGGTGGGCAGTGCCCACCCTACGCTTGGGATAAGCATTACAAGCTTTTTCATTCTCAATAAATTCAAGGTGCAAGATGTGACTTAGGGCGCCATTCAAGTAAAAGATGTTGACAAATTATGTATACGCTATCATGGGTTAATTCGCCTTAGTTTGGCTTTGCCAATACTGGCTATGTTGCGTCGCACGGCAAAAAATATGCGTCCAAACGTTGACAATAAGAAGATAGAACAACTTATGCAAGCTTTGGGTAAAGAAGCGAGGGGTTCAGGGTGTATTTACTTTACTGGTGGCGCCAGTGCCCTACTAATTGGATGGCGCAGTTCTACGGTTGATGTTGATATTCGTTTAGACCCAGAACCTCCAGGTATTTTTGAAGCAATTGCTAAACTTAAGCAAGAATTGAATATCAATATCGAACTGGCTTCTCCCCAGGATTTTTTACCTCCTCTGCCAGGGTGGCGTGATAGAAG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAACTTCTTAGGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0 Confidence: HIGH] # Array family : NA // Array 8 5580207-5579597 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ======================================== ================== 5580206 35 100.0 35 ................................... ATCATGTGATTGTTGCCAGTGACAGATTTTATGGT 5580136 35 100.0 40 ................................... TCTTCGGTTTCTGGCTCGCCTTCCCACCAAATTAAAAGAG 5580061 35 100.0 37 ................................... AAACTGGCTTTTGATAATCTTCTAACGCCTTATTATC 5579989 35 100.0 35 ................................... TATCGGAGTTGGCTCGGGTATGTAATCATCTTCAT 5579919 35 100.0 36 ................................... TCTGCAAGAGCAGAAGAATTAGAAAATAAACCCAAA 5579848 35 100.0 36 ................................... AAATGCCTGGTGTGATGGGTTCTTTACCCGCATCCG 5579777 35 100.0 39 ................................... AGGAAAATGAGAAATATTGTTAATGAGCCAAAGAAAGGG 5579703 35 100.0 37 ................................... ATTTGGATGCGTCCCCAAGAGCATTTATTCACGCTCC 5579631 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ======================================== ================== 9 35 100.0 37 CTTTAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Left flank : ATGGAGGAATTCCGCGCGCAAATAGTAGATTCGTTTGTTGCCTATTTAGTCAACAAGAAAATCCTCGACCCAGAAGACTTTACTCCCCCAGATGAGCGTGGAGGAGTATATCTACAAGCAACTGCGCTGAAAAAATATCTCAAACACTGGGAAGAAAAATTACAAACCGAAACAACACATCCACACACAGGTCATAAAGTAGCATATCGTCGCTGTATAGAATTACAAGTGCGCGAATATATCGCTTGTTTGACAGGTCAAGTTGCAATATATCGTCCAATGACATGGAAACTGTAGCCTAGTATACCATTTGTGGGATAGACACAACGCCTGAAACCTTGATTCTCTCGTTCTATCCCACAAATCACTGTCTGTATATACGTTTGGCGCCTGTCCTTCACGAGTTTATTGCTAAGAATTATCAATTATTTGAGGACAATTTCGCATCCCACAAAAAAGTGCTGTAGAATCATCTCAGGGCAAGACTTTCAAAGCCTAGC # Right flank : TCTACATACCCGAGGGGGTTATAGAGTTCGTTAGTGTTACTTCACCCCTTATTTTGCACAGGGTGGAAGCATTAACTTGCACTACTTATACATAAAAGTTATTATAAATACACAAAGCTGTATTCTCTACGTATTTATATCAAAATAAGCGCTATTTTATAGGATTAATATATAGAAACAAGTTTTTTTTATACATGTTTGTACATCGTTTAGTATATCGTGGCACTGCTATAAGTGGAAGCAGTTCGTGGCAGTAAGTGGCTATACTTTACTTAAGTTTCACAGGTTTCTTTTATAGGTCGAATTTCTGTATAGCTTCTACCCATATTAGGAAAGCTAACTAATTGTTCACAGCGACGATCAAATTGGCGGAAAAATTTTTCTCCAGCTTCAACACTCGTCGCTGTGTAATAATTTGCTATTTCTTTGAGGTCTTGGGTCGCAAGAACGTTAATTAGATATATATTACTCATCCTTGCCTTTCTCTTGCTTATTGAAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 9 5588383-5587760 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 5588382 35 100.0 37 ................................... TTTCGACGGTTCCCATAGAGCCGCCGCTTTCCAAAGC 5588310 35 100.0 36 ................................... ACGCTTTCAGCTTCCTCATCGCGTGAGTCAACTCGG 5588239 35 100.0 35 ................................... AAGTTGTGTTGATGACTTTTTGAGTAGATGCGAAT 5588169 35 100.0 41 ................................... ATTCTGCTTGCTCCAATATCATAATCACGAATCTGACAATG 5588093 35 100.0 39 ................................... CCTCTTCTTTTCCCACTGTGGATATTTGGCTGTATTGAT 5588019 35 100.0 41 ................................... ACAATGCCCGTTGGCTTGTGCTTCCCTTGAGCGAAGAAATC 5587943 35 100.0 36 ................................... CAAATAGTATCACCTACAACACTTGTGCTTTGTGGG 5587872 35 100.0 43 ................................... TTGCGTACCTTTACCAACGGAAGAGAAGATTCCATCAGCTTTG 5587794 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 9 35 100.0 39 CTTTAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Left flank : AAATGCTTGATTTACCAGAATTTGAGGCATCTGTATGGCGCCTGCGGGTAGACAGTTGGCGAATAATATACACTATTGATGAATCAGAGAAACTTGTTAGTGTCTTGGCTATTCGTAAACGTCCACCATACGACTATGGAGATTTGCAGCAGTTGTTAGAAAGTTGAAAATGACAAGAACACTTACTGAAACTAATTGAGTTATTGGCGCCTCGTTAGTAGTAAAATTATATTACACGGATGTTGTTAACGGTCTTTAAGATATTTGTACATTTAGATTTAACTTAGAAAAATGTGACTTAGTATACCATTTGTGGGATAGACACAACGCCTGAAACCTTGATTCTCTCGTTCTATCCCACAAATCACTGTCTGTGTATACGTTTGGCGCCTGTACTTCACAAGTTTATTGCTAAGAATTATCAATTATTTGGTGAAAATTTACTATCCCACAAAAAACTGCTGTATAATAACCACAGGACAAGGTTTTCAAAGCCTACC # Right flank : AGAATAAATTGCAGATCAAAATGTGAGTTGGTTCGATTTCAATACTGCTCGCTTAAGCTCAAAAATTAAAAAAATCGTAGGTTGGGTTGAGGAACGTTCACGTAGCTGACATCTTGCACCTTGGGCTTATTGAGAATTAAATAGCTTGTAATACTTATTCCTGGGTAGGGTGGGCAGTGCCCACCTTACCCTTGTTGAGAAGGTGCAAGATGTGAGGTAGTGTGCCGAAGGCAAGACCCAACAAAAAAACTACAAAAACCAAAACCTACGTAGTATTGAGATGCTTCGTTCCTCAGCATGACAAAAGTTAGGGCAATAAGCAGGCGCCTATATTTGAAATTTAATTTGTAATCCCTTGACAAATCCAAGCACCCCAATAAAATGGGTGTTGAAGTGGTTTATAGTCGTCTGGACTATCAATTATAGTTTCTGGTGATAATTCTGAGATACTTAATAATTCTTTTAATGTTTCTATTCCAGGCGCCGATTTTCGTAGTTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAAACTTCTTTTGAAGTTGAACTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.50,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 10 6355720-6354252 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6355719 37 100.0 37 ..................................... GACGATTGCTGGAATTACAAAGGGACATTAAACAATA 6355645 37 100.0 34 ..................................... ACTTTATTCCACACAAAAGCTACTTGGTTATCAG 6355574 37 100.0 34 ..................................... CAGACCATGCACAACATGTAAGAGAAGTAAGAGA 6355503 37 100.0 35 ..................................... AAGCTACTTCCTGACTGGGTGCTTAGGGAAGTAAT 6355431 37 100.0 34 ..................................... GCTTTCTAACGTATTACGAAACTTCACAAATTGA 6355360 37 100.0 32 ..................................... AAATAAGGCTTCAATCCCGCTTGCTGAGTTGA 6355291 37 100.0 35 ..................................... ATTATTAGGATACTCAACGTATCCTATTTTTTATG 6355219 37 100.0 33 ..................................... AAATAAGAATTTGAATCAGCGCTAACCTTGAAC 6355149 37 100.0 35 ..................................... TTATTATATCTGCTGTAAGACGCCACCACTTTAAA 6355077 37 100.0 34 ..................................... AAAAGATTCAAAGCATTGAAAGGAATCGAACCTT 6355006 37 100.0 33 ..................................... CTTGAACAGTGTAAAAATGCACTTTAACGCCTG 6354936 37 100.0 37 ..................................... TCAAACGCTCTAGCGCGTTTTAGAGGGGTACTTCAGA 6354862 37 100.0 37 ..................................... GAATTGATTCACGTCTATACTTCTTATCACTGCTACC 6354788 37 100.0 34 ..................................... AACAAAAATTTCTTTTTATCTGAAGTTCGATTTA 6354717 37 100.0 38 ..................................... CTATGTATTCCGTTACTTAACTGCTGTAAATCAATCAT 6354642 37 100.0 33 ..................................... CTAAAGGATGTCTGCGTGGAATGAATAAATTGT 6354572 37 100.0 34 ..................................... TAATAAAAATCGACTGTATCAAAAACCATAGAGT 6354501 37 100.0 34 ..................................... TTGATGAAAATAGGAGGATGAAGGGGGCGCCGGA 6354430 37 100.0 34 ..................................... TTTTTTACACTGTTATAAAAATCATGAAACCAAT 6354359 37 100.0 34 ..................................... ATAGTGAACGGCATACTCGTAGAGAACATAATCA 6354288 37 89.2 0 ................................TTCG. | ========== ====== ====== ====== ===================================== ====================================== ================== 21 37 99.5 35 ATTGCAATTTCAAATAATCCCTTTAAGGGATTGAAAC # Left flank : GATTGCATTTTTCCCAGCTTTTTTAACATCCGCACAGAAATTGCGAGTGACTCCCGCAGTAAATTTATCGGTTGTGTAGGGCAAGTAACATATAAAATTATGGGAGAAGTTGAGCCAGAAGTCATCAAGCAAGTAAACGCCATAGCTGATTTTGCCCTATACGCAGGAGTCGGAAGAAAGACACCAATGGGTATGGGAATGGTACGCAGGCAAACTAACTAGGCGCTATTACGCCTACTTTTCCCCACATTACCGCGAACCATAGGGTGTTTTTTTCATGTAACGTCAATTTATGCTCGAAACGCTTATCTTGTATATATTTGAAGAATTTGGCGCCTAATACAGGTTCGCGGTAACTCTAAAACCCTTATCAATTAAGCATTACACCAATTTTAGCTTATGCCAATCTTGACATCTCGGCGCCTGAAACGCTATTCTTGGTCTAGGTTCGCGGTACAGCACCTTGAAAACTAAATACAGCAAAGCTTCCATATCGAGCC # Right flank : CTATACAAATACACCGTAGACAACCAGCACTTAAAAGTAGCACTTTACAATGGCAGTAAATTTATAGGTTGTGTTGGGCAAGTAAGCTATAAAATTATGGGAGAAGTCGAGCCAGAAATCATTAAACAAGTTAACGCCATAGCTGACTTTGCACTATACGCAGGAGTCGGAAGGAAAACACCAATGGGAATGGGAATGGTACGCAGGCAAACCAATTAGACAGCATTTTGGCTAATTTTTCCCATATCACCGCGAACCATAGGGTATTTTTTAGATAGAACGTCAATTTATGCCCGAAACGGTTACTATATAATGATTTCCTGGTTCACAAATTAGTTAACTGTTATGCCCCATCGTATGACTTGCCTGTGATACTAAAATACCGCTCTGTGGCAGAACGGTACTAATGCTGCTTACTCATACTGGTGGTAACTGTTGTTTGTCACCGATAACAATAATAAGAGTACTATTGAATACTTTGGTACTCACTAATTTATTCA # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 11 6361140-6359182 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 6361139 37 100.0 34 ..................................... CTAATGAACGCACTAATGCATTTGGTAATACTAA 6361068 37 100.0 33 ..................................... AAGATATTGATAAATCTGGTACTTATATCTGGA 6360998 37 100.0 34 ..................................... CTGAGAAAGGACTTATCATATCTACCAATCCACA 6360927 37 100.0 35 ..................................... ATTTATCTGCAACCCATAATTACTTGGATTAAAGT 6360855 37 100.0 33 ..................................... AGGTAGATATAGGGATGACTTACTGGAGGTAAA 6360785 37 100.0 35 ..................................... TAAGTTGATTACCTGATTAAAACATTCCATCCTGC 6360713 37 100.0 35 ..................................... AAACATACCCAATCTTTAATTGGATTATTTCTTTG 6360641 37 100.0 34 ..................................... ATCAAATTTTTTAACAGACCGTGTAAACCCTTTT 6360570 37 100.0 34 ..................................... AAACGCGCCGTCTTTTTTGGCGGGAATTCTAAGT 6360499 37 100.0 38 ..................................... TCTCCATTCCTCCTGTAAGTCTCTCTATCCCACTCCCA 6360424 37 100.0 36 ..................................... CTAGAGAATTACACCACTTACCGTACCTATTGCAAA 6360351 37 100.0 34 ..................................... GTGTAACTTTCTATCCATTGATACCAATCGGGAA 6360280 37 100.0 35 ..................................... CATCTCAGACTACAGGAACTTGGGGACATAGAAAA 6360208 37 100.0 32 ..................................... CCTGTTTGATTAAATCTTGCAGGAAAAAAAGC 6360139 37 100.0 34 ..................................... CCAAAACACCTCAAGCTGAATCTTATCAGGATTG 6360068 37 100.0 34 ..................................... CAGTGGATTTAGAACTTGAGAATCAAACACAAGC 6359997 37 100.0 33 ..................................... TTAGTTGATTATTAACAACATTATAAACATCAT 6359927 37 100.0 32 ..................................... AAAGTAACTGAAAACGCTTCAAATTTTCTCAG 6359858 37 100.0 33 ..................................... TCTAAAACTATTTTTAATCGGTCTTGCAGGAAT 6359788 37 100.0 35 ..................................... GTATTTCAGGATTACGTTCGTAGATGTCTTGCAAG 6359716 37 100.0 31 ..................................... ATCAAACTTCTCAGGATAAATTATCTCTAGC 6359648 37 100.0 35 ..................................... TGTACCGAGTTGCCATTGAATAGAATCGATACCCA 6359576 37 100.0 33 ..................................... AGACACAGGGTAGGGGTGTCTTACTGTGTACAA 6359506 37 100.0 36 ..................................... TAACTATAGAAAAGCAAAATCAAACCCTAAGCTAAT 6359433 37 100.0 36 ..................................... ACTATTGTTGCTGTATTTGCTCTTATTGTTACGCAC 6359360 37 100.0 34 ..................................... TCAGTAAGTGTGGATATTCGCGTCTTAAGTAGCA 6359289 37 100.0 34 ..................................... AGATAGTTTGAAGTATTTAAACCAAAAGATTCTA 6359218 37 97.3 0 ...........................A......... | ========== ====== ====== ====== ===================================== ====================================== ================== 28 37 99.9 34 GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Left flank : ATTAACAGAAACCCAGTACGCCAAATTACGCGCGCGTTTGTCTAAACTAATAAAACCAAAAGAAGACAGCATCCGTTTTTACTTCCTTTGTCGTTGCTGCCAAGGTAAAGTAGAACGTATAGGTGGAGAAATGCCAATAGATACAACAGTATTCTTCGCATAAACACTTCTGCCTCTTGTGGAACAGGCATCCTTGCCTGTTCAAAATGTAAGATATATTTTAACCACAAGCTCCATATTTTCACTACAACACCGCGAACCACAGGGTGTTTTTTAAACGCTTCATTAATATAAGGCTGAAACACTTACCCCGTCCAGCATCGAAGCATTTTAACCACAAAGTAGGTTCGCGGTAACTCCAAAACCCTTACCAAATAAGCATTACAGCGATTTTGAAACATGGGCGCCTTGACATCCCAACCTCTAGAAAGCTATTCTTACTCTAGGTTCGCGGAACTGCACCTTGAAAACCAAATACAGCAACGCTTCTACATCGAGCG # Right flank : TTGAAACGCATGAGTGACATTAATATAATATAAGTGTGTTGTTTAAACTTTATTCAAGTAGCCGCTTAATCATTTACTATATCTGGCTCAGGATAAGATTTTATATTCTAGTTCTTATTTGTAAATGCCCTCTTAGTAATAATGCTGCCAGGAATGCTCTTGAACAACTATCAAAACTGCTCGAAGGTATAGAGTCAAAACATCCATACTTATAATATTTAGGATTTAGAAGTTAAATCACGCTTTACAGCTTCGCAAATAATCCTTCGTAAATATTTGACTCGCTCCTCTGGCGCCAATGAGTGCAGCATATCATGAACACTTTGGGGCAACCGTAAACCTGTTACTTGCTTTGCTAAGGGTTCGTTAATCCAATCCTCAATATAGCCTTTGTTTTGTTGCTCGATGAACGCTTGTGTCTGTTTAGGTCTTGGGTTGGGCATAAATTCATAGTAACGTTTGTTCTGTACACATTATAATTCGCCAGAATTTTTCTAGTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAAACTTTATAAAATCCCTTTTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : NA // Array 12 6573118-6573545 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================== ================== 6573118 37 100.0 38 ..................................... GCTGCGCTAATGGCATTCGCACTGCAATTTTCATGCTA 6573193 37 100.0 40 ..................................... CTTTGGAATCGGAATTAGAACTCAAGGTCCAAGGTTAATT 6573270 37 100.0 40 ..................................... GTATCGGTTATGCTGACTTTAGGTTTATGTCTCTAACGTT 6573347 37 100.0 46 ..................................... TACGTCAGACCAATCGCTCCACTGTAAACTGGCAGCGGCAAAAAAA 6573430 37 100.0 42 ..................................... GGCAGCGAGGATCAGCTATCAATTGTTCGTGGTGGAGTTTCT 6573509 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================== ================== 6 37 100.0 41 GTTTCCGTCCCCGTGAGGGGTAAGTAAAGAATGTCAC # Left flank : CGTGAGGGATTATTTAGGGGATAGTTTAGGGGTGGAGTTTTATTATCGTCACGCGCGGAGTTATCAACGCAAAGCAATATTTAGTATAGACGAACCGAGTCCTACCATCCGGGGAACTAATAGACCTATCTCAAGAAATTACACTCCTCACAAAAATGATGCTTGTAGGAATTTAAAGAGAGTTCGTCCATTAACTACTTTGGAGAGAAGTTATATACAAACTTTCCCCCATGAATTTAATTTTGATATTAAGAATCAAACTAAGACCGATTTGGAAGAAGCTATAGGTAACGCTGTACCCGTGAAGCTGGCAAAGTACATTGCTGTTGCTATTAGTAAGTATTTGGGTAGTTAGATGTTTTAGTGGGCGCCTGTCATTGAATGTAAGATTGTTGTGGCATTTTTATAAAGGCTTGTCGAGCGCGTCCCCTGGTCGGGGAATTTGAGTATTTAACCATCAAGTGCGGCACCTACAAAAAGGGAGCTGGCATAGCATGGCT # Right flank : CCCTACCTTTCTAAAACTCTTACTATATTTACTTTTCAAGGTTCAATTGCGCCAAACTACTGAAAAAGCTTGTGTATAAAAACTCTACAACGCTTTGCTTAAGAAGTAAACAGGCGCCGTTCTACGATATCAGACTATTTTCAAGCAATTCACCAAGAAGTAGGTTGGATATAATTATATTATCTGAGATTTTCATCATTATTATCGCAAAAGCTTCCAAATACTCGCTGCGACGATTTTAGTCGTAAAGTTACATATCTTAATAATGGCTACATCATATATATAACAAGACTTTCAAGTATTGAGGGCTAATTAACAGGCGCCTTCATATGAAACAAAACTAAATATAGGCGCCAGATATTGTGACTTAAATAGTACTTAGTACTTATCATCGATTTGATTTACATTAATACATTTTTATGTCAAACGATTTAAATAACAAGCGCTCCGATGATGCTGTCTTAGGGGGTAATAACCCTGCTCCTACAAATGCTGCTGTG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCGTGAGGGGTAAGTAAAGAATGTCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 13 6579362-6578922 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 6579361 37 100.0 42 ..................................... TATTGCTCGGTCAGTTTGGTGCCGTTGCTTGTGGGTCTTACC 6579282 37 100.0 43 ..................................... ACTTACGGAAAACTTCAAATCGGCGCGACTTATGATGGGTTTC 6579202 37 100.0 48 ..................................... CCTGATTCAACGCATCCTCCCGTTGGGATTCATCGTTGATAGCGATGC 6579117 37 100.0 43 ..................................... CCGCATCTATAATAGATGACGGTTGACTTAATTAATTCATAAA 6579037 37 100.0 41 ..................................... TCGTTGTTGTACCCGTATGTGCAGTCACACAGCCCTACGTC 6578959 37 81.1 0 TT.......C.T................A..T...T. | A [6578927] ========== ====== ====== ====== ===================================== ================================================ ================== 6 37 96.9 44 GCTACATGCTACGCAAACCCCGCAAGGGGACGGAAAC # Left flank : ATAATTATAAATAACGTGCAACTAAGCAGTAAACGAGCATTGTTGTTGTTGTTGTTTAATAAAAATATATTGAACGATATAAGAGAAAAAGCCGAAGGAACCCAAGCCAGAAGAGAACCCTTCGTAGGATGTCTATATAAGAAGGGCGCCTGTATGTTTCGTTATGTTTCATACGAAGGCGCCTGTCTATTGACTCCAAATACTTGAAAGTCTTGTTATACATAAAATGTAGCTATTATTAAGATATGTAAAGTTGTTATTAAAATTGTCGCAGCAAGTATTTAGAAGCTTTTGCGAGAATAATAATGATAATCTAAGATAATATAGTTATAATCAACCTACTTCTGAGCGAATTGCTTGTAAATAGGCTGATATCGTAGAACGGCGCCTGTTTACTTCTACAAGATAGTGTAATAAGCTTTTTATACACAGAGTTTTTCAGTAGACTCGCGCAATTGAACCTTGAAAACAAAATATAGTAAGCGTTTCAAAAGTCTAGG # Right flank : CTCAGCTATTTAAAACTGTGTGCCAATAACCTAATACTATTAGTTAATATCTAATAGGTATTTAAGTATGCAATTAGCTATATATTCAGATAGTTTTACTGGAACGGCATTGCCAATAACTTGTTCTAAGTTTGTTTTAGTTTGGTTCTCAATATCAAAATCAAAATTTTTGGGAAACGTTTGTATATAACTCCTCTCCAAGGTACTTAACGCGCGCTTTTTTAGGTTCTTCAAAAAGAAAAAGCAGCAACTATATAGTGCTGCTCTTAAAAATGCGCTTGGCGCCTAAAATTATTAGCTCAGTACATCTATGACAGATGGGAACCAGCGTAATTGTTGAACGGTTTTATTGTTACCAGTTGCCTCTTGAAGGATAACTTGTCCATACTGTTTGCCCTTCTCAGTAGGCAAATAAGAAGGCTGACCATCCTTTTTGGCTGTTGGACTAGGATTTTTAAACTGCAATCCCAAACTGGTAAGCATCTGATTCACTTTCATCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTACATGCTACGCAAACCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.60,-8.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 14 6586860-6587710 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 6586860 36 100.0 37 .................................... AGGCGATATTCCAGGCTCTTCAAGATTGGGAGCTGGA 6586933 36 100.0 39 .................................... AAGCCTAATACCAAACCACCACAGAAACCTGTGGTAGTT 6587008 36 100.0 37 .................................... TCTATGGTCGGCTGCAACGCTCTGGCTTGGAATTTAA 6587081 36 100.0 40 .................................... TACACGTCGATTCCGAAGAACATCACGGAGTACAAGTATG 6587157 36 100.0 39 .................................... GGTGGTGATGCGGCGGCGAATGCTTACAACACTGCAAAG 6587232 36 100.0 38 .................................... TCAAACGTAGAGCGTCAGTGTGACAAACATTGAAGGTT 6587306 36 100.0 33 .................................... ACTATCGCAGTTGCGGGAAACGTAGCCGAGTTT 6587375 36 100.0 43 .................................... CATTTCGCTTTTCTCAGCCACAGCCGCAACTGCGGTTGTAAAA 6587454 36 97.2 38 ..............................A..... TCGCACAGGTCGCTCTGCCTGCGGTCAATATCAGTGAC 6587528 36 100.0 37 .................................... AAAAAATACATATGCCGGAAGTATACAAAATAAGTTT 6587601 36 100.0 38 .................................... CCTTGCCTGACACTTCAAGCTGGTAAAGTGGAAAGTTT 6587675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 12 36 99.8 38 GTTTCCATCCCCTTTGAAACGGGGAATAAGGGAGAG # Left flank : CCCTTAGACTAAGAACAACACTTCAAACAACCTTACTAAGGGTAGTTAAGAACAGGCGCTGTTACAACCACGTGAAATAAAACTAAACAATTACGCGCGCAACAAAAAAGGCACCTGTAGATTTAAGGTGCCGAAGTTTATTGGTGTTAAAAAGATACGAGGTTGATGGTCTCCACACATCGTAAAGAACGCTTGAATTAGTAGCTGTGCTTTATGTTGAGTGGTATGTAGATAAAGTGGCCGAAATTAAGGCATAAAATGACCGCACGACGAAACCCAAGATAGAAGTATGTTTGAGGATATTTATGCGATGGGGCTGCGATAAAGTGCAGAACGTACACAACGGTAAAATAAGCATTACAGCCTTTCTGGGGCGGGCACTTTATCCTTTAAAAACGGCCACTTTATCTTTTAAGTTACATTTACTGCCATCGTCTGGTTCCACATTTACTGCCATCCAGTGGGTAAAGTGACAAAAAATCCTTTCAGATTTTTTGATC # Right flank : GAGGTCACTTCTGGAAGCCTTACGTAGAGGGAGTTATAAACCCCTCAATCGACGCATCTCGAAATTTTGATAGAAAATTTCTAAAAAATCTTCAATTTCGGCGCCTGAAATGTTTACTGTACAAAGCATCGACACACTCCAACGAAATAATAGGGGTTTCAAGCTTTCGGCTTAGTGTGTAGATTCAATACTAAAGCTCCAAAAAGTATATATAAACTATTTAATTTTCAAGGTTCTTGATAAGAGGATACTATCCGTAAATTTATTGTATCGGCGCCATATTATCAAGCAGGTGCCTTCATTTGAAACAAAACGAAACATATCGGCGCCAGATATTATTACTTATTGGTACTGCGAATCTAATCAATTTGATTTATATTGATACACTTTTATGTCAAACAATTTAAATAATCCTAGAGAATACGATGCTGTCGAGCGGTGGTCAGCTAGTCGGCGGTGTCAGGCTCTGAAATTATAGAGGTTAAAATTGTTTCATGCTG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATCCCCTTTGAAACGGGGAATAAGGGAGAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.50,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 15 6589742-6589164 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================ ================== 6589741 37 100.0 41 ..................................... GTTACATTGTTAGCATTGCTGCTGTTCCCTGAACGATCGAT 6589663 37 100.0 44 ..................................... ATCCAGAATCCTCCGAATTCCTCACATATTTGTTGAGGAGATTT 6589582 37 100.0 36 ..................................... GCATAGTTATTTGGTGGTGGGGTAGATATACTCTTG 6589509 37 100.0 38 ..................................... AATTTACGGCAATAGCCTGTATTTACACCACGAAGGAA 6589434 37 100.0 38 ..................................... CGTGGATTTGCTTCAGTCATTGCAAGAGTACTTCTCAA 6589359 37 100.0 43 ..................................... TTTAGAAGAGTATCTCCATCAAATGCTGTATCAGAAATTTTAA 6589279 37 73.0 42 ..C.C..T..TT.C..A..C.G.A............. CCAAGTCCGAAGACACCCATCGCTGGGAAACCAAGCCAGCCC 6589200 37 67.6 0 ..C.C..T..TT.C..A..C.G.A........AG... | ========== ====== ====== ====== ===================================== ============================================ ================== 8 37 92.6 40 GTTAGATACTACAATCCCCGCTACAGGGGACGGAAAC # Left flank : AATGCTTATCCGTGAACGGTTTTAGATTTATAAGTGTAATGGCGCCGGACATTTTACTGTATATCTGGTATATGAACAAAGTGGTATTCTCTGAAACACTTATAACCGTTTATATGACTATGCGATTTTAAGAAAATATTATCTCCATACATTCTGTTTCGTTTTGTTTCATACGAAGGCGCCTGTCTATTGACTCCAAATACTTGAAAGTCTTGTTATACATAAAATGTAGCTATTATTAAGATATGTAAAGTTGTTATTAAAATTGTCGCAGTGAGTATTTAGAAGCTTTTGCGAGAATAATAATGATAATCTAAGATAGTATGGTTATAATCAACCTACTTCTGAGCGAATTGCTTGTAAATAGGCTGATATCGCAGAACGGCGCCTGTTTACTTCTTGAACAAAGTGTTGTAAGTTTTTTATACACAAGCTTTTTCAGTGCAAGAGCGCAATTGAACCTTGAAAAGTGAATATAGTAAGAGTTTCTCTAAGGTAGG # Right flank : GAATTAACTACAGTGTCAAAAACGTTGTTGCAGAAATCTGAGTTACATTATTGACTTCCCCTCACGGGGATTTAAATTAATGTCTTTCATGGAAGCTAAAACAGGCGCCCGCTCTTAACGTTTTGTGTCGATGCATGTGCGCCTGGGTATTGCTTTTAAATCTGTGTACAATAAGAATGATTATTAAGATATCTAAAATTGTCGGAGCAAGTATTTAAGAAGCTCTGGCAAGAATAATAATGAGAATCTAAGATAAAAAACATCCTGTCTAGTACTAATTTTTACAAATGAGAACTTTTTAGGCGCCTTCCCAAAAACCGATATGTACAAAGATTCATTGGAGCGGAAATACAAAAATGTGTCATATGTTATATTTAGTGTCATCAGACCCCCTACCAACCATTTATCAAAACTCAAAATATCCCCAACTTACAGTTAAAGCGGTTCCAGAAGATTACAGAGTTCCAAGCAAAATAAGAGAACTAATTCCGCAAGCAAAA # Questionable array : NO Score: 2.89 # Score Detail : 1:0, 2:0, 3:0, 4:0.63, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAGATACTACAATCCCCGCTACAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [22-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 16 6851970-6851367 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 6851969 37 100.0 34 ..................................... AAAGCTGTTGAGTTTGTTGAAAAGGAGGCGCCTA 6851898 37 94.6 35 .........T....G...................... GTAATTATTCAATCTAGCTTTGGTACTTATGGCAC 6851826 37 97.3 34 ......G.............................. CCCGATGGCGCCCAGATATTGTTTGTTGGAGACA 6851755 37 100.0 31 ..................................... TATTTAGCATACATTTTCTTGCTCTCTGATT 6851687 37 94.6 35 .........T.......A................... CAATCTACCAAAGCTAAACTTAGGCGCCGTGGTTT 6851615 37 89.2 34 ............C...CAA.................. GGATATAATCTTTGATAATCAGCCAGTTGATTTT 6851544 37 97.3 33 .....................G............... ATTATTGAGATTTTGGAGTAAGCGGCAATTTAT 6851474 37 100.0 34 ..................................... GTGGGCGCCTCTAGAGCAATAAATTTGGCTATAA 6851403 37 97.3 0 ....T................................ | ========== ====== ====== ====== ===================================== =================================== ================== 9 37 96.7 34 GTGACAATTCCCTTAATTGGGAATTGAGGATTGAAAC # Left flank : TGTACAAGTTAACTTCGCGCGCAGTTTTGACCCTGTGTTCCCAACTACTGTAACCATTACTCGATGTGCAGCAACTGAAGAACGTGAGGGGAAAGACAATAAAACAATTGGGCGTAAAGAAATAATTCCCTACGGCTTGTATAAATCTTATGTTTTTTACAATCCTCATTTGCGAAGTGAATTTGTTACTCAACGTGACCTAGAATTATTATGGGAGTCGCTAGTAAAAACTTGGGAATTTGACCGTTCTGCATCGCGCGGCTTTATGGCATGTCGGGGATTATATGTATTTACCCATGAAGGTAAGTATGGCAATGCTCCTGTACATGAGTTGTTCGATTTGCTTTCGGTTACTCTTACTGAAGATGTACCACGTAGTTTTAATCACTACAATGTTCAGCTAGATGAAAATAATTTACCCAAGGGAGTGGGCATTACCCGTCTTGCTTGATATTTAATACTCGTTAACCTAACAGCGAGAAGACGTGTATTAAATAAGC # Right flank : GCTGGATAAATAAATACGGATGTTACCACTGCTTGCTCCTTCGACTTCAAGCATAAGCAGTCTGGGTTGAACGCCTCACAGCAAGTAGGAAATTGCCAGGAATTCTGTGTACCACTAGCTTGATAGTGGCTAAATAAATCCTGCCAATTTCCTGCCAATTTAATCTACGTCTAAGGTTATAGACACTCAAACAATTATCGGCGCCGTTTTTAAAGTTCTATTTGAGAAACAAGGAAGAGAAAAAACATGCTGCTAATACCCAATCATAAACAGCACAGAAAGGAGGATACCATTTGGGTACAACAGTTGTGACAATTTTAGGATGATGTAGAAAATCCCAAATACCATGCATTAAAAAACCAACTCCTGTAATAACAGGTGATACTAAATAACCAGCAATTGCTATACAAACAAATAGAGCAGCAATTATTATTTCAAGAGCAGTATTTTTTGGAGAACTATCTAAAAGCCCAAATCCAATATAAATTGTACCAATTGAA # Questionable array : NO Score: 5.69 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACAATTCCCTTAATTGGGAATTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : NA // Array 17 7838551-7837989 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 7838550 37 100.0 38 ..................................... CAGACTGGATTGCAGATATGCTATTCAACAAAGTGATT 7838475 37 100.0 37 ..................................... ACAATGAACCTTGTCTTTTTACTCGAATTGTCTTTTC 7838401 37 100.0 40 ..................................... ATAAATGGACAAACAAATGACTATAAAAACCCAAAAAACA 7838324 37 97.3 36 ....................................G TGAATCTTGTGACTTGCTCAAAGCTCATGCGAGCGT 7838251 37 100.0 39 ..................................... AACCAGAAAGAATAACAGAAGCAGACAAAACCAAAGAAG 7838175 37 100.0 37 ..................................... CTACGATGAAGACTCCACTAATGGATTCTTCTGTTAC 7838101 37 97.3 39 ...............G..................... AAATATCGTAACCAGAAATGCTTTTCAAAAAATCGAACA 7838025 37 81.1 0 ...............G............GGACTT... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 97.0 38 CTTTACCGATTACTTAAAATCGGATTAGTTGGAAACA # Left flank : GAGTCAAATTACAAGAAACCCTAGCCACAGTAACAGGTTTATTGAATGAATCAAATGGCGACACTGCAATTTTACGGCAACATGGAGGAATACAGTACGACAGATATGTTAACAAAGACAATATTGACCATTTTCGCGTAACCCAAGATACGCGCGTCAGCAACACCATCTCTCAGGGAAAACTAATATTACGTCGCTACGGTCTAGAACCAGAAGTCAATAATAACCCTTAAAGTATGTTGACAGCGGAGAACAAAGGCGCATAAGTATTACACCATCTAGCTTTCAGCATTATTAAGGAGATTTTGTAACATGGTCATCTACACACTCCGCCAAATCGCTCAAATGCCTATTTTTTCGTTTGAGTGTGTCGATTGCTTGCTGGGCAAGGGTTTGAAGTATGTGTTTTGTACAATTTTCCACAACATATATAATGTTTTTCAGGAGTGTGTCGATTTGGCGCCTGAAACCCTTACTGGGCAAAGCATCCCAGACGACCT # Right flank : AATAATAAAATATTAACTAATTTCTTGTGGGTGGGCATCCGAGCAAACACCCTTGTAATGGAACGGGCAAGGATGCCGATTCCACAATATGGAGAATTAATTTTTTGTAAGTCCCTTAGTAGCTTCTTCCCATTCCTGATAAGCTTTTGATACTATCATCTTAAACTCCAAATCTTCAAAACCGGATTGTGGTGCTACATCTATACTAATTTGCCAAGTCGATAATAGGCGCAGTGCCTCGTTACGTTGATTATCATTTTTTTCCAAACTCAGAACTTCTTTTACAGCTGTTCCTTGGACTGCACCTCGTCCAAAAAGCCTCAACCACCTTGTTTCTGGGATTTTAGGCAGTTTGTTAACTGATACAAACCTTGTATGATAGCCTTTTGAGGAAAAGTATATGCCGCTAACCTCCTAACTTGCACATTCTAAAATCCTATATATAGCAAGGGTTTCAGAAAGATGTGCAAGTCCTATATTTTACTGGAGCGCGAAGGGCG # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCGATTACTTAAAATCGGATTAGTTGGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.10,-6.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 18 7853793-7853104 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 7853792 36 100.0 38 .................................... GTTTTTTGTGTTACCAAAAACCATCCGAGAGCAATCCC 7853718 36 100.0 37 .................................... CAGATGAAATCTCTTCACCTCTAGGATAGAGGCTGAT 7853645 36 97.2 36 G................................... AATTTTTCTTTAACTGACCGATAACACTCATTAAGC 7853573 36 100.0 42 .................................... TTTTCATGGTACGAGTTCGTAAAATAGAATGATCAAAGAAAA 7853495 36 100.0 37 .................................... ATTACGTATGATGGGCTAGCTTATGCTAGACATTTTA 7853422 36 100.0 34 .................................... GAATCGCTTCAGTAGCTAAAGGTTTAGTTGACTA 7853352 36 100.0 36 .................................... CAACCAGTAAGCATCAGCATTGGCATAAGATTACCT 7853280 36 100.0 34 .................................... CTTAGATTTGCGGGTGGTTTTTTTAAACATGGTG 7853210 36 100.0 36 .................................... CTTAAGCTAGTGACTTAGGAGAAGAAAAACAACCAA 7853138 35 72.2 0 ............AA.CGT...T....T..-.A...T | ========== ====== ====== ====== ==================================== ========================================== ================== 10 36 96.9 37 CCTTACCGATAGGTTTAAATCGGATTAGTTGGAAAC # Left flank : CACTTTAGCGTGTATAGACAAGATATAAGTCTTCGACGGGCGAAGTGATTGGTGATTTGCGAAGATGTAATTTAAAGCATAAAGTGGCACGAACGTTCTTATCATTATTACTGCGTTATGCTTCGCTAGAACTAGTTTGAGGATAAAATGGCAGTCAATGTAAAAAATCACTCATCAAGTGGCAATGTGCGATTTTATTAAATTCCTCAAAAGGCTATCTCAAAAGTATTGAATATTGACAGCAAAGAACCAACGGAACTGCTAAAGTATTACGTAATCTGGGTTTTAGCATTATTAAGGAGATTTTGTAACATGGTCATCTACACACTCCCCCAAATCGCTCAAATGCCTATTCTTTCGTTGGAGTGTGTCGATTGCTTGCTGGGTAAGGGTTTGAAGTATGTGTTTTGTACAATTTTGCACAACATATATAATGTTTTTCAGGAGTGTGTCGATTTGGTGGCTGAAACCCTTACTGGGCAAAGCCTCCTAGACGAAGC # Right flank : CACGATACCAAATTCCCGGCTTTTTTAAAAAGTCGGGAATCTGATTTTTGACAAATGATTTAGAACTGCTACATATATCTGAACAATTATGAGGCGCCCATAATTCTTGGTAGAGATGTGATTAATTCTGTCTCTACCTAATTTTTCAGCATATTTAGTTACTTCAAATGTTTTATTTATGCTAAAAAATTGGTCAGAGCTTTACTTTTAAAGAAAATTAAAATATTTAAGACGGTAAGAAAGCAGAAAACTATGTTTACGTTAAAGACTTATGACATGGGAGATGCTTCGTTCCTCAGCATGACATGGGAGATGCTACCCTGCGGGAAAACTGCGTTAACGTTCGCGACTCATGACAGGAGAGATGAAGTTTCTGATGGAAAGAGCATATTCCACCCATAGGTTTTAATAGTAAATAAGAAAAAGCAAACCCAAAAGAAATGGTGGAAGGATATGAGGAATCTTCATCGAGTCATGGTTATAGCAGATTGTGATAATGC # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTTACCGATAGGTTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.10,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 19 7855120-7854649 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 7855119 36 100.0 37 .................................... ACCCATAACGCCCTCGTCAAAAGCTCCTTTAGAAAAG 7855046 36 100.0 36 .................................... TGCACAGGCAGCCATTGCAGAACAGCTGACTTCAGC 7854974 36 100.0 37 .................................... ATTCTTTGTTCTAAGAAACTGATTGTTTTGGCAGAAC 7854901 36 100.0 35 .................................... CGCCAGCCAAGCTAGAAACAACAACCAAACGAACC 7854830 36 100.0 35 .................................... CATTTCATGCGCCTTTTGCAAAGTGCTGCTCTCAA 7854759 36 100.0 39 .................................... CTTCCGAAAAGGAGGCAAATTACTTCCCTGCATCCAAAC 7854684 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 7 36 100.0 37 CTTTACCAATTTGTTTAAATTGGATTAGTTGGAAAC # Left flank : CTTTTTGAGAAATCTAAAAAACTTGTTAAGCCATCTGAGGACAATGTGCGATTTTATTGGGTTTCCCAGGAGGCTGTTTCCAGAGTCTTGACTATTGGCAGTGAAGAACCTGCGGCGCCGCCAAAGTATTATGTTATCTAGCTTTCAGCATTATTCACTCCTATTTTGTAACATGGTTATACTAAGAACGGTTTAGAAATGTCATTCTGAGCGTAGCGTAATGCGGAGCATTTGCCGCAGGCTAGAATCTCTAAGATGCTTCACTGCACTGCGTTTCGTTCAGCATGACAAAGTTTATATTTAACCCGTTTGCAGTATATCTACACACTCCGCCAAATCGCTCAAATGCTTATTCTTTCATTACAGTGTGTCGATTGCTTACTGGGTAAGGGTTTGAGGTATGTGTTTTGTACAATCTTGCACAACATATATAATGTTTTTCAGGAGTGTGTCGATTTGGCGCCTGAAACCCTTACTGGGTAAAGTCTTCCACACGACCC # Right flank : TTTATATTTAGCGCTTCAACACTCTCTCAACAATAAAGAATCGTTGCTTTAAGGTAATTAAAAATCATTTCTGTTGTAAATTAAAAGGAGTAGTCATAATGTGGATTCAAAAATTAATTATTTGCTTAATTTATGATTTTTTAGATTTTACAGTTGGGCGCGTTTTATTTCCAATTCCATTTATTGGAGAAATTGTAGGATGTATTATATGTATTCAACTGTTTGGTGAAGATGGAGTGCTTTATGGTTTAGAAGCTATTGATGTAACTGAACAAATTGATGGATTTATTCCTACAGCTACCATAATCGCATTAAAAAACAAGCCAAATTAGCTCAATTCATATTTTGCACTTGTACACTTTAGCGTGTATAGACAAGATATAAGTCTTCGACGGGCGAAGTGATTGGTGATTTGCGAAGATGTAATTTAAAGCATAAAGTGGCACGAACGTTCTTATCATTATTACTGCGTTATGCTTCGCTAGAACTAGTTTGAGGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACCAATTTGTTTAAATTGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.40,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 20 8102425-8103551 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================================================================================================================ ================== 8102425 36 100.0 38 .................................... ACCCGGGAAAACCGGCAGGCAAGCGGACAGCTTGTCGC 8102499 36 100.0 39 .................................... ACGTAACTGCATTAAATGTGGTATCGAATTTAACTAAAA 8102574 36 100.0 38 .................................... TTTCGGCACAAAAACCAGAACGAGTCATACCCGATTTT 8102648 36 100.0 34 .................................... TTGACGGAGGTGAGGTTAATCGATATACTAAAAA 8102718 36 100.0 37 .................................... AAGTCGTGCCGACTGGTAACGTATTTATGTACTCATG 8102791 36 100.0 35 .................................... GATGCCACCGGCGCACGCTGACAGTGCTCTGGAAA 8102862 36 100.0 35 .................................... GAAATCTTGCCAATCTGGCAGATATCGCCATTCTT 8102933 36 100.0 39 .................................... ATTCTCGCCGTGCAGAGCGCGTCGCCGCGCCATTGGACA 8103008 36 100.0 35 .................................... AGTACCGCTTGACAAAAATTAAATAACGTGGTATA 8103079 36 100.0 42 .................................... ATGAAGATGATTGAATATCTAAAAAAGAAAGGGTACAGTATT 8103157 36 100.0 37 .................................... AAACGAGCTTTGGGAAGTGTAGCTTTCCTCTGTTTCT 8103230 36 100.0 37 .................................... CAAAGATTAGAGCTAATAGGTACTGGTATAATAGTAC 8103303 36 97.2 176 ...................................G TATTTTTCTAAGTAAATACAAAACACAACATTAAACATAACCCCTATTATTTGGAACATCTCAATTTGGAAGAATCATGTTATGAGTCCAACAGTGAAGTATCTAAAAAGCTTGAAGTTAAAAGAGATTCTTCGCTGCGCTCAGAATGACAATTTACATTTTGCAAAATAGGGATG 8103515 36 69.4 0 C.........T..GAAC...........AAT..T.G | T [8103538] ========== ====== ====== ====== ==================================== ================================================================================================================================================================================ ================== 14 36 97.6 48 GTCCCTATTAATTAGGGAAATTAATTGATTGGAAAC # Left flank : CCGACTCAGCACCCAGCACTCACCACTCACCACTATGTTCCTATACGTCGTCGCATATGACCTTCCCTGCGACAAACGACGCAAAAAAGTCTCAGACCTACTCGAAGGATACGGATGTAGAGTTCAATACTCAGTATTTGAATGCCAGCTAACCCCCGCAAAAATCAAAGAACTGCGTAAACGGCTCAGTAAAGTTATAAAATTAGATGAGGACAGCGTGAGATTCTACCCATTATCTCAGCACACATTAGGGCAAGTCGAAATTATGGGCATTGGCCCTCCAGTTATTTCGCCTCCTACTTCGACGATTATCTAAATAGTGCGAGCGGGTTAGCAATTGCCCCTAAATGCCGACTTTCTCGTTGAAGCCCTCGCCGTCTTGCTGTGTAATGGTTTCAAGGACTTTTATGATGAGTTTTACCCATCTCTCGCGGAAAATTTCAGACCCCCTCGCAAACCGCCTCTGGGCGCCTTACACAGCAAGGGGTTAAAATGGAGGG # Right flank : GATGCAAAATTCTGTTTGTAAGTCAGTTGGCAATGTTGGGTTTCAAGGCGCCTAACTGACTTTCTTGCTAGGCGCCATCTCAACAATCACTGGTTTAGGTAGCTCGTGTACTTGAGTCGCAGGTTATTGATTTGGGTGTGGTTGGGAGGGTAAAACCAGCCTATTACATTCTCTATTACTGATTGTCAATAGAAAAGAAAATATTCTCTTTCTAAAAGAGCTGGCTTTCTTAAACCCATACCATAAGGTAAATCCAACAATTTAACACTCACAACCAAATATCAGCAAATACTGGCGCCTTCTAGAAAATATTTGCTACACTGCATTGCAGTCACGAAGTAAGGAATATAACTCGTGTCGCGAGTATTTTGGCAATCGAAAATCTGGGGCATCCTCCATGACCCAGCCTTAAAGGCATTACATAATAATACTGGTCGCGGTGGTAACAGTTTTTGGCAACAGTTATCAGTGATGCAAGACTGGCGGGATAATCAATGGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCTATTAATTAGGGAAATTAATTGATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.50,-1.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 21 8863026-8862633 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP025018.1 Calothrix sp. PCC 7716 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 8863025 37 100.0 33 ..................................... ATCGTGATATTTTTGGTGCGGGTGATTTTGTTG 8862955 37 100.0 37 ..................................... TTCTCGTGCGCGCGCGTATAGCACAAGACACAAGAAA 8862881 37 100.0 33 ..................................... AGGCAAACCAAGACATGTTGTCCTTGGGCAATC 8862811 37 100.0 33 ..................................... GTAGAATTTAAAGCTCAACATTTATGCCATTCT 8862741 37 100.0 35 ..................................... ATGTGTTTATGGGAATAGCGGATGGCGCCGATGTC 8862669 37 97.3 0 ..........................A.......... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.5 34 ATTGCAATATTAAATAATCCCTTTAAGGGATTGAAAC # Left flank : TTGACATCGAGTTTTTGCGAATTGTAAAGGAAAATATAACAAAACCTTACTTTTATGGAATAGCTTTTGCTGTTTCCCAAAATATTTGGAAGACTACAGCAACGTTAAAAGCGTTACGTATTCCACATACGGCGCCAATTCATACAACAATTACACGCGATGGTCAACAATGGGGCTGGAGTACAATACTTTTAGATGGTTTTTTAGATAATCCAATTCCGGCGCCTTATTCTTTAGGTATACTCTCAGGTGCCGCGAACCATAGGGTGTTTTTTTGGCATAGTCCAAATTTATTGTGTAAACGCTTGTCCAGTATAGCTTTGAAGCATTCTATCTATTTTTGAGGTTGGCGGTAACTCTGAAACCCTTACCATACAACCGTTTTAGCTATTTTGAACGGCACCTATCTTGACACATTAGCCTCTGAAACGTTATTGTTACTCTAGGTTCGCGGAACAGCACCTTGAAAACTAAATACAATGAAGCTTCTACGCCAAGCC # Right flank : ATAAGGATAAAGATAGAACAGATTGCGTGATTATGAAATACGTGTAGAGACGTTACATGTAACGTCTCTACATGATTTGGAGTATTATGTATGTACTTCTGAAAATGAAATTTGCTGCGAGACAAGGCGCCACTGTTATTTATTATGTAAGATAAAGAAGAAAATTAATATTAGTATAGTTATGATTGTTACAACAGGGAACGATGTTGCAGGACGTGCAATCAAAAATTACGTTGGTATAGTACGAGGTATTATTGTACGCTCACCAACGATTGGGCAAGGAATAATGGGTGGGTTGAAGCAATTAGTTGGTGGAAACATTGAAGCATATGCAGTAGCTTGTGAACAAGCACGGCAAGAAGCATATGACCGTATGATAAAACAAGCACAAAGTTTAGGTGCCGATGCTGTAATTTGTATGCGTTATGATGCCACAGAATTTGCTGAGGGAGTGACAGAAGTACTAGCTTATGGTACAGCAGTAAAACTTGAATAAGGTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATATTAAATAATCCCTTTAAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA //