Array 1 162393-160733 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCC01000125.1 Salmonella enterica strain Sal25 contig_139, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 162392 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 162331 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 162269 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 162208 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 162147 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 162086 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 162025 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 161964 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 161903 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 161842 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161781 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 161720 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 161659 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 161598 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 161537 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 161476 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 161414 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 161311 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 161250 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 161189 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 161128 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 161067 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 161006 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 160945 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 160884 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 160823 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 160762 29 96.6 0 A............................ | A [160735] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ATGCGAGATT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 35741-36684 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFCC01000123.1 Salmonella enterica strain Sal25 contig_137, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 35741 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 35802 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 35863 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 35924 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 35985 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 36046 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 36107 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 36168 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 36229 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 36290 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 36351 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 36412 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 36473 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 36534 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 36595 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 36656 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 16 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTGAGTTCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //