Array 1 19741-20439 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCN01000014.1 Lactobacillus acidophilus strain LA_AVK2 NODE_40_length_20494_cov_54.7763_ID_79, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19741 28 100.0 33 ............................ TAAGAGAAAACGGTGGTTTCCTCTTATTTTTAT 19802 28 100.0 33 ............................ TAAATCCGGACAACGCTTGCCACCTACGTATTA 19863 28 100.0 33 ............................ TCATTGAGACACACATTGCGACGACTAAACTCT 19924 28 100.0 33 ............................ TTTTAATGAAAGGTGCTAGTTTTGTGACACTTT 19985 28 100.0 33 ............................ TGATTTTCCAGATTCGGCTACTATTTTGGCAGA 20046 28 100.0 33 ............................ CTTAGGCTATTCCGCACACAATATGTGGCGTGG 20107 28 96.4 33 ...............A............ TGACTGCAATGCAAGCAAGAGCGGACATAGCAA 20168 28 100.0 33 ............................ CGTCATAAATTAGCTTTCTGCCCTTTTGCGTCC 20229 28 100.0 33 ............................ TGCTGCTACGAGCGCTTTTGGTCACATTAAAGA 20290 28 100.0 33 ............................ TCATTGATGCACCGGTACTTAACTCAAATCAAA 20351 28 100.0 33 ............................ TGACTACGATATTTTCTTTTAATTATATCTTGG 20412 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 12 28 99.7 33 GTTTTCTCCACGTATGTGGAGGTGATCC # Left flank : GCGTGGTTGTCTGCAGCAAAGGCTATCCAACGCACCCAGCACCTAATGTTAAGATCGGCAAGCTGCCTGAAGGTGCTAATACCTATATCGATTACGCCAATGTTAAAGGTGATTTGGAAAACTTGACGGGTGATGGTGGCCGCTTGTTCATGGTGATTTCGGAAGCTGACAATTTAGTTCAGGCACAAGACAATGTTTATTCTTATTTAAGTAAGCTTGATCTGCTGGATTGCTTCTACCGGCATGATATTGGTAATCGTGCTTTGGGAGATTTTAATATTATATAATGTCTTAACTTAATGACATTGATAAGGCTACCCATATTTTGTTTATTTGTAATCCTGTGAATATAATAGCAATTTAAAATTATTATATGAGCTAGATATATGTAGAAGAATATTTGATATAATTGTGTCGATGATTTGGTTGGGGAAATGCAAACTAAAGAAATTTTGCTTTTTAGTAAATTTAAAATAGCTTAACGATGGGATTCCTTTAGT # Right flank : CAATATCATCAGCATTTTTCACACCAGAAAATAATTTTCTCCACGTATGTGGAGG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 28-544 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPCN01000008.1 Lactobacillus acidophilus strain LA_AVK2 NODE_17_length_65111_cov_47.839_ID_33, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 28 28 100.0 33 ............................ TATATACATAGTTGTTTGTTTCAAAAATTGCCG 89 28 100.0 33 ............................ CGGAATGTATGATAAAAATTGGCTATTTGCCTA 150 28 100.0 33 ............................ TATTGATGCAACACCTAGCGCAAGTCAACCTGG 211 28 100.0 33 ............................ CAGGGTGGTTTTAAGTACGAGATTGACTACGAT 272 28 100.0 33 ............................ TGGCGAGAAGCTTATGAAGATCCTAGGAAAAGG 333 28 100.0 33 ............................ TATATGCGACTTATTTCTTACGATGAGATTCCA 394 28 92.9 33 ............A.A............. TCGATGGTAACTCTGTAGCTTTTAGAGCCTTTT 455 28 75.0 33 .....T..T.T.A.A........A.C.. TGAAGCACAATATTTTTAAAATAATTGGGCAAG 516 28 71.4 0 ..........AAA.A......C.C..TA | A [539] ========== ====== ====== ====== ============================ ================================= ================== 9 28 93.3 33 ATTTTCTCCACGTATGTGGAGGTGATCC # Left flank : CCGAGGGTGGCAATATCTTCCTTATTTA # Right flank : AACGCAGTGAAGGAAAGATCACAAGAAAAAGTCCCTAATCAGGGCTTTTTTCTTTTCCAAAAACAACATGCTGAAATAGTGTACCGTAAACTGGTAAAATAGATAAGTAAACATAGATCAATTAATAAATAAGGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATAGATGGAAATTCAGTTGCTTTTCGTGCCTTTTATGCTTTGTATCGGCAACTTGATCGCTTTACTAGTCCAGATGGGTTGCACACTAATGCGATTTTTACCTTTAAAAACATGTTGGATGCCATTCTTAAACAAGTAGATCCAACTAATATCTTAGTTGCTTTTGATGCGGGCAAAGTTACTTTCAGAACTGCCATGTATAAAGACTACAAGGGCGGCAGACAGAAGACACCTAGTGAATTGCTTGAACAAATGCCTGTTATTCGTGAAATGTTAACGGATTTAGGGATTACAAGCTATGAACTGAAGAATTATGAAGCCGACGATATTATT # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTTCTCCACGTATGTGGAGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA //