Array 1 547670-549514 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072028.1 Akkermansia muciniphila strain Akk1756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 547670 31 100.0 34 ............................... TTCATACAGGGGCAATCCGTATGCTTGGCAGAAG 547735 31 100.0 34 ............................... GTAGGGTAGCGTATCTTTTCAGGGGGCTGGGTAT 547800 31 100.0 34 ............................... AATATCCCTGATGCTGAATAACTACGCCGCCCTA 547865 31 100.0 34 ............................... CTTATTAGGTGTGAGGAATCGGAAGCGCATATAG 547930 31 100.0 34 ............................... GATAGGAGAAAAGTCGGTTGCCCTGCCATGACAT 547995 31 100.0 34 ............................... ACGCAGGGGCAGGGAGGACCGAAAGCAGGGGTGG 548060 31 100.0 34 ............................... CGCTTAGAACCCAAACAACTTACAGTCCAAACAG 548125 31 100.0 34 ............................... CCCATGACCGCAGTCACCGCAAGGCCTCCAGCAA 548190 31 100.0 33 ............................... TACTAGCAAATCCGTAGAGAGTGCGAAAAGCCA 548254 31 100.0 34 ............................... CAGTTGCCAAGGTCTGCCCATGCATGGTTCTAAT 548319 31 100.0 33 ............................... ATCTTTTGAAGAGACAATCATGACGGCATACGC 548383 31 100.0 34 ............................... TTGCGGAATGAGGCGGGCAGGCCGGTTGCATATT 548448 31 100.0 34 ............................... AAGGTAAAGGAAGATGCCATCACGAGAGATTACA 548513 31 100.0 34 ............................... TGTACACCCGTCAGGGCTTTAAGGTCTTGCTTCA 548578 31 100.0 33 ............................... CGGTTGCCCTTGCTAGTGCGGCAATTAAGTCTA 548642 31 100.0 34 ............................... CGTAATATTGTACGGCTCTTTCCCGGAATACCCG 548707 31 100.0 34 ............................... CGGTGCAAGGCTTTCATCTTCCCCACACAGTAGA 548772 31 100.0 34 ............................... TTGCGAAATGAGGCGGGCCGTCCGGTTGCTTACA 548837 31 100.0 34 ............................... ATGAGTCCACACCATAATGGTGCACAAAATGAAA 548902 31 100.0 33 ............................... TCTTTCATAGTATTATTCTTTCTACTGATTTGT 548966 31 100.0 34 ............................... TTTCTACTGATTTGTTGGTTGGTTTTACTTTAGC 549031 31 100.0 34 ............................... TTGGCATGGTCATCGTAAATGCTCATTGTTTTAT 549096 31 100.0 34 ............................... TGATTCCACATTTTTTGAGGAATCTCTTGGCATG 549161 31 100.0 33 ............................... CACCTCCCATTTCAATCCCTATCGGAATAGTGG 549225 31 100.0 34 ............................... CACTTGCTCAACTCGGATAGGTCATCAACGCAAT 549290 31 100.0 33 ............................... TCATCCCCGTAGTTGATGCCGGGGATGTGGCGG 549354 31 100.0 34 ............................... TTCAATCACGTCCCCCACCGCCCGAAGATAATAA 549419 31 100.0 34 ............................... CAACAAACCGATACGTCCCCCAAGTTGTTTCTTA 549484 31 90.3 0 .........T...................GT | ========== ====== ====== ====== =============================== ================================== ================== 29 31 99.7 34 GTCGCACCCACACGGGTGCGTGAATTGAAAC # Left flank : ACTGCCCTGTAAGAGCGAGGCAAGCTTCTTCTATTGAGCCTTAAACAGGAGCCGTCCGTAAGGGCGGCTCCTGTTGCATGGCGGCGCAAGTGGAATGCAGGTCAGTTGACTGCCATTAGGGTGGCAGCAAGGCATGTATATAGATCCGGATATTCCTGTTTTCCGGTAGGTGAATTCCTGGTTTTGTGAAGGAATGAGGAAGATGTTTCTGGACGCAGTAAAAAAGAACGGTTAGCATCAATGAGCCAAATTGAGTGCAAGCTGGCTCGGACGTGAAGTAACTGAGGTTTTCTAAGATGATGCCACATCGGATGCTGCGCTTGCGCCAACCTCAAGCTCACAGAAAATTTCCGGGAATCCGGCGCATGCTGTAAGCGATTGAGAAATGTAGCTTGACAGAAAAATTCCCTTTGATCAGGCCTGACCGCATCTGGTTCTTGCATCAGGTTGGCGCAAGACCTTTGTTGCATGTTTGATACTCAAACCGTATTCGTCAGGCC # Right flank : TTTTTATGTATGTTTGACATATTTAAATACGAATCGTTGTTTTATTAAGGGAGGGAGATATATTGAAATAAGGGTATTTGTTGCTGAAGAATGAAAGATGGATTTTTGTGTTTTTTGTTGAATGCAATATTTTGACGGAGGAAGTTGGTTTTTGGCTGATAGAGGAGAAATGACGGGAAGTATTATTGGACGAATATGAAAAGATATTGTCTGGTTTCCGGGTTATGTTTGTGCCTGTTCATGGGGATATTTTCATGTATTCCGGAAGCTCCGGAGCATAAGACGGAAAAAGATGCCTCAGCCATTGTTCTGGATGAGGATTCGGATATAATCTGGAGGAATTTTTCTTTGGGCTGCGTTTCATTCGATGATAAGGCTCCGCATAGTAAAGGTTCCCGCATTTTTCACCGATTGATTCCAGATACGGAGGTTTATATCCGTCAGTTGTCCCGTATTGTTCTCCATACGTTGTATGAGAGTCCTGAAGAATGTATTGTTCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCACACGGGTGCGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 992517-993608 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072028.1 Akkermansia muciniphila strain Akk1756 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 992517 36 100.0 30 .................................... TGATCACATCCCGGTCGGAATCGTACATCA 992583 36 100.0 30 .................................... GCTTCCATTTGAGCAATGACTTCCGGGTTT 992649 36 100.0 30 .................................... CCGGATAGACTATCGGTATCATCAGCAATG 992715 36 100.0 30 .................................... TTCCCTATATTTGGGGACGGTTAAGGTTGA 992781 36 100.0 30 .................................... GGGGATTGAAAGGAGGCCCTCGCGTCCATT 992847 36 100.0 30 .................................... CCACGCTAGCCCCCATCTGTTGAAGCATGG 992913 36 100.0 30 .................................... GCAGCCGGGCAAGAGGTTCCGCGACGCATA 992979 36 100.0 30 .................................... ATGACGTTTTCGGCTCTATCCACTATCATA 993045 36 100.0 30 .................................... TTGGGGAGTGGAGATTAGCAAGGAGGTCCG 993111 36 100.0 30 .................................... AAGGCAGATGCAGCTGGTCGCGCACAATCT 993177 36 100.0 30 .................................... ACGATTCACAGGCCCCAGAATCATGGGACT 993243 36 100.0 30 .................................... GAAATAAGACAATGAGTATTTACGAGGATC 993309 36 100.0 30 .................................... CATGCGAGGGTGATTTTGCGAAAAAGATAA 993375 36 100.0 30 .................................... CGCGCTGAACGCCTTTATCCGCGTGCTCAA 993441 36 100.0 30 .................................... AACAGGAACGGTGCATTGTGTGGCACCCTA 993507 36 100.0 30 .................................... TATGATATCCTATAGCAAGTACACGGGCGC 993573 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 17 36 100.0 30 GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Left flank : CTGACCTGGAAGAACATCAACCTGAAATCCGGCCTGGTTTCACTGGCGCCCTGCCATACCAAAACAGGCGGGAGCCGCCACGTTTCCATCCTTCCCGTGCTGGGCGCCATCCTCAGCCGGACGTCTTCCGCCGGTTCCCCCTCCCGTCCCGTTTGCCCGCCCAACTGGGAAAAGAAATGGATGGAAGTAAGGCGCCGGTCCGGCATCCTGAAAAAAAGCGGATGGGTGCAGGACGTGCTGAGGCATACCTACGCCTCCTACCACCTGGCCCATTTCTGCAATCAAAACCTTCTTCAGAAGGAGATGGGGCACTCCTCCCCCTCCCTGCTTTTGGCCCGTTATCTTAACATGGACGGAATCACCTCCGCAACCGGCGCCATGTTCTGGACGCACAGCTTCATTCCTCCCGCTCCGTTAAAGAAAAACTGACAAAAATCCGTCTGGAATTGCGCGGCCAAAGGCGGAGCAATCCCCTGCTCCATCAGACCGGAGGCGCATTT # Right flank : TAGATACTGTGCCTTATTTTTATGTTCAGCGACTTATAAAAAAATACGGCATCCGATATTTTTACCAGAGGAGCATCTGCTGAGGCAGGGAAACCTCCTGTCGGGGACAAGACCTGCCATGAAAAACGAACATCTTATCCCACTGGATATTCGTAACGAAAAGACAGCGGACAGAACCATCAGGCGGTATCATTTTCTGGATTCTGCGGGAGTGGGTAGCCATTCTTTCCTGAGTAACGCACGCGCGGGCATAGACGCTATACTGAATCATCGTATAGCCGTCTTCTAAAAGAGCCTTACGGAAATATTGATAGTTTTTTTTATCTTCCGGCGTGGTTGTGGGAAGATCAAAGAACACAACTAGCCAGCCCATTTTATAGTTGTCATAAGCCATGGTTCATACGGTCCGGATTGTCCGGCAAGAACTGCTTTGCGGAAACTGCGGCAAACGGCCTCTACCGCCGCTTTCAACGGCAGCTGTTTATCCCGGTACATGACAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.50,-4.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 3 1062503-1061524 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072028.1 Akkermansia muciniphila strain Akk1756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 1062502 33 100.0 34 ................................. CTTCCGGGTCGTGGAACTGGTTTCATGCTCCTTA 1062435 33 100.0 37 ................................. ACCGCCCAGAGGATGGATTCTTTTTCATCGGCTTTCA 1062365 33 100.0 34 ................................. TCCGGAGCCTCTTCAAAAAGAAACCGGTTATGGT 1062298 33 100.0 35 ................................. AATAAACGCCCAATCCCCGGAACGAAGCATGGAAA 1062230 33 100.0 34 ................................. GTATTGTTCTTTTTGTTCCTGCATTATCCTCCGA 1062163 33 100.0 34 ................................. TGATTCATGGTTTAGCGATTGTTGATTAAGTCGT 1062096 33 100.0 34 ................................. CGACTCGTCCCGGTCCACATCCTCCACGCCGCAC 1062029 33 100.0 34 ................................. ATTTCGGAGGACATCGCGCTGTTCGATATAGCGA 1061962 33 100.0 34 ................................. CGTTTCGCCGGTGGGGTAAATGACCGTGGTATAG 1061895 33 100.0 34 ................................. CGCTCCCCCTGCGGAACAGCAGCAAGAAGTTACT 1061828 33 100.0 33 ................................. CGTTGGCGTATACCCCCTGCTAAGGAGCCACTG 1061762 33 100.0 38 ................................. TTCTTCTTCTTCTTCATCACTGGAAGATTCAATATTCA 1061691 33 100.0 35 ................................. TGCTGGATACGCTGGAATACGATGCGCAATCCCCT 1061623 33 100.0 34 ................................. CAGCAACGCGTCCATGTTATTTCCCCTCCCGTTT 1061556 33 97.0 0 ................................A | ========== ====== ====== ====== ================================= ====================================== ================== 15 33 99.8 35 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : TTGAGAGGCTGGATAGCCAGACGTCTTTATCGGGAGATGGATTGGAGTCTCCTGGATGACCGCGCCCCGGAAGATTGGACGATTGGACGGGAGGTATTGGCCAGGGTTCCGGCAGCATTGTGCCGCATTGATGAGCCATGGCGTAAACGTTCCCCGTGGAGTATATGGACGGCCTGGTGCTGGCCCAGCCGCACGGTAAGCGCCGAGAGTTACGCGGCCAGGTTTGCCGTGGTGATTACCGGCAGCCCCCGCATGTCCAACCAACCCGCCAGCGAACGGGCCAGAGTGATGCACCTGCTGGCCGACGCCAGGGAGAGGATGCTCCGGGAGGGAGTGGCCAGGGAGGACGACGAGGCAGTGGACTGGGGAGACCTGCTGGCCGCTTGTAAGGGGGAGGCAGAGTCGATGCAGACCCCCTGCACGGAGCAGTCAATTTGACAAGTTATATAAGATACTTGTCGTAGTTCTATCAGATGTCTTGGCGCGTTACAGGGCAGTCC # Right flank : AGAAAAAGCTCTCCGAGCTTGTTTGGTCTAGAGAGCTTTTTTGTTCCATCATCTTGTTAAGTTGTCAGGAAGAGGGGTGATTATTGAGATTGAGTTCTGCCGGGGGGAGGGACTGGAGCAGAGCCAGGATGGGGTCCTGTGGTGCAGCGCCCATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGCAGGGCTGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCCCCGTCCTCGTCCCGGAAAACGCGGGCCAACCAGCGGCGTTTTTCTTCCGTACTGAGCAGGGGATTTTTCATGTGCCGGGGAATGTATTTTTGTCCAGCAGGTTTCCGGCAAGCTGTTCTCCATCCGCAGTGGGCCGGTAAACATAAGGGCGACCGTCTCCAATACGGTTGACATATCCCTGCGCAATGAGATCCTGCAGGATATTGGTGACGGTATTAGGGTGCAGGCGTGTGGCTTCCGTAATGGTGC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1097699-1095728 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP072028.1 Akkermansia muciniphila strain Akk1756 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 1097698 31 100.0 34 ............................... TTTCTCTTGGTTGTTGCGGGGATTTTAGATGTAC 1097633 31 100.0 34 ............................... TGATATGAAGTTCTGGTATTTCTTTCATGGCGTG 1097568 31 100.0 34 ............................... CGAAACGGTATTTGACGCCCGCCCTGTTGCGGCA 1097503 31 100.0 34 ............................... ATCCGGGTGGTAGTCCGCAATGCCGATTGTCCGC 1097438 31 100.0 35 ............................... ACGGAATATCCGGGTAGAGTTGCCCCTCACAAAAG 1097372 31 100.0 34 ............................... AGGAGAACAGACCTGCAACGGATGTAGGAATGTC 1097307 31 100.0 34 ............................... TTTTAGTTTTAGTGTTTCTTTTAGTGTTCCGGGG 1097242 31 100.0 34 ............................... TTTTAGTTTTAGTGTTTCTTTTAGTGTTCCGGGG 1097177 31 100.0 34 ............................... TCTATTGTTCAGTGTTGCTTTCGTAGGGTAGCGT 1097112 31 100.0 33 ............................... AATCCGCACATCCACAGGAGGCATGCACCAGGC 1097048 31 100.0 34 ............................... AGGAGAACAGACCTGCAACGGATGTAGGAATGTC 1096983 31 100.0 34 ............................... TTTTAGTTTTAGTGTTTCTTTTAGTGTTCCGGGG 1096918 31 100.0 34 ............................... TTTTAGTTTTAGTGTTTCTTTTAGTGTTCCGGGG 1096853 31 100.0 34 ............................... TCTATTGTTCAGTGTTGCTTTCGTAGGGTAGCGT 1096788 31 100.0 33 ............................... AATCCGCACATCCACAGGAGGCATGCACCAGGC 1096724 31 100.0 29 ............................... ATACGTTGCCATAATCAATAAAATGTGTT 1096664 31 100.0 33 ............................... TTTTCGCCGCAGGTTTAACGCCGTCAAAAATAT 1096600 31 100.0 34 ............................... CTGCCGGATGTAGCCAAGCCAGGACGCCGTGGGG 1096535 31 100.0 34 ............................... TTGCACGGAATGCGGTCCGCAGAAAATGGAAGAA 1096470 31 100.0 34 ............................... TTGGTCTTTCTGTTGGTTAGGGTTAATAGTTAGG 1096405 31 100.0 34 ............................... CACACCTACCTGTACCTTGTAATCCTTGTCTGCC 1096340 31 100.0 33 ............................... TTTTCGCCGCAGGTTTAACGCCGTCAAAAATAT 1096276 31 100.0 34 ............................... TTGGTCTTTCTGTTGGTTAGGGTTAATAGTTAGG 1096211 31 100.0 34 ............................... CACACCTACCTGTACCTTGTAATCCTTGTCTGCC 1096146 31 100.0 34 ............................... GCGGAGCACCCCGGCATACATGTCGCAGCCAAGC 1096081 31 100.0 34 ............................... GGTGAAAGGGCATAATATCTATAACTGCATGAAG 1096016 31 100.0 34 ............................... ACCATGCAGGGGAGGAAGAAACGTTCCGCCAGCT 1095951 31 100.0 33 ............................... AGTTGTATGACAAAAGGCATATCTTGTTTATTA 1095887 31 100.0 34 ............................... TATTTGTTTAGGTTATGCGGGGGATTGTTCCCCC 1095822 31 100.0 33 ............................... CGGCTGGTCATCTACAGGGCAAACCGGGAAATA 1095758 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== =================================== ================== 31 31 100.0 34 GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Left flank : GCCGTAAAAATTCCGTTGATGGCCTGTCTGGCCTCCGCTGTCTCCGCGGCGTTGGTATGGCTGTTGAGCCTGAACAGGTGGACGCGCAAAAGCATCATGTAAACCGCAGATATTTTTCGCAGGTCGCTTCGGGGACACGGCAGTACCGGGATGTCTCTTCTTTTGTGGAAAAGAGAATGAAACGGTTTCCGGGGAGAGGCCTGCAAAATTCTGGACGGGAAAGAGGGAACAGGCTAGGATGTCCCAGCATCGTGTACAGGCCTAGGTTGCCGGAGATGCGGGCTTTTTAACGCATGAAAAGCTCCTTTCCCGGTCTCCCTTCCGCCGACCCCAAGCTCACAGAAAATTCCCGGGACACCGGCGATTTTCGTAATCCGTTGGGGTTCTAATCTTGACAACTATCATCTCTTTTTCACGGCCTGGAATCTTTGTACCTCCCATGGGAGGTTGGCGCAAAACACCCGTTGCACTGTTGATAATCAAACCATAGACGTTCAGGA # Right flank : TGGAAGACGAGGCCGGCCGCCCGGTAGTGAGGAATGACAGGATAGTTGATATAAGTTGAATCAGGGTTGAAATCCGTTGGAACCCTAGAAAACACGGGAGTTAAGGAGGATCAGGCCAGTCATGAGCTATCTTATAAAAGTCGGAGCTGAAAAGAGGGTAAATGACAAGTATCTGATATAAGTACACAAGCTATGCAGGGATGCTGCACAAGAGCTGCAAAGAGTAGGTGATAGAGCAACGACAAGGTAAAAAATCATGATAGGATGCCCCGCATGTGTACACCTACATATTGTATCCCCTTGTACGGCTCCGTTACCGTTATATCCCCAGCAGACCGGAAGAAAAAGAACCCACAAATTTATCACCTTCATGATACCGCTGTCGTGTTGATGTGGACAACTCGTGAGGGAAGTAAAACGACGTGCTGGGTGCGGGATATGCTCGACAACGTGTGGATTGTGATCAGGGATGAGAGAGAAGATGATTGAAAACAAAAAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTCACGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTCACGGGTGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [48.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //