Array 1 226835-224983 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKPP010000006.1 [Clostridium] symbiosum isolate MGYG-HGUT-01367, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 226834 33 100.0 36 ................................. TATGACACAACTGTTCTGGAATACAATCCAATTTAC 226765 33 100.0 35 ................................. TGGTGTCATTGATATATTTCCCACCCGGAGTGAAT 226697 33 100.0 35 ................................. CTGACCCGCCAGACCCTCCTGACCCGCCAGACCCT 226629 33 100.0 35 ................................. GTAGGAATCTTAATCGGATATGCACTTGGGAGGAC 226561 33 100.0 34 ................................. AACAGAATTTATGACAGCGAAGCGGCATTAGCAG 226494 33 100.0 34 ................................. TCGGACGCCTCCCGGAGAAATCCTGTAAATATAA 226427 33 100.0 35 ................................. CGCCGTTAATCATAGCTGGTGGCATGTTAAACAGT 226359 33 100.0 35 ................................. TGTTATGTCCTTGCAGGTGTTTGAAACGGTCTTTG 226291 33 100.0 35 ................................. CTTTTGTAAATCTTTATTCCCGTCCCGCGCGTCTG 226223 33 100.0 34 ................................. TATTGATTACTGTCACCCTGTCCATAATCGTTGC 226156 33 100.0 34 ................................. TGCAGTGGAAGTTTTTGGACGCCGCTACTTGGTC 226089 33 100.0 32 ................................. CTGAAAATTCGTATTCCGGCGTCGTCAACAAT 226024 33 100.0 35 ................................. AACGATACCAATTCGATTATATAAATTGGTAGATG 225956 33 100.0 33 ................................. CTGGCTAATCTTTGCATAACACTGTAAAGTTGT 225890 33 100.0 33 ................................. ACTCCTCCAGCAATGGCGCCGCCCCAAATGACA 225824 33 100.0 35 ................................. CTGCCGGGCCATTAATACCAACGTTACAGGTACAG 225756 33 100.0 33 ................................. CTGCTGTCCGCAATCCAGAAACCACAGCCCCTG 225690 33 100.0 35 ................................. TTCCCTTGCTTTTCTGGCCGACTCTGCAACTTCAT 225622 33 100.0 33 ................................. AAATATATCGCGGTCTTAAAGGACAAGATTGAC 225556 33 100.0 35 ................................. TCCTTCTCGATGTCCGAAGTACGCGGACTGACGAA 225488 33 100.0 35 ................................. TATGTCCGTTCCCTTGATGATGCGCAGCACGTCGG 225420 33 100.0 36 ................................. CAATACGGTTACACTGTAGCTTTCCTGAAGTTCGTC 225351 33 100.0 34 ................................. TAGAGCTGGGCGGCTTGTCTAACCAGAACGGCGT 225284 33 100.0 36 ................................. CTTGATTTGTAGGGTCTAATTTGATATTATCTTTAT 225215 33 100.0 33 ................................. AACAACAAAAACATCATATCCATTTTCTGAAAG 225149 33 100.0 34 ................................. TTTCGCCCCATTCTCGTGATAAAAATCTGACCAT 225082 33 97.0 34 ...........T..................... TATAAATTCATCTGGTACGTCGATCCGCAAATCT 225015 33 90.9 0 ........A............A......T.... | ========== ====== ====== ====== ================================= ==================================== ================== 28 33 99.6 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : TTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATTACATTGCTTGTTTGAAAACTGTAGGGTTGACTATGGGTTGATTTGATGGGTATTGATCTTTAGTAAGAAGAACCAAGTGCGAATAGTAGTTGTACATAAAATCCCAGGGAGATTCGCACTACAATTGGCCGGAAAATACTATTAAATTACGCGAGGAAATTTCAACTTGATAAACGATTTGTAGAAGATGTATAATATGAAGCATGTAAATGTGGCATAGATGCAAGAATAATTGTGCATTTTTGCC # Right flank : TTTACAGGTGGAATATACTTTTTTATAGACCTTGTAAATAAAATCGCTTAATTTAGATTTGCTTCACTTAGTCTGTTCGATGACGCTATCAAAGCCATATCAATTCCCCCACCAAAACTAATTCAAAATAATGATTGACTTTTTAAACTGTAACAATTATACTTACAGTAAAGAAGGCAGAACATATATTTCCTAATAATAATATAACTAACACACAAAGAAGTATCAGAACCCACTTATCCATCAATAATATATACATTATTTAAAGGGAAATCCCATCTAATAATTGCAATACCACATTATTTATGAAGATAAATAGTCGAAGGCCATAATAAAGATATGCTCAGGAAAGAAGGTATATAAAAATGGTAGTAAACTTAAAATCCAACACAGAACCTAATCCGAAACCAGACGATAGCCAAAACTCGGAGATAAGCAAAAATACGAATAATGATATCATACCCACTCAAAAAACTAACATAGAAAACACGACAAAACTC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 228283-227582 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKPP010000006.1 [Clostridium] symbiosum isolate MGYG-HGUT-01367, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 228282 33 100.0 34 ................................. CGACGCCGGAGGAACAGAGTCTGTCTACAACGAC 228215 33 100.0 33 ................................. GTCCATTGTCGTATAACCCATTCTTTATCATGC 228149 33 100.0 33 ................................. GCCATTTTATCAATCTGGGGAGAGCGTTAAAAA 228083 33 100.0 33 ................................. TGTTTATTGCAGGTATATTCCTGCCAGACATAG 228017 33 100.0 34 ................................. TTCCCAAGATTTTCTTTCTATCATCTAAAATCCT 227950 33 100.0 34 ................................. ATCGGGTAAGTTTCTGTAGGGTAGTAGTCTGCAT 227883 33 100.0 34 ................................. TCAGAGGTTCGCTTAAGTGGCATATTTGCGATAT 227816 33 100.0 35 ................................. TCGTTAATCAATATATACCCGATAATATAATCATT 227748 33 100.0 34 ................................. CAGTTGATTAGCAGTGATATTATGCTTTTTGCAC 227681 33 93.9 34 ......A.....................A.... GTTCCAATATTCGGATATGATTTTCCGGCAACTG 227614 33 97.0 0 .................T............... | ========== ====== ====== ====== ================================= =================================== ================== 11 33 99.2 34 GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Left flank : ACAAGAAACTTGAGGCTTATTTTAAAAGTAAAATGAAAGCGTAATAAGAGAAGCTGATATTTGGAGATAGGATTTTATCTTAAGCGGCTTTAAATTAGTGTGAAGCGCGGAATTATAATCTGTTATATACTTTGTTCATATAAAAAATATAAACATTTATGTAAATACATTTGAATTCTTCGAGCGTGACAAAACATAATAAACTGCTGGGTACACTGTTAACTGCGACCGCCATTTTAAATGATTGTTTAGGATCGTACGGGAAAATTTAGCACATATGGATAATGGAGGTAATTTAAAAGAGGGTTGATTTTTAGTAAGGAAGCTCTGGTGCGAATAATAGTTGCACATAAAATTCCAGGGGGATTCGCACTGCAAACGGCCGGAAAATAGGATTAAAATACGAGAAAATTTTTTGACTTGCTGGATGATTTGTTGAAGGTGTATAATTAAGATATATAAATTTGGCATGGATGCAAGGATAATTGTGTATTTTTGCT # Right flank : TCAACGACTGGAAGTTGGAAGCACTTATGTCGACTATACATCTTTACTACTCACCTCGAAATACTCTATAATTCCCAGTGTTACAAAGAAAATATATTTAAAAGGGAAGGGGAAAGCTTCTATGGCAAAAGATATTAATATTCAGGATTTAATAAACAAGATAAATAAATTTAGAGAGGAAAGAGACTGGAGAAAGTTTCACAATCCTAAGGATTTATCAATCTCCATTTCACTTGAAGCATCAGAATTGCTGGAATTGTTCCAATGGAAATCAAGTGAGGAAGCGGTAGTAAATAATCTGGATAGAATGAAGGATGAAATTGCTGATATCTTTATATATCTGCTTATGCTTTCGGATGATTTGGGGTTAGATCTTTTCAGTGCGGTTACTGAAAAAATGAATAAAAACAACGGAAAATATCCAAAAGAGTTATGCAAGGGGAAGCGTGATAAGTATACAGCCTATTTAGAGTGAAAATTAAACATAATATTTCATTATT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGAGGCTCGTGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 120457-107993 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABKPP010000005.1 [Clostridium] symbiosum isolate MGYG-HGUT-01367, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 120456 32 100.0 33 ................................ AGGCAACAGGTAAAGCATCTATAGCTCCTACTA 120391 32 100.0 34 ................................ TTTTATATGTCTCTACCCACCTTTCAGGAACCTG 120325 32 100.0 34 ................................ TCAAGACTATTGATGGGGTTGCTGAATCAGGTGT 120259 32 100.0 34 ................................ ACTGGTAATCATTCTTTCCTTCTTGTCAGTATTC 120193 32 100.0 35 ................................ TTCGCCTTCTTTTCCACCTTGAGCAAAGAACACAT 120126 32 100.0 35 ................................ TTACGTCAAAGCTTCATGGTGTGCAACTACAGTTT 120059 32 100.0 34 ................................ TTAATCTTTATTATGCTTCTTCCTGCTTGTCCGC 119993 32 100.0 35 ................................ AAACGCATCCAGCCTAATATTCAGCGCCGTAATCG 119926 32 100.0 34 ................................ CTGCAAGATTCAATATCGAGTCTATGTCTCTGGC 119860 32 100.0 33 ................................ ACTGGTAATCATTCTTTCCTTCTTGTCAGTATT 119795 32 100.0 33 ................................ TTTATATAATCGTTCAACGCCCGGTTTGTTGTT 119730 32 100.0 33 ................................ GATTGATTTGATTCTGGACGTTTCAATATCAAA 119665 32 100.0 35 ................................ TTTGTGGAAACTTGTAAGCATATTAAGCCAGTCAT 119598 32 100.0 34 ................................ AACCCTAACTTCCTGTACTTCCGTAATCATCCAG 119532 32 100.0 35 ................................ AACCGATTCAATAATTGGGCTGTTTCCATCTGGAA 119465 32 100.0 35 ................................ CGAGGCATTTACAACTTCCAGTCAGACGAGGTCTT 119398 32 100.0 34 ................................ TCAACCATATCAAACATGCGAGGTTTCGATGCAT 119332 32 100.0 34 ................................ TTGCAGGAGAAGGGAGAGGGAAACGATGAAAATT 119266 32 100.0 34 ................................ TCTTAGCTTATCAGTGGGGAGTCTGGACGACGGC 119200 32 100.0 34 ................................ TTTATATAATCGTTCAACGCCCGGTTTGTTGCTT 119134 32 100.0 34 ................................ GTTCCTGAACGCCTGAAACTGTGCTTCGAATTTC 119068 32 100.0 34 ................................ GCCAGAGACATAGACTCGATATTGAATCTTGCAG 119002 32 100.0 35 ................................ TTCGCCTTCTTTTCCACCTTGAGCAAAGAACACAT 118935 32 100.0 34 ................................ CTGAACCAGATTAAAGAACTGGCAATATAACTGC 118869 32 100.0 35 ................................ AACATTGCTCCGCAGTTTCCAGATGGAAACAGCCC 118802 32 100.0 33 ................................ GTTCCTGAACGCCTGAAACTGTGCTTCGAATTT 118737 32 100.0 34 ................................ AAACTCTGCAAAACTCATCGGATAGGCACCTGTA 118671 32 100.0 34 ................................ CGAACTTGTCCGTATTAAATATGGCAAAATAGCC 118605 32 100.0 33 ................................ TGGAACTGCCTGTAAAGCCCGGTATTGTGAACC 118540 32 100.0 33 ................................ GCTTCGCTGTTGCGAATCATTTCTCGCATTAAC 118475 32 100.0 34 ................................ AGCCTGAAACACCGGAGGATATACTGGCAAGTAT 118409 32 100.0 34 ................................ TAAATGAATCTTCCATGGAAGTTCTACAGCTACA 118343 32 100.0 34 ................................ TTACAGGACTTGCACTTACGAAAGAAACTGTATA 118277 32 100.0 36 ................................ CCTTTCCTGCTGTATCATCTGCTGTGTGGTAGTAAC 118209 32 100.0 36 ................................ ATATATTATCCTCCTCTACCTTGTATGCACAAGGTT 118141 32 100.0 34 ................................ TGATTGTGTACTGAAAGATACAAGCGGAGTAATT 118075 32 100.0 34 ................................ TGGATTGACTGCCAATAGTTCACAGTTTCATTGT 118009 32 100.0 34 ................................ TGAGTAAATGCGAGCTTTGGCTGGAAGAATTACA 117943 32 100.0 34 ................................ CATCTTGCGCGTATATTCCGCAAGTGACATATTG 117877 32 100.0 34 ................................ CTGCGATTGTGACCGTCAAGCGTCCGTTCTTTAC 117811 32 100.0 35 ................................ AACTGATTCAATAATAGGACTGTTTCCATCAGGAA 117744 32 100.0 33 ................................ GTCTTCGCATTTCTTCTGCTTTCTTGACCAATC 117679 32 100.0 34 ................................ TTACGTCAAAGCATCATGGTGTGCGACAACGGTT 117613 32 100.0 34 ................................ TAAGTGCCTTGTATGTTTCAAGGTCTGGAAGCAT 117547 32 100.0 33 ................................ CGCATATTGCGTTAAGTGTCCATCCTTTCGCAT 117482 32 100.0 34 ................................ AAGTTCATTACCAGCGGCTGTTCTGCTATCCAGC 117416 32 100.0 35 ................................ CTTTTCTGATATGGTTTTTTGGTTGCTGGTTTACT 117349 32 100.0 34 ................................ AACGTCTTTAAGCCTTGTCTTGCTTCTGTAATAT 117283 32 100.0 34 ................................ AACGTCTTTAAGCCTTGTCTTGCTTCTGTAATAT 117217 32 100.0 34 ................................ CTTTTAACTTCTCGTCAACTGTTTCTCCTGCAAG 117151 32 100.0 33 ................................ TGTGAATCCCTGTGTAGCCATGAATTCTATCTC 117086 32 100.0 35 ................................ CCAACGTGTTATTCGCATCACCTATTATACCTACC 117019 32 100.0 35 ................................ GGATATCAATATGATTACCAATCAATTCTATTGCA 116952 32 100.0 35 ................................ CGCTGGTTTGCGTTCGCGCTTCGCGCTCACTGGCC 116885 32 100.0 35 ................................ CCTCACTGAAATTGACATGTGGAGATACCTATAAT 116818 32 100.0 34 ................................ AGTTCCCTTATGATAATCAACAAAATCTTCAGCA 116752 32 100.0 35 ................................ CCTGTTCCTTGTAAGTAAATTTCACCGTTACCTTG 116685 32 100.0 34 ................................ TGGTAATTTCTGTTGATGTTTGCACTATAAGCTT 116619 32 100.0 36 ................................ TTTGAAACATTTGTTGCTGTAGGTCTTGCAGTTCCG 116551 32 100.0 34 ................................ TGTACTTTGCAAATGAAGGGGCACAGTCCAGTTA 116485 32 100.0 35 ................................ ATTGAAGCAGGATATCGTCCAGATGGTTCTTCAGT 116418 32 100.0 35 ................................ GCCAATTTTTACGGCAGACTACCACCTCCGCTGTG 116351 32 100.0 33 ................................ CTTTTGCGTCGTATGCGTCTGAGTCAAGTCCGA 116286 32 100.0 30 ................................ GGCCGCAATTGGCTATCAGACAACTATCAC 116224 32 100.0 33 ................................ CGCGGCTGGCTAAGCGGATATCTTTCGGGCCGC 116159 32 100.0 35 ................................ CTCAAAATCCCTTACAATAAGGGTGTATTTGTTTT 116092 32 100.0 36 ................................ GGTTAAATTGTTATTTTTGGATTCGGCGGGATTACG 116024 32 100.0 33 ................................ TGCAACTTCATCCACCTGTCGGGCCGTCGCCGC 115959 32 100.0 35 ................................ GACAATCTGTTTTATCGTATAGGGTAAGCCATGCC 115892 32 100.0 34 ................................ TGCGTATCGTAATATCAACTTAACAGTTGCTGTT 115826 32 100.0 34 ................................ ATATCCCTTGATTTTCCGGTGTTCATCCCGGTTT 115760 32 100.0 33 ................................ ACATTCTAAGCATAGTATATTATATTCATCTGT 115695 32 100.0 35 ................................ TTTCACCAATTTTTAAATCCCCACAATTAGCAGAT 115628 32 100.0 36 ................................ CCTTCGTGCAGATGGAAACATAGTGACGGGAGAACT 115560 32 100.0 33 ................................ TCCGGTTTGACAGGTCAATACTGTCCCGGTTAA 115495 32 100.0 35 ................................ CACTACAATTACTTGGTATTCAGCAACAGTTACCC 115428 32 100.0 33 ................................ ATGGCCGGCAAGGCTTGCGAAAAGCCGTCTATT 115363 32 100.0 34 ................................ GGTATCAACTCGCCGTCAAAATTAATGCGAGATG 115297 32 100.0 34 ................................ CTTTAAGGCCAGAACCACTGGCCGGGCCAAAAGG 115231 32 100.0 33 ................................ ATCATCAAACAAAATTCCGTAAGCCTGACCATA 115166 32 100.0 34 ................................ GCCGGGATGATGGCAGTGGACCGCGATGCATGGA 115100 32 100.0 33 ................................ TTTTTAAAGGTTGTAATATTTTATGTAATATTG 115035 32 100.0 33 ................................ AATTTCAGCTTCATTTTTTAAAATTAGTTTGTC 114970 32 100.0 33 ................................ TTCTTCATAGTCAATTTCAGTCATGGTAATTCC 114905 32 100.0 35 ................................ GGTTTTGCTGGCAAGCATGCCCGTGATGTAGTCTA 114838 32 100.0 33 ................................ AAATGAGAAAGGGTCCCACGGCCAGTCTTCGGC 114773 32 100.0 33 ................................ CAAAATCCACTATCTGGTCTTATTTATTGCGCG 114708 32 100.0 33 ................................ TTCGATGTAAGCACTGTTTACGTCGTCTCTGTC 114643 32 100.0 34 ................................ ACTTCAAATCGAGCTTCCGGAATTAAAAAAGAAG 114577 32 100.0 34 ................................ TGTAATCAAATATTCTATATGTTTCTGCAAGGTC 114511 32 100.0 32 ................................ GCTCCAGTACTGGTGGGAGTTCAACAGAGTAA 114447 32 100.0 35 ................................ CGGACAACCTGTCGCAAGTGCAGATTAAAAACGGC 114380 32 100.0 35 ................................ CTAAAATTGGACCCGTCAAATACGGAATTATTAAA 114313 32 100.0 35 ................................ CCCTTTATGCACGTATATCCGCTGTTGCCAGTACG 114246 32 100.0 33 ................................ CTGAGAGATAGAAAGTTGGGACAGGTGATAGTT 114181 32 100.0 33 ................................ AGCCGGAAGATCCTGGAATGGGAATGGTACGGC 114116 32 100.0 34 ................................ CTTTCTGCTTTTATTCAGCTAAAACTTCAATATC 114050 32 100.0 33 ................................ ACCAGCGGAAGAGTGAGGGTCCCGTAAAGAAGC 113985 32 100.0 34 ................................ CGTGGAATCATCATACTGAAAGTCCGGCAATGTA 113919 32 100.0 36 ................................ TATAACATCAGTAAGACCAGAAACATAGGGCATACA 113851 32 100.0 33 ................................ AGGAAGAGCTGAAGGTGAGTGAATGGGCAGAAC 113786 32 100.0 34 ................................ GGCTACTACGTGTCCCCTTTTTGTAATACCACAG 113720 32 100.0 34 ................................ GACTGTTTGGGTTGGGAATCGCGATCATAGTTTT 113654 32 100.0 34 ................................ GTACAGATAATCAATATAGATTTTCCCATTCACG 113588 32 100.0 33 ................................ AGAGCTTTTTTCAAGTGGGCCTATGAATATGAC 113523 32 100.0 34 ................................ AAACGGCTTTTGATATCAATTACACATCCGGTTT 113457 32 100.0 33 ................................ CTGAGAGATAGAAAGTTGGGACAGGTGATAGTT 113392 32 100.0 33 ................................ GGATACTGGATGCCCTGGCCGGCAGCGGCCTGC 113327 32 100.0 35 ................................ TCTGGTTTTGGCCGGAACTATTTTTGCCGAGTGCC 113260 32 100.0 34 ................................ GTTAATATCAAATTCTTTTGTTTCAAGCCAAGGC 113194 32 100.0 34 ................................ CTGTGCTAAACCAACATACTTTCATACCACCACT 113128 32 100.0 35 ................................ GTTGAGTGGGGTGGGATAGATGAAGTCTTGCAAGC 113061 32 100.0 37 ................................ CGCGATGGGTTCCGTCTTTATCCGGGCGGTTCCTCAA 112992 32 100.0 33 ................................ CGCCCCGGTTGAGTCCCACCGAATGATTTTCCC 112927 32 100.0 34 ................................ CGGCATAGGTCAGTTCCCGGTCCGTCGGTATCTT 112861 32 100.0 35 ................................ CACCGTGCCGGATATGCCACCCTCTTCCGGCAGTC 112794 32 100.0 35 ................................ CGTTTAGCCAAACTGTTAATGTAACAGGAGCTACG 112727 32 100.0 35 ................................ GTCCGGTGTTTCCGGCTGTGTGGGGTCTGCATGCT 112660 32 100.0 36 ................................ TGTGGAGATTCTTGGCTTCACGTGGCGGTGCATCCA 112592 32 100.0 36 ................................ AGCCGTTCGGCAACGGCAGCCATGATGAAAATCCCC 112524 32 100.0 33 ................................ ATTTTAAATTCACCAATAACCGGATAACCTAAA 112459 32 100.0 34 ................................ CAGCTGTATTGTCCAGGAAATACCAGTCGCCCGG 112393 32 100.0 34 ................................ ATTCCACGGAGAGCCGATTGTCGGCGATTTCATT 112327 32 100.0 34 ................................ GGCCATATTGCAGAACAGGATTGATTTCTGCGGT 112261 32 100.0 33 ................................ TGGAGCAGAAGCGTCAGTGGAAGGATGAGGACG 112196 32 100.0 34 ................................ AATTCAATTAATTCTTTTTGATAACCAAGAATCC 112130 32 100.0 35 ................................ TGGATTTAACGGGATTGGACGATATGACGCTGGAT 112063 32 100.0 33 ................................ CGTGTAACAATACGCCGGCATCACCGCCGACCA 111998 32 100.0 34 ................................ TTCTTTTCCATCAAATTGCATCATACCCATACAA 111932 32 100.0 34 ................................ CCGAATATCTAGCAGATTGTTTTTTAAAGAACTT 111866 32 100.0 36 ................................ TTGTTATCTGCTGTTGCATCGTCTATGAAATTACTT 111798 32 100.0 33 ................................ CGCAGGCAGAGCCGATGAATTTTTTCAGTCTAT 111733 32 100.0 33 ................................ AGATGAGTACGGTACAGGCGATTTCCCAGGCAT 111668 32 100.0 34 ................................ GGTACACTGTCCGGAATGATGTCAGCTTGGCCGG 111602 32 100.0 35 ................................ TCTGTTATACCAAAGTTCAAACTGAGAATATCCCT 111535 32 100.0 33 ................................ TGGAAAGCCTGGTGGAGCCGGTCAAGCCCACAC 111470 32 100.0 34 ................................ AAACATTCTTCGCATAGTCTCCCAACGCTCTTAG 111404 32 100.0 34 ................................ GGAGTGAACGCACCTTTGAATTGTACGTTTTATC 111338 32 100.0 35 ................................ ATATGATCGTGAGGGCTGCACAGATATAGAGAGAG 111271 32 100.0 34 ................................ TCGCCGGGTCATGAAAGGGGAATGATGGCAAGAA 111205 32 100.0 35 ................................ CTCCATCGATATGATCTGATTGTGTTATTTTAATT 111138 32 100.0 33 ................................ CCTTTTCAGACCTACGTTACAATTTATAAAGAT 111073 32 100.0 34 ................................ GGGAAAATTGATAGGGACGGATGCATGTTCAACC 111007 32 100.0 33 ................................ TGCGATGAATGCAGGCAAAAGGTCCGGGGCAAG 110942 32 100.0 33 ................................ GATAAACAGGTGAAGGCCCTGGACAGCACTATT 110877 32 100.0 33 ................................ TGTCACGACAGGACGGTTTCCGTTATCCGCTTC 110812 32 100.0 35 ................................ CGGAACTAAGGTCGCTACAGCATTATATTTCTGTA 110745 32 100.0 35 ................................ ATCATTGATTTTCCCATCCTGTCCCATGACCTGAC 110678 32 100.0 34 ................................ CTCCACCCCCTTACCATGAAGGATATTGCAAGCG 110612 32 100.0 36 ................................ TTTCTGTGCTATAATTTCCTTATCAAGTGCAAAGGA 110544 32 100.0 35 ................................ GATGACGCGGTTCTTGCTCCCGCCCCCGGAATTGG 110477 32 100.0 33 ................................ TGGCCGAATTTTCCGTTCGAAGAGATGGGGAGG 110412 32 100.0 33 ................................ TACTTGTGATGTTGGTATTAATGGCCCAGCTGG 110347 32 100.0 33 ................................ GGTCTGACCGCCCGTTACACTTAAGTGGCATTG 110282 32 100.0 36 ................................ CGGCCTCCGTGCCTGTAGAATCAGCGTTTCAAACTT 110214 32 100.0 35 ................................ CCGTATGCGGTTCCCTTGGGTACACAATGGAAGAT 110147 32 100.0 36 ................................ CTGGGTCAAAGTATTAATGTTCCTATCCATCAAGGC 110079 32 100.0 33 ................................ TACTCCATCCTATTGTGCTGCCCAGGTATTTTC 110014 32 100.0 35 ................................ CAACGACCAAGGCAATAGCCGCTGCAATTGCAAGC 109947 32 100.0 35 ................................ AAAGCAGGCGAAAAAACAGACACCGCTTGCCTATC 109880 32 100.0 35 ................................ ACGCTTTCGCTGATGGAGTGACTATGTACGAGGTC 109813 32 100.0 33 ................................ TTTTCCGAATGCTTTAAACGATGATTCAATTTC 109748 32 100.0 34 ................................ GGAGCTGTTCGGACCCGGACATGTTGTCCCATTT 109682 32 100.0 35 ................................ TGTGGCAATCTGTGCATAACATGTCAGTGTCGTAT 109615 32 100.0 33 ................................ TTTTATCTTGTCTTCAATTTGAGCTTTTGATAT 109550 32 100.0 33 ................................ TTCTATAATGCAATCTTTTATTTGAACATTCCC 109485 32 100.0 35 ................................ AACGATACGCTGCAGGGCTGCCCACTGCCACTTAT 109418 32 100.0 34 ................................ CAACTGCCTTCTCAGGCCCAGACAACGCCGCCTT 109352 32 100.0 34 ................................ CCGAAAAATCAGAATAGTCAAGACCTAACACAAT 109286 32 100.0 34 ................................ GACACATACATCGCACACCAGGGCTGCGCCTGGA 109220 32 100.0 34 ................................ CTTATCCATTCGACGATTCTTCCACATTTCAGGT 109154 32 100.0 34 ................................ CTTTCTTTCCTTCATATTACAAAAAATGTGGTGA 109088 32 100.0 33 ................................ AGGTCTATGCCAATACCGGTGCCGGAACTTACG 109023 32 100.0 34 ................................ ATTTGAAACGATGATACAGTTTATTGCGCAGGTA 108957 32 100.0 34 ................................ ATTCCATGCGTCTTCATGAGGCCAGCCAGATTTC 108891 32 96.9 34 C............................... ATCCAACGGACATTGAGTAATATCCAGGATAAAA 108825 32 96.9 34 T............................... TTCGATTCGCATCCCCCGGTTTAAAAGGTCCGTT 108759 32 100.0 36 ................................ GTGACAATTATGTGAGTCAGGGGGATGAAGGTAGCT 108691 32 100.0 34 ................................ ATAGCGGAATCATTTTGCAAAGAGGAATATGCTT 108625 32 100.0 33 ................................ ATCCAAACGACACATTTCTACAAGCTGGCTGGA 108560 32 100.0 36 ................................ TACATTTGTTACCAGATGTATTTTGGGAGTCAGAAA 108492 32 100.0 34 ................................ CTATTGCGATTTCCATCAGCCCGAACAGGATATC 108426 32 96.9 35 .........................G...... CCGTAAAAAGGGCAAGGTAAAAATATGTGCGCCAT 108359 32 100.0 34 ................................ ACTGTCGATTGCATATGCCAGCACCTGAGAAACT 108293 32 100.0 36 ................................ TAAGTTTCGCGGTTGGCGAGAAATTAACGGTTTTGT 108225 32 100.0 35 ................................ CTATCAGAGGACAAATTAATGTCGCGCGCTGTCAA 108158 32 100.0 35 ................................ CTGAGATAATAATAATAGTTGGTTTGGGTATCACA 108091 32 100.0 35 ................................ GTTCCGTAAACTTTCATAAACACACAGCTTTTCTT 108024 32 87.5 0 ..........................T..GGT | ========== ====== ====== ====== ================================ ===================================== ================== 189 32 99.9 34 GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Left flank : GAAATGAGGTGATGGATTTGCTCGTTCTTATAACCTATGATATTAACATTACAGAAGCCGCAGGGGCCCGCCGTTTAAGGCGCGTAGCCAAGCAATGCGTAAATTATGGCACACGGGTACAGAACTCTGTTTTTGAATGTCAGGTGGATGCAACGCAATATGTGAAGCTAAAACATCTTCTGATGAAAGAAATTGACGAAGAAAAAGACAGTCTGCGTTTTTACTCTCTAGGTAATCATTATAGCGGTAAGGTTGAGCATTTTGGCGTGCGGCGCGGAATACAGGTGGATGAACCTTTAATTTTATAAAAGAACCGCAGGGAAGATGTCTTGCCTTATCAGTGCGAACCCGAAGTGAACATGAATTCTGTGGGAGGTTCGCACCTGGATTTTGGTGTAAATTGGAGGGGATTCTGGTTTAGAGATAAAATTAAATATCATATTTGGATGATTTGAATAAAAAGTAATGTAAAAAACACTCTAAAACCATGAATTTTTGCT # Right flank : TTTATTGGCGCAAAGAGATGTGGATTCCAGTGATAAGAGATCGGCAGATGAAATCTGTCAGCAGGAACTGAAGAATGCTGTCTGCATCACACTTAAGGAAAAGGGGAGTCTTATGAAAAATGTGATCCGGACGATGGGGTATGCCCGAAGCAGTACTTCCTTAGTGGAGGCTGCTGAAAAGGGGATGAAGTATGGAAGGAAGACAGGGGAGATTGTGCAGGATGAAGAGAAGCGGTTTAGTCTGGGAAATTGACAATCTTGCTAAACTGAAAAGTGCAGTTCGCTAAGGAAGAATGATACCCGGTGTCAGAAAATAGTTTGGAGAAACTGAGTAACAACAACAGCAAAAACAATCATTCATAGCGATTAAATCACCAGAAGAATTTACCTGCACATTAGGAAATGATTAATAAATTCTTTAGCATTCAATAATACAATAATTCAAAAGATTTATTATAATGTTAGAGGAGATAAAAATCATGGAACGTGAAGTGTATAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GGTCAGGCTCGTAAGAGCCTGTGGATCGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.00,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //