Array 1 29965-27557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAACZG010000022.1 Vibrio cholerae O395 strain O395_VB NODE_22_length_70360_cov_47.850362, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 29964 28 100.0 33 ............................ CAAATGGCTCAATGCGCGATTGACTACGTTACT 29903 28 100.0 33 ............................ CAATCAACGCACTAGACAACGCCCAAATGAACC 29842 28 100.0 33 ............................ CAACGCTATGCCCGCTAAAATCAGTAAACAAGA 29781 28 100.0 33 ............................ TATATTTCGCTCCCGTCTCGTCAACTAAAATCA 29720 28 100.0 33 ............................ CTTCAAATAAGTAACCAGCCTCTGACGCTGTTA 29659 28 100.0 33 ............................ CACCGCTAATCATGGTGGAACGAACGCCATCAA 29598 28 100.0 33 ............................ TGATTTTGGAAGTAATGGGAACTGAGCGTTAAG 29537 28 100.0 33 ............................ CCAAAAACCTACGCGGTTTTAAATGGATTCGAC 29476 28 100.0 33 ............................ TATCTTGGTTTTGCAGGTTGTTAATCTCAGCGT 29415 28 100.0 33 ............................ TGATTGGTTCCAGTTTATGACAAGAACCAACAC 29354 28 100.0 33 ............................ TACATTGGCAAGACGTTTGTTTTTCGCTGTGTA 29293 28 100.0 33 ............................ CGACTTTTGCATCATCGATGTACGGAACGCTAG 29232 28 100.0 33 ............................ CACTGAGATTGCGTGTCGCCGACTTGCGCTTGC 29171 28 100.0 33 ............................ TAGACTATCAATGTGCGCTTGCAAGTCTTTTAA 29110 28 100.0 33 ............................ TTGATCGCTCTGAAATTGTGACTTGTTTTGTTA 29049 28 100.0 33 ............................ TAGATCTTAATTGTTCGCGTTGAATGGGAAATT 28988 28 100.0 33 ............................ CAGATTGTAGATAAGCAGGAGACTGCCCACCAG 28927 28 100.0 33 ............................ CGGTTGATAAAACGCTGCGTAAGTTTTTCGAAG 28866 28 100.0 33 ............................ TAAAACTTCATAGATTGTTGCCTCCATTGTTTC 28805 28 100.0 33 ............................ TACGTCAACGGACAAACCAAAACCGAATGGAAG 28744 28 100.0 33 ............................ TAAGTAACGCTGCTACTGCCCTGAGCTAGTACC 28683 28 100.0 33 ............................ TACTGGCCGATGAGGTGGACCGCTACGGCTTCA 28622 28 100.0 33 ............................ TCACCCAGCACATTACCACCCATGATCAGCGTT 28561 28 100.0 33 ............................ CGAGTGGGTTTAGGTTGTAGGTTGCACATACGC 28500 28 100.0 33 ............................ TTCGAAAAGCTATTAGGCGGCATAACCACAGTT 28439 28 100.0 33 ............................ CAACAAACCAGCCACTTTGCATTTTGTAGCAGA 28378 28 100.0 33 ............................ TGGAAGTTATTTATATTGGACCTGATTGCACGG 28317 28 100.0 33 ............................ TACTTTGGGCCTTGTTTTATGTGCCAGTGCCCG 28256 28 100.0 33 ............................ CCACTATTTCAATAATCGGCGTAGCTCCGACTG 28195 28 100.0 33 ............................ CGTAATCTTCTTTGTCTGAGTAATCCAAAATAC 28134 28 100.0 33 ............................ TCATGGCAGCGATATTTGTTTTACCCTTCATAC 28073 28 100.0 33 ............................ CATCTGGAACGCACTCAAGCGGCAATCCGAAGT 28012 28 100.0 33 ............................ CAGCAATGTGTTATCCAATGCGAAAGCGCCGTT 27951 28 100.0 33 ............................ TATTTTGCGTATCACCGAAGCGCTGTAGGTTAT 27890 28 100.0 33 ............................ TACGTCCAGCATTACCGCCGCGCCGTGTCGAGT 27829 28 100.0 33 ............................ TCCTCCCTGCTCATATGCCGTTAAAACTTTCTC 27768 28 100.0 33 ............................ TCTGATGCGGCAAGCTCTTTCGCTAGCTCGATT 27707 28 100.0 33 ............................ TACAACATCCATGCAAGCGGCAAAGAATACAAA 27646 28 100.0 33 ............................ CTCTTTAATCGAATTCCATAACGGTGACGTTAA T [27625] 27584 28 71.4 0 .................T..AT.ACAGA | ========== ====== ====== ====== ============================ ================================= ================== 40 28 99.3 33 GTCTTCCCCACGCAGGTGGGGGTGTTTC # Left flank : CTTTACAAAGAACACCTTTGTATTGATTTAGCTTTCTCACTTACACGAGATATGGCAGGTCACTATGACAAACACAAGGTCTCTGATGCGTTTCGAAAACGGGTTATCAGCATGGATCTGTTACAACAAGTCTCCTCGGATATCAATGAGTTGATGGGAGGGGGAAATGCTCGTCGTACTAGCAAATGATTTACCCCCGGCAGTCAGAGGGCGTATGAAGCTATGGTTTGTTGAACCCAGAGCCAATGTGTTTGTTTCTGGCGTAAAAGATTCCGTTGCAGTGACGGTTGTCGACTACTTAATGCAGCATTGCCCAGCAGAATCGGGCTTGATGTTATTTCGCAGTATTCCAGATCCCCCTGGTTATGAGATTCGTTACAAAGGTGAAGTGCGCAAACCCGTGATTCAGCTCTCTGGATTACAGTTGATTGTCGAAACCCTTATTTTGTCAAAATAGCAATATATGGGTTTATTACTGTGCTCTTTAACAATATATTGGT # Right flank : GTTTTATATAGGCTTAATCTTTGAGTTATCAGTGAGCCGGATATGGAAATGACGGATAAGTTAGGAAAGTTATTGCGAATTAAATGTTGAATTTACTGAATAGAGGGGCGATATGATGATTCTACTACAGGGTTATTTGCTTGGGGCTGCGCTGGTGGCGTGCGGCTTGCTGTGGGTGATGGTCAGGCACTTGGATAAGCATGATTGGCAGTGGGACAAAGGCGACATCTGGTTTCATTTTGTGTTTATGGTGTTGTTCTGGCCTTTAATGCTGTTTGGTTGGGTAAAACAGGGCAGGCCTAATTGGGCTGATTGGCTGAAACCTACGGCTAATCGTGCCGATTATTACCGAGAAATGGAACGTGCCTATCGAGAACTGAAAACCTGTGGCGCTTATGTTAGCTATAAACCTAAACCAGAGGGGATTTGTGACAACAGCTACGGTGAGTTTATTTTTCCTAGCGCTTTGCTTGAGAAGCAGTTAATTGAGCGACTGCGTC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCAGGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.40,-12.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //