Array 1 1-2016 **** Predicted by CRISPRDetect 2.4 *** >NZ_OAHL01000031.1 Neisseria meningitidis strain Neisseria meningitidis isolate 22114, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 67 36 97.2 30 ........G........................... GGACGGCGGTTCTAAAATATGAAAACTCAA 133 36 100.0 30 .................................... GGTCAGATTATAATAACGTTGAGCGCGTGT 199 36 100.0 30 .................................... CTGGAAGACTGGTAAGAAACGAGATGCACA 265 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 331 36 100.0 30 .................................... CGATTTACCACCCATAAAACCACCTCAAAA 397 36 100.0 30 .................................... TAATTTGCGTTTCGTGTCGCTCATAAACCC 463 36 100.0 30 .................................... ATAAGATGGGAAAATTACCATGAGGCCTGC 529 36 100.0 30 .................................... CTTGATAAATGCTCCCCTGTTCTGCTAGAG 595 36 100.0 30 .................................... CTGCGAACATGGCGACTCCTGTTTATTTAA 661 36 100.0 30 .................................... ATGAGATTTGCCGTCTGCTGTTTGACGACT 727 36 100.0 30 .................................... CTAGCTAGTTAGTTATGCAATCGGTAAGTC 793 36 100.0 30 .................................... TGGATTTTGCCGCCGACGCAGAAAGCTGCA 859 36 100.0 30 .................................... TTTGCTTCCTTTTAAAACTGTTTTGACAGG 925 36 100.0 30 .................................... GGCTCGAAGTACCGCCCGTTATCCGCGCAG 991 36 100.0 30 .................................... TTACTTTCTTGGTTGGTCTTCTTGATGTTT 1057 36 100.0 30 .................................... CTATTGCGTCAGCAGCAGCAAGAAGTCCGT 1123 36 100.0 30 .................................... TAGAACTTGACGGCGGTTTGATTTCGGCAA 1189 36 100.0 30 .................................... AACCGTCTGCACCGTAAATGTAATCAACTT 1255 36 100.0 30 .................................... ACGGCATTGTTTATAGATTCCTCACATATT 1321 36 100.0 30 .................................... CTTCGATGGCTTCGACGTTGAAGCGTTGGT 1387 36 100.0 30 .................................... TCCCCCCCTTCATCATCGCACCGACCTGCC 1453 36 100.0 30 .................................... AACACGCGCAATCCCCCTTGCACGGTATTC 1519 36 100.0 30 .................................... CAAAAACTTTTTAGGGGGTCGGAAAAACGA 1585 36 100.0 30 .................................... CCACCGCTTTGCCGCCTTCGTTGAGGTCGA 1651 36 100.0 30 .................................... GAAGGCGTGCTGGCCGTTAATGCCCGTTTC 1717 36 100.0 30 .................................... AGATGCCCGTTGGATAAAGAAAAACGGCCT 1783 36 100.0 30 .................................... AGCGGCATAGAAGAAGGCGAACGGGCTGTT 1849 36 100.0 30 .................................... TTTATGCCTGAATTCAACGCATCTTCGTAA 1915 36 100.0 30 .................................... TTGGTTTGCATGGAGTAAAACTGTACAACT 1981 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 31 36 99.9 30 GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : TACCCCAACGGGAAATCCTTATTCTATAAGGATTTCCCGTTTTATTTAGTCTGAAAAAATGGGCTTAAAATAACAATAATTGGTCTGAATTGACCTTTTTTTCTTGGGTTTTCAGCTCGCCCAACAGCAGTTTCATGGCGGCATATTGCTTTTCTGTTATCTCCAAACAGCGGATTGAGCCTTCTTGCGGAAGGTTTGCACATAGTCTATTGTGGTGTTTTTGCAACGAATCGCGGCCTTTGACGATACGGCTGTATACGGAAAGTTGCAGCATTTGGTATCCGTCTTTTAATAAAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTTGCCGCCGTGATAACCGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATGCTTTCAATGGTAGGATTTCAGGCAGTTTCAGTTGTTTGGCGTTTTTATCAGTTACGCCGGCTTGAAATGACGAAACCATTTTGTCGATGGCAGCCAAGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCATTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //