Array 1 41836-38487 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPV010000001.1 Acetivibrio sp. MSJd-27 L-6_ctg001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 41835 33 97.0 34 ................................A TGCCTGTGTCCCCCGGAAGCTATGCGGTGGATTA 41768 33 97.0 35 ................................A TAGCCACTCCCCATGTACAACCTCCGCCACATCAG 41700 33 97.0 33 ................................A ATATTCTTTTGTTTCATAATCCAGATTTGCTTT 41634 33 97.0 34 ................................A GTTCTGACATATTCCGGCCAGTTGATTTCAATTT 41567 33 97.0 33 ................................A TCGTCAGTCTCATCCAAATCCACATGCAAGCCG 41501 33 97.0 34 ................................A GGAAATCTGCCGATTGGAAAACAATGATGTGCGA 41434 33 97.0 35 ................................A ATCAGAGATAGTATTAATTTATTTATCTGAATTGG 41366 33 97.0 36 ................................A TTTTTCCGGGTATATCCTTATTATGATTTATACCGG 41297 33 97.0 33 ................................A TCTCCCTAAGAGATAATCAACACTTACATTAAA 41231 33 97.0 35 ................................A AATGAAAACACTTATCTGTTATTTTACAGTTATGA 41163 33 97.0 34 ................................A CTTTTTTGTGGATAGATATTGTACTACCATCAAA 41096 33 97.0 35 ................................A TGCCCGCGTCATCACAATTGCTTTGGTATAAAATG 41028 33 97.0 35 ................................A GGTTCGTTCTGGTAAAACATATATCAGCCTGATAT 40960 33 97.0 34 ................................A AAATCGGGCAGAACCGGGCAAACGCTTTGATGCA 40893 33 97.0 34 ................................A AGACCGATACGATAAATCAATGCCTTGTGTATGC 40826 33 97.0 34 ................................A ATCTGCCGTCATATAGGTTGTTTCATCCATCATT 40759 33 97.0 33 ................................A AACTTTACTTAGGGAACAAGTCTCATTATCCAA 40693 33 97.0 35 ................................A TGGTTGTTTTTGGTATAATTAATCGAGGTGATTTA 40625 33 97.0 37 ................................A CAATAGAAAAAGCCCCCACAGCTATAAAACTGTGAGG 40555 33 97.0 35 ................................A CTGCAAGCGATAAGCAATCAATGTTGACGATTTGC 40487 33 97.0 36 ................................A TCCTTGACAGATTATACAGGCGGTCATCCTTCCCGT 40418 33 97.0 34 ................................A CCTCCGCTTTTGCTTGTGTTGCAAAACCGTGAGA 40351 33 97.0 33 ................................A CAATGTTTATCGGCTTCTATTTGTGTTAATTCA 40285 33 97.0 33 ................................A AGTTTAAAGGACGTCACTTTGCTTACTCCGGGC 40219 33 100.0 35 ................................. ACCGGATTTGGAGGAACAGAAAAAGCAAGCCATGA 40151 33 100.0 35 ................................. ATTTTTAAGGATGGCATTAAAAGAGGATTTTCCAA 40083 33 100.0 36 ................................. CTCTGTCTGGTTGTCGGATGAGTATCTTGCGTATAT 40014 33 100.0 37 ................................. GCTGTTAGCTCTAATAACAGCAATAATCGCTTACAAG 39944 33 100.0 35 ................................. TGCCTTGTACCTTCCCAATCTCTGTTTCTCCAAAG 39876 33 100.0 36 ................................. AGAGAAACCAATGAAAAATATCTCGAAAAAAGTAAA 39807 33 100.0 35 ................................. GGTATGGGTATCCAATGAGTGACACGCATGCCTTC 39739 33 100.0 35 ................................. TGCAAGGAATGTATTCGCCATCGAACGGAAAATAA 39671 33 100.0 34 ................................. CAGTCGTCCGGTATGTCAAAGGGGTCTATCACAT 39604 33 100.0 36 ................................. ACAATGAAGATTGTATGATTGGCATGAAAGAGTTTC 39535 33 100.0 34 ................................. CAGAAGATAAATATGGAGGAAAACTTGCTATTAT 39468 33 100.0 36 ................................. AGAAAGAGATATCTAAGACGGAGCAAGAGTACAAGT 39399 33 100.0 37 ................................. GTTATGAGTTATAATGCGTCTGACATCGCTAAATGTG 39329 33 100.0 35 ................................. CGATGGTTACAGATTTTGCAACACAAACTGTCTTA 39261 33 100.0 35 ................................. CAAAACGTCCTCAATGCTCATACTGTGATTTGTTG 39193 33 100.0 34 ................................. ATTTTTGCAAAAAGGAAACAACGGGAAAGTTGAT 39126 33 100.0 36 ................................. GATGCGCTTTATGCCAAACCCGGAATTCTGCAATGC 39057 33 100.0 35 ................................. TTCCACACATCTTTTTGATCATAGCGCGGATGGAG 38989 33 100.0 33 ................................. ACAAGCAAATCGTCCGAATCGAGCGGGATACCG 38923 33 100.0 33 ................................. CCATAGTTAAAATCCGAAAAATAAATGATTTGC 38857 33 100.0 35 ................................. TGATGGAGATTTGCTGTCATACATCGGAGAAACAT 38789 33 100.0 33 ................................. GGAGGAATTATCATATCCTCCGAAACCGATTTT 38723 33 100.0 35 ................................. ATCTTTTGACGGTACAGGGGCTTGTCTGTTATTAT 38655 33 100.0 35 ................................. CTGTTTATAACAACACATGACACCACCTCCTTCTG 38587 33 100.0 35 ................................. TTAGCGTAATCAAAATCTTTGATCGTTGCCGCTTG 38519 32 90.9 0 ......................C.....-.T.. | T [38495] ========== ====== ====== ====== ================================= ===================================== ================== 50 33 98.4 35 GTCACGCCTCGCATGAGGCGTGTGGATTGAAAT # Left flank : TGATCGATCCGCAGTCGGATAGTCTTCGCTTTTATTATCTCGGAAACCGGTACCAGACGAAGGTGGAGCATATTGGCAGCAAACCTTCCTTTGATGTAACGGATCCGTTGATACTTTAAAGAAACGGTAGTGTCCGATGGGAACTTGAAGGAAAAGATCACGGACATCCTACGGCGGCGCATTCTACCTTTTCAAAACATGGAATGGTGAGGGGAAATCCTCCATATTGAAACGTTTTCTATGAAAAATATGGCAAAACTGACTGTCGACTGATTTTATCCAATTCACTTAACACACTCCGAGAAAACCCTTGTATGATTGTGCGAACCGGAAGCACACAGAAAAATGCCGGAGGTTTCGCACCGAAAATGAAAAGAAAAACGCAGAAAATCGCATACTTATGGTTCAAAAAATGCAATAAAATAACATATTGAAATATTTACAAATTGATTTTTATATATTTTCAATAAAAATCAGGGTGAAATTTGTATATATTTGCT # Right flank : TACTTTTGCAAACCAGAAAAACATACATTATTTAACTGATTGAAATATAATAAAATAAAAAAGAATTGCATGGAAAAAATATCTTGATTTTAGAAAAATATTGAAGTATAATTAATTTCATTGTGTATAAGCAGAAACAGAAAAAATAAAGAACATGCCGATTGACGGAGGGGCACGAATGCTGCGAAAAAATCATAACATTGTAAAGACGATCCATTTGGTAAGCAATAGGCTGGGTAACAAAGATTACTCCTGTTCTTTTTTAGGGTACCAACCGCCAAAGGAGAGTGCAAACCATAGATATATCAAAAAAGTCAAAAAGGTGTTGGAAAAGATAGTTGATCATTTGGCCATTCAATATGAGGTATCAAATTATTATATATGCATGAACCAAGGAGTCAGCTTGTGGGCTGCTGAGAGCGTACATGATCTGTGCAGCCAATATGTATTCAATTTGACTGCCGTGCTTCCTTATCCCGATCATGAAAAGAAATGGACAG # Questionable array : NO Score: 8.91 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.73, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTCGCATGAGGCGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCGCGCATGCGGCGTGTGGATTGAAAC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [81.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 24384-23275 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPV010000013.1 Acetivibrio sp. MSJd-27 L-6_ctg013, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 24383 33 100.0 35 ................................. TCTGCAACATTGTATTTGGCTCCTATGGACGCCGC 24315 33 100.0 34 ................................. ATTTTTTTGCGTATGCTTTCCCACATCTTGCGAT 24248 33 100.0 34 ................................. TCTGCTTAACTCTTCAAAATTTGATACGCGAACG 24181 33 100.0 33 ................................. CAAAACGATGCGGCACATGCGATTATTGCAGGG 24115 33 100.0 34 ................................. ATCATATCACCGGTTCTCGGATCGGGATGGGGAA 24048 33 100.0 35 ................................. AACAACAATGTTGTCATATCCCTGTATGTACTTAA 23980 33 100.0 34 ................................. GTCACTGTCACATAATCAGCTATGGTACCTTCAG 23913 33 100.0 35 ................................. GGTTCGTTTCCATATCCGAAGCGGTTGTTTTTCCG 23845 33 100.0 36 ................................. GGAGAAAGGTCAATGATTCCAGTCAGGCAAGGTGTT 23776 33 100.0 34 ................................. AGCGAAACCCCATTCTGATTTTTGTAGGCAAGCA 23709 33 100.0 35 ................................. CCTTGAACCAGTGATGCGGATTGTCTGGATTGGTT 23641 33 100.0 34 ................................. GGTTTGATGGGGAGGACGAAGAAATGATCGTTAA 23574 33 100.0 33 ................................. CCATTGTGGTAAGATAGTAGTCTCCTTCCTGCG 23508 33 100.0 36 ................................. ATATTGCTTCCGTCTGACCAAAATGGGTCATTGCAT 23439 33 100.0 33 ................................. TGTCTATGGATGTGCTCTATGGTTACAAAACCA 23373 33 100.0 33 ................................. CTCATATGTTTTGCGCGATAAGATTTCTTCGCA 23307 33 93.9 0 ...................A............A | ========== ====== ====== ====== ================================= ==================================== ================== 17 33 99.6 34 GTCACGCCTCGCATGAGGCGTGTGGATTGAAAT # Left flank : CGTCCCCAGCGGTATACAAAGGAATTTATTGATGCTTCCGATTCCTTTTCTTTGTCCTTTTTGGACGGAGCGTACAAGGAAAAGCTCAGTTATCTGGGGTCTGTTTCGGGACGAGATGAGAAGAAAATTTCAAAAACAGGGCTGACTGTGGCAGAGGAGAACGAAATTCCCTATTTTGCAGAGGCAGATACCGTGTTGATCTGCAAAAAGCTTTATCAGCAGGAGTATCAAAAGGAATGCTTTTTGGATTCGTCCATCTGTGAGCGTTGGTATCCAAATAGTGATTATCACACGATGTATGTGGCGGAGATTGAAAAGGTTCTTATCGTTTGAAAAGCTGGTGCGAACCTTAAGTGAACATGAGGTTACAGGAGGATTCGCACTGATTTTCTTACAAAAATACAAGAGAATTTTTAACAAAGCAGTGCTTTTTATCATTTTATACTGACTTTTTTGGTATTTTTGCACAGAGCAGAGTAGAAAATTTGTGTGTTTTTGCT # Right flank : CTCAAAAAATCGGTCATTATTGCATATGATAAAGACACGCCTTGCACAAGACGTGTGGAAAGGCAGGAGAAAAATCTTTGAAACAGACAGTTCTGATTACCGGCGCTTCCCGCGGAATTGGCGCGGCTGCCGCAAAAAGATTTGCACAGGATGGCTGTCGTCTGATTCTAAATTACCAGAAAAATGAAGAAAAAATAAGAGCACTGAGGGAATCACTGAAGACGGAAGTGCTTCTTTGCCGGGCGGATATCTCAAAAGCAAGGGATGTGGAGCATATGGTACAGAAGGCTCTGAATGCTTTTGGAAAAATCGATGTGCTGATCAATAATGCGGGCATTGCGGAACAGAAACTGTTCTCCGATATTACAGAGGAAGACTGGGATAGGATGTTTGATGTCAATGTCAAGGGGATGTATCTGGTGACGAAAGCTGTTCTGCCCGGCATGATTCATGAAAAAAAGGGTAAGATTGTAAACATATCCTCTATCTGGGGCATGACA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACGCCTCGCATGAGGCGTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : NA //