Array 1 1233-167 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQDC01000044.1 Shigella boydii strain ECFood+03 NODE_142_length_1460_cov_159.877_ID_283.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1232 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1171 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 1110 29 100.0 32 ............................. CTATTTTTACAGCGAGTTTTGCAACAAATTTT 1049 29 100.0 32 ............................. AAATTAATTTTGAAACGGGTGTTGATGGTGAG 988 29 100.0 32 ............................. CGCCGCATTAATATTGATGACCAATATTCATT 927 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 866 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 805 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 744 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 683 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 622 29 100.0 32 ............................. CCATGACTATAAAAGCTTATATTTTGATAAAT 561 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 500 29 100.0 32 ............................. GCGTCCGTCAAAGAGGAAGCCAAAGCCATGCA 439 29 100.0 32 ............................. GCGACCACGCAGAGCGGCGACAACCTGACGTT 378 29 100.0 32 ............................. CTATAGCAGCACTCCACCAGCTCGAGCAGCAG 317 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 256 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 195 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACCTGGCACGGCTGGGACGGAAGTCGCTGTCGTTCTCAAAATCGGTGGAGCTGCATGACAAAGTCATCGGGCATTATCTGAACATAAAACACTATCAATAAGTTGGAGTCATTACCTGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAG # Right flank : GTAGGTAAATCACAGCTATTTGATAAGGGCGTGTGGGTAGTGACTCCAACTTACTGATAGTGTTTTATGTTCAGATAATGCCCGATGACCTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGTGACTTCCGTCCCAGCCTTGCCAGATGTTGTCTCAGATTCAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95445-94257 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQDC01000069.1 Shigella boydii strain ECFood+03 NODE_10_length_98483_cov_71.28_ID_19.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95444 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 95383 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 95322 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 95261 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 95200 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 95139 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 95078 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 95017 29 100.0 32 ............................. GGCGAGTCCGTCAGCGGTGCGCCGCTGCAACA 94956 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 94895 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 94834 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 94773 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 94712 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 94651 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 94590 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 94529 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 94468 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 94407 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 94346 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 94285 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.5 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //