Array 1 66-623 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL830937.1 Phascolarctobacterium succinatutens YIT 12067 Scfld353, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 66 35 100.0 37 ................................... CGAAGTCTTTTCTTTATAGTAGCGTTTTTGTTCTTTG 138 35 100.0 37 ................................... GCAAATGTATCGCCGCTAATAATGAGAGGAGTGTATA 210 33 80.0 0 ............................NNNNN-- - Deletion [241] 243 35 85.7 34 NNNNN.............................. CAGCGTTTATTAATGATGCTGGCTATCTGACACA 312 35 100.0 33 ................................... CAAATGGGACGGTGAAACGACGATGAGCCTTAT 380 35 100.0 32 ................................... GCGCTGGCTAGTGACGATACGGATGCGGCTGA 447 35 100.0 35 ................................... TTGAAATGCAGCGTAAAGACTATGCTCTGAANNNN 517 35 82.9 37 NNNNNN............................. TACTAATAGACTTGTGTAAACTTGCAGGACATCAACC 589 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 9 35 94.3 31 GTTTCCGTCCCCTAATTTGGGGTTATCTCTGAAAT # Left flank : GTCCCCTAATTTGGGGTTATCTCTGAAATATAGTAGCGAGGAATCTTATACTTAGCTCCGTTAGTG # Right flank : GAGAAGTACAAATTTGTATTATGCAAGCTGT # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.71, 5:0, 6:0.25, 7:-0.38, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCGTCCCCTAATTTGGGGTTATCTCTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.30,-7.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [6-6] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.27,0 Confidence: MEDIUM] # Array family : NA // Array 1 1235-301 **** Predicted by CRISPRDetect 2.4 *** >NZ_GL830936.1 Phascolarctobacterium succinatutens YIT 12067 Scfld344, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================= ================== 1234 36 100.0 31 .................................... TCCAGCGTGTAACGGTTCTCTGACAGCTTAT 1167 36 100.0 30 .................................... CTTTGCTTTGTTGACTATAGTATACACTAT 1101 36 100.0 30 .................................... TATCGTGATCTGTCTGGCAAATCGCTTGAA 1035 36 83.3 32 ..............................NNNNNN NNNNATAAATTGGTTACGTCGATAACCATGTC 967 36 100.0 30 .................................... ACGCTGATAACTACCGCGCGTGGAGATATT 901 36 83.3 33 ..............................NNNNNN NNNNAAATTTAAACTTATCGGCAGTTTCGGCTT 832 36 100.0 30 .................................... ATAAAGCGACTCTCTAAAGAGCTACAAAAT 766 36 100.0 30 .................................... AAGCTGTGCATTGCTGTTAACGCCCGCAGC 700 36 100.0 30 .................................... GTAAAACGGTGCGTCAAAACCTTTTACAAG 634 36 100.0 30 .................................... GTGTAGACAGCGCGCATCTCATTAGCGCGG 568 36 100.0 30 .................................... TGCGGTCAGTGTCTTGGCTGCCGTTTGGAT 502 36 83.3 0 ..............................NNNNNN - Deletion [467] 466 34 83.3 30 --NNNN.............................. GTCGGCCATATCAACGCCGATATCTTTAGC 402 36 100.0 30 .................................... ACTCTATTCTGCCTGCCCAGTATATCAACC 336 36 72.2 0 ..................A.CT.TAC.T..A.A..G | ========== ====== ====== ====== ==================================== ================================= ================== 15 36 93.7 28 ATTATACCATACCAAGAACCACCGGGGAACTACAAC # Left flank : TTCAAAGCTTCAGCCGCTGTTGCCAAAAAACATCAAAGGAACTGCTGCTTCCTACCTTAGTAGCCTTGAGGCAGCACACATATGAATAAATTTATGAGAATGCTGGTATTTTTTGATATCCCTGTAAAAACTAAAAGAGAAAGACGCATTGCTACAGCGTTTCGTAATTTTTTGCTAAAGGACGGCTACCATATGGTACAATATTCGGTTTATGCTCGTGTCTGCAACGGCATGGATGCAGTACAAAAACATCGCAGCAGATTAAATACAGCTTTACCGGAAAACGGCTCTGTCCGTTTATTAGTCATAACAGAAAAGCAATATGAAACTATTGAAATATTGGTTGGCAACTATCACGAAGATGATACACCATTTGTCTGCGAGCAGATTTCAATTTTCTAAAAAACTAATTTTACTGCTCATTTAATGCTAGTTACATTATTTTTTCTCATACCAAAAAGCCCTTAAAGCCAAGCTTTAAGGGCTTTTTGCAGTGGTCT # Right flank : GAACTTCTTTTAAACAAACTTAACGTTGCTTGACATTCCCCTGTATTTCAAATACACTTAAACTAAGTTCTTCAAAACCGCAAGTAAGCCTATGCATCAAGCTCATTTACCTGCGGACAATTAAATAAGCAGTATATCCTGCAGATGCATCTTTTCTGCAGAAGCTTAAGCAAGGCCATTTATTTTTATCTGGTACATTCTAAGAGTAGTACAAACTGACGATTTTTTATCGTCAGGGTACTACTCTTTTTTGTTTTCAGGCGCTTTGCAACTGCTTATGTATTTTTTTATTCACTTGTGT # Questionable array : NO Score: 2.74 # Score Detail : 1:0, 2:0, 3:0, 4:0.69, 5:0, 6:0.25, 7:-0.20, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCATACCAAGAACCACCGGGGAACTACAAC # Alternate repeat : ATTATACCATACCAAGAACCACCGGGGAACNNNNNN # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [21-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA //