Array 1 276421-275864 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROV010000003.1 Listeria booriae strain FSL L7-1816 NODE_3_length_607079_cov_36.405954, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 276420 31 96.8 35 ..............................G TCAACAAGCGGCTATTCAAACGGCAACTAACAAAG 276354 31 100.0 34 ............................... AAAATAATTCTGGCAGTTCTCAAAAGCCAAGCAA 276289 31 100.0 35 ............................... CTAAAACTATTTCGTTTACAGCTCGTTTTGAGGCT 276223 31 100.0 34 ............................... TATATTTACACTAAGCAGAGATACAGAGGTTACC 276158 31 96.8 35 ..............................T TCTTTCCATGATTTGTATGGAAATCCTGGTTCATA 276092 31 100.0 35 ............................... GTACAATTTCGAGGCAAAACATACGTCTCTTTTGC 276026 31 100.0 35 ............................... TAGTAAAAGGAAATATTGGCGTGGACGGGATGGTC 275960 31 100.0 35 ............................... AGGACAAAGGCCAAACGGTACACTTTACAAACTCG 275894 31 77.4 0 .......C.C.....C.A.....CA.....C | ========== ====== ====== ====== =============================== =================================== ================== 9 31 96.8 35 GTTTTTATCTAAGTAATGTGAAATGTAAATA # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTAACGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCGCTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAAGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGGTAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGGCATCGGCAGATTTTTGTTAAGCATTGGTGTGATTGGGTTCAAGGCTGTTTTTGAAGTTCGGCTTGTAAGGTTTGAGAGCGAGAATTCAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : AATTTGTTTAGCTATGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCTTCACAAAAAATCCTCACGATAATCTTTAACATACTGATCAAACGAAGTAGCCTCACGTTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCCCGTTTTATTATTGTTGCGCGAAATCGTAATAGAGACGGCTTGCTGTATGTTATTTTTCTCCCTAAAATGGCTGTCATCTTCTCTGCCACTTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTTATCAGGCAAATAGCAGCGATCTCCCCAATGTCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATATC # Questionable array : NO Score: 3.10 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 204467-205630 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROV010000001.1 Listeria booriae strain FSL L7-1816 NODE_1_length_1330556_cov_30.408326, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================================== ================== 204467 30 100.0 37 .............................. TGGTACGGTCGCCTGTGCCGTAAATATATGCAAGGAA 204534 30 100.0 35 .............................. AAAAAAGCATTCGTATTATTTATAGTTGAACCTAG 204599 30 100.0 36 .............................. AAGGTTTCGCTGAACATATCTTCATTGATGTACAGT 204665 30 100.0 36 .............................. ATCCCAGGCGCAATCAAAGTTCCTATTGCCGCACCG 204731 30 100.0 34 .............................. AAAGATTATTTGTTACTCATTGATAACATTTCAG 204795 30 100.0 35 .............................. TCATAAAAGCCGCGCTGTACTCTTCGAACGTTTTT 204860 30 100.0 37 .............................. CACCACATTTTCCCGATTGATGAGATACACATCTGCC 204927 30 100.0 36 .............................. CCTTTAAAGTAAATCGCCTGGTATTGCTAATATATC 204993 30 100.0 36 .............................. ACGCCCATATCCATTAATAAACCGCCTACTTTCAAC 205059 30 100.0 34 .............................. TACAAAGAAGATCAACAAGATGAAACTTATTTGG 205123 30 100.0 37 .............................. CTAATTTGTTCTTTACGCGTATTGTTTTCTGGTCGCA 205190 30 100.0 36 .............................. GGAAGCAAGTGGAACATGGCGAAGTGGATCATCGAC 205256 30 100.0 35 .............................. CACCGAAATTATCGACATCAAAGGCGTTAAAACCG 205321 30 100.0 36 .............................. TTAAAAATAGCGCTACTCAGCGCTTTCGTTTTTTGC 205387 30 100.0 35 .............................. CCTAATCATACATGGAAAACCTATCTTGACTTTTT 205452 30 100.0 36 .............................. TCTTGATACTCGAAAACGTACTCCGCGTCACGAGAA 205518 30 93.3 54 .................A...........C ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATTGTCTTTATCTGCCGATT 205602 29 73.3 0 ..C.........A....A..-...CC.G.C | ========== ====== ====== ====== ============================== ====================================================== ================== 18 30 98.1 37 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGTTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAATAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGATGGGATGAAAATTCTAAAAATCTGTCGACCGCCGGTAGTGTGGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTCAGGCTGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGCACCT # Right flank : CTAGATTGCTCACAGATGCAGTGTTTCTATCCATTTTTTATAGAATCAATTATCATTTAACAATCCCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCGAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGTGCTAGTATGGCGCGGAATTTGATGGTGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCAACTGATGTGGAGGAGCTTTATTTAGCGGAGGACGGGCTGTTGACTACGCTTCGATCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 139012-139567 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROV010000005.1 Listeria booriae strain FSL L7-1816 NODE_5_length_185325_cov_37.504605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 139012 30 100.0 35 .............................. GCAACTTGCATTTGATTAACAAATTGCGTCTTGGC 139077 30 100.0 36 .............................. AAAAGGCAAAAGTTGGTTCCGCGCCCCAAGTGCGAC 139143 30 100.0 37 .............................. AAGCCTCCAACACATAAATTTGATAATTCCCGTATTT 139210 30 100.0 34 .............................. GCGTCTGAAACTATCCTTTTAATCTCTTCCGATG 139274 30 100.0 37 .............................. TACTCCGGCATTTTTTTTGTGGTCAAACTTGCATAGG 139341 30 93.3 35 T..............A.............. GAGCTTGAGTACGGGAAGGGTAGCGGTGTATTTGG 139406 30 96.7 36 ...............A.............. TCGTCTGGAATTTCCGATAAGCTTGTCAAAATATTA 139472 30 96.7 36 ...............A.............. TTTTTTGTATGCTCCAGTTTGGCTGTTCATTTTCAT 139538 30 80.0 0 ...............A.A..C...A...TC | ========== ====== ====== ====== ============================== ===================================== ================== 9 30 96.3 36 GTTTTTATCTAAGTATTGTGTAATGTAAAT # Left flank : GACGCTGAGCGAAACATCAAACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTCGCCGGCACAACCAAGTCAGTGTTTGAAGATTTCCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTTTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGATAAGGGATTAGGATGATTTTCGAAAAGTAGAAAAAAATAAAAAGGCGCAAAAAAGACAAATTTTTTGGAGGTCGACAGATTTGGCGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGACACCAAATGACTATGGAAAAATTAAAACTACGAGTCACCATAGACAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACAGATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGCTTCTTTAACAAATACAACGGTATAGACGCTCATCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCATCCCATAAAAAGGATACAAATACTAAAACTACGAGAACC # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:0, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTATTGTGTAATGTAAAT # Alternate repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 142814-143496 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAROV010000005.1 Listeria booriae strain FSL L7-1816 NODE_5_length_185325_cov_37.504605, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 142814 30 100.0 37 .............................. AATCATCGAGGTAATCTCGGACAGGATGGTAAGCTCG 142881 30 100.0 35 .............................. TTCGCCGGGTTACCACTAAGCGTGTTAACATCAAC 142946 30 100.0 34 .............................. AAACGTCCAAATCGAGCTTCTTTCACATCTTCCG 143010 30 100.0 35 .............................. TATTACGCTTTGTTTCTACTTTTTGCAAAGCTTGA 143075 30 100.0 37 .............................. GCCAAACCTGCAGATGCACCGATACCTAACAAAATAC 143142 30 100.0 36 .............................. TTGTCAAATTCTAAGTAATATACAATGTCGCTATGG 143208 30 100.0 36 .............................. AGATATGTCCTGTCAGCTCTGTATGCATTCAGTGAT 143274 30 96.7 35 ....C......................... CAAAATCTCCCTCAAAAGTGCGATAAGTTATGATT A [143284] 143340 30 96.7 35 .................A............ CCGAACAAAGTTGCTGGGGCAACACTAGTAGGGAA 143405 30 96.7 33 ................C............. GTCACTGTATCCCCTGATTTTTTTACGCGTCCA 143468 29 76.7 0 ................-.A.G...CC..CA | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.0 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAAACTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAGTTTTGAAGTGCTAGATAAAGAACACCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGAAAACCATTCCTGCGAATAGCGCATTGATTGTGCAAGATGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCGAAATAATGGGGGCATCGACAGATTTTTGTTATGTGTTGGTACTAAATAGATTAAGCCTATTTTCGGAGTTTGGATTGTAAGGTTTGAGAGCGGAAATTTAGCATTTTGCTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGTTACCT # Right flank : AAATAAGACATTAGTAAAACGAATTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTATTCTATTGACCTCTATGTTGAAAATTTTTAGCATGCAGTTAACAACGATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGTGCGCTATCTGTCGTATTAAGGATGACCGTTTTCGCGTAATATTTAATAGCTGGTGCAGTAACAGGGATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTATGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCAAGTGTGGTGATAGAACCGGTTGCTACAATTTGATTTGCAAGAGTGACAGTTTTTGTGTCCAGTACTCTACCATTGGCATCATATGCAGTTAATGTGATATTGTCTGTATTTTTTAAAATCACTCGTTTTGCATAATA # Questionable array : NO Score: 3.11 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //