Array 1 216699-215875 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAT01000001.1 Salmonella enterica subsp. enterica serovar Alachua strain 2010K-0732 NODE_1_length_656507_cov_4.11885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216698 29 100.0 32 ............................. ACGAGTCGCAGGAGGGCGAAACCATATTATCC 216637 29 100.0 32 ............................. ACCCATATCAACGCACCGAAATTACGGACGGC 216576 29 100.0 32 ............................. ACGACTGAATTAAAACCATACGGCGGCTCATA 216515 29 100.0 32 ............................. ACGGGGAGTCAGTCACATCCATTGAGGATGCG 216454 29 100.0 32 ............................. CCTCCAGGATACCCCCACCGATGAAGGTGGGG 216393 29 100.0 32 ............................. CAGTATTTCGGTATGGCTAGCCACAGCGCGAA 216332 29 100.0 32 ............................. AAATCATTCATCATCGCGATAGCGATCGAATC 216271 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 216210 29 100.0 32 ............................. AATGCTTTGGCAAAATCAATTCCCCCAATTGA 216149 29 100.0 32 ............................. TCCGGGCGTACAGATATCATGAGTTCTGACGA 216088 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 216027 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 215965 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 215904 29 96.6 0 A............................ | A [215877] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTACCGCCAGCGATACCAGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGTATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGCGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 234571-232957 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAT01000001.1 Salmonella enterica subsp. enterica serovar Alachua strain 2010K-0732 NODE_1_length_656507_cov_4.11885, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 234570 29 96.6 32 ............................A TTACCGTATGACAAGCGGGTAAAAAAAAGCCC 234509 29 100.0 32 ............................. AAAACATGCATATGGGCTGGTAACGGCTTTGT 234448 29 100.0 32 ............................. TCGTGACCATGAATAATGACGTCATCACCGCG 234387 29 100.0 32 ............................. TGCACATTATTTCAGGGCGAAATCTCGTCCGC 234326 29 100.0 32 ............................. ATGCTGGCGCATCATGTAAAATCGCGTGCCAA 234265 29 100.0 32 ............................. TCGGTTATTGAGGACGTCACCGACGACGCACT 234204 29 100.0 32 ............................. ACATTGAACCTCCTCAATAGGGCAGGTCGTTC 234143 29 100.0 32 ............................. GAACGACGACCAGATTAACGCCGGTCTGGAAA 234082 29 100.0 32 ............................. GCTCAAAACTCGGATGGTATAGGCGTGGCGCA 234021 29 100.0 32 ............................. GCGCGGCATAACAGCACGGGCACGCCGCCAGG 233960 29 96.6 32 .................A........... ATAAATTATCGGGAAATCATAATCAGCGCCGC 233899 29 100.0 32 ............................. TCGAGTTCTGGCATGTCAGACTGACGTATCGC 233838 29 100.0 32 ............................. CCATTTTTGATCATCTCCTCCAGCCTGCTGAG 233777 29 96.6 32 .............T............... GCGCAGTATCAGGGAACGGCCGTTATTACGGT 233716 29 100.0 32 ............................. GCAATGGCAAGTAGTTCTCAGATGAAAGTCAG 233655 29 100.0 32 ............................. CCAACGGACGAGATCCTGGACTGCGACGGGCT 233594 29 100.0 32 ............................. GAAAGATTCACATTTAAAACTAGTGATTTTTC 233533 29 100.0 32 ............................. CGGGCGTTAACGTCCGAAGAGGTTCGCGAAAC 233472 29 100.0 32 ............................. TCTGGTGATTTGAAAGACTGGCACGCAGAGGA 233411 29 100.0 32 ............................. AAGATACAAAAAAGTACACGTAAAGTGCACGT 233350 29 100.0 32 ............................. CCATAAGAGCATCCCCGCCATCCGGAGGGGAA 233289 29 100.0 32 ............................. AAAAAAATGCGATCGGTACTCAACCCGGCCAC 233228 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 233167 29 100.0 32 ............................. TGGTCGCAGCCTGGCCTGTTGCCGTAGAATCG 233106 29 96.6 32 .........T................... AGTTACTGATGCAGACTGCGGATCTTAATCGG 233045 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 232984 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCTAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //