Array 1 439629-436365 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP029001.1 Trueperella pyogenes strain TP4479 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 439628 29 96.6 33 ............................A CATGTGGCACCACCAACCTCCACTGGCGCCACA 439566 29 96.6 32 ............................G TGGCGTATTCGTATAGGCCGACGATTTGTAGG 439505 29 96.6 32 ............................T TACCCATTTGGCGAGCTGGCCGCGGTCTGTGG 439444 29 100.0 32 ............................. ATTGGTGACGCGGACAGTGCGCCCCACAGTAG 439383 29 96.6 32 ............................G CCCAATCTGCTTACCCGCACCAGCCAGACGCA 439322 29 100.0 32 ............................. CAACCTACCCTACCGGGACACCCACGAAACAT 439261 29 100.0 32 ............................. ATTTTTGAGGTCAGCAGGAGCAACAAAATCAG 439200 29 96.6 32 ............................G TAGTTTTGCCATCCGGATCATTGGCAAAAAGG 439139 29 96.6 32 ............................T AATTGGTGCTCGTCGGAGATGTAGCGCGTGAT 439078 29 96.6 32 ............................G GTCTCGAAGGTGGTGCTGTACGCGGTCGGCTT 439017 29 100.0 32 ............................. CAATCCCGATGCCTGCGGGCTGGAAACAAGAC 438956 29 96.6 32 ............................G CCCCAGTAGGTGAAGCGGCTGAGTCGGCACGT 438895 29 96.6 32 ............................G CCCGTACTGCTTTGATGGCATGCCGTTCGCGT 438834 29 96.6 32 ............................G TAGAAAGATCCTTGGCCGTAGAGAAGTCGGTG 438773 29 100.0 32 ............................. ACGCCGGCGCCTCACGCCGTGCCGACATCGGC 438712 29 100.0 32 ............................. ACGGTTCTTCTCCTTGCCAGTAGGCTTCGTAC 438651 29 100.0 32 ............................. CCCGTACACCAAGTTCGCGGCCTACGCCCTCT 438590 29 96.6 32 ............................G TCTGTTACATGGGTTGCGGCGTATTCGCTTGC 438529 29 100.0 32 ............................. GCCTTGGTGGATGCCGGGATTTCCCTAGGTGG 438468 29 100.0 32 ............................. TGCTCGACGTCAGCGCGGATATTTACCGCGAT 438407 29 100.0 32 ............................. GATCATTCAGCGTTAATGTGGCAGCCAGGGTG 438346 29 100.0 32 ............................. CGCGTGGGCGGGTTCAACCGTTCCAGAGGCTT 438285 29 100.0 32 ............................. AATGACCACGACGATCGGGTTACAACCTACAA 438224 29 100.0 32 ............................. CTGCCCAACGGGCAAACCCGTGACGTGTACGC 438163 29 96.6 32 ............................T GATGAGCTTGCCCTTTACGTGTGGCTGCTCCT 438102 29 100.0 32 ............................. TCGTCTAGGGTGAAAACCCCTGCCTTCGCAGG 438041 29 96.6 32 ............................G GAGGGAAAGATGGACCTTTCGGAATGCGTCGC 437980 29 100.0 32 ............................. CGCGCTCGGCGCGCTCGTTACCGTTCTCACCG 437919 29 100.0 32 ............................. AGCGCCCAGCCCACCGACCACACGCCGGAAAC 437858 29 96.6 32 ............................G ACATGGTTTTGCACGGTGGTCGGCATGGTATC 437797 29 96.6 32 ............................G CTTGGCTCCTCGCGCCAGAGCATGCATCACAA 437736 29 100.0 32 ............................. CGCGAATGAAAACCACGATACGTACCCTCGCT 437675 29 96.6 32 ............................G CCGAAAAGGAGCCGCCCGGCTGGCAAGACCAC 437614 29 96.6 32 ............................G TCAAAGGGGCGTTCTCCGCCAATAACCCGTCA 437553 29 100.0 32 ............................. CGGTAGTGGCCGGGCAGGCTCACGCCGACCCG 437492 29 100.0 32 ............................. AGTGCCACGCACTACACGGCCGCCACCATCGA 437431 29 100.0 32 ............................. GCGACCTTGATCCCGCCACCCGAATAGGACAG 437370 29 93.1 32 ........T...................G CACGAGGGGTTTAGGAACGCTGTCAATACAGC 437309 29 96.6 32 ............................T GGCACAATTTGGCCACGGTTGAGCACACCGGC 437248 29 96.6 32 ............................G CGTGTGACGGCACAGATCAAGGCCGATACCGG 437187 29 96.6 32 ............................T TTTGGGTATGGTGGCCGCCAGTGGGCGGAGTT 437126 29 96.6 32 ............................G AGCACGACGTCCTATATCTGATCACCGAATAA 437065 29 96.6 32 ............................G CCATGCCGGGTATCGTGACGGTGGTGGATGAC 437004 29 100.0 32 ............................. GTCATCTCGCATATCGAGGCGACGAACCACGA 436943 29 96.6 32 ............................G TTCGCGGATCTTACGAGCGGTTTGCGTATGTC 436882 29 96.6 32 ............................T TCCACCGAAGAGAGTCCCACACGGCGAGGTCT 436821 29 100.0 32 ............................. GGGATCGAGCAGACGATTACCGCGACCGGCGT 436760 29 96.6 32 ............................G CCGGGCCTGCAGTGGTGGCGCGATATAACCGG 436699 29 100.0 32 ............................. GGTTTCTACCCACGTTTTAACTACTTCAAGTG 436638 29 100.0 32 ............................. ACGCACATGTGTGAAATGTAGCGGCGGGCGTG 436577 29 93.1 32 .............G..............G CCTCATACAATGCGCCGATCCTGCCTTTCAGT 436516 29 96.6 32 ............................G ACGCGGGAAAGCTCTTGGCCTCGTGGCCTGGT 436455 29 100.0 32 ............................. GCACACGTGTCGTAAGTGTCGCGGGTCGCGCA 436394 29 93.1 0 ..........................T.A | C [436369] ========== ====== ====== ====== ============================= ================================= ================== 54 29 98.0 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCCGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTGTCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAAACATCCATTGGGCCATTGTCAGGTAGGCCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAGTGCTGGTCAGCAACT # Right flank : GTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATCGCCAGGCGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCAAGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTCACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.66, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-11.70,-13.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //