Array 1 36-196 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000108.1 Methylocystis parvus OBBP contig108, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ================================== ================== 36 31 100.0 34 ............................... GGTTGCTTATTGGCGGCGTAAAGATGCAGAGCGG 101 31 100.0 34 ............................... GCTTCATATCTTTTGTCGTTCCAGAACTTTCAGG 166 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ================================== ================== 3 31 100.0 34 GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Left flank : GCACGTTAGCCGGCTCAAGCGGTTATGGCGTGCGCG # Right flank : ATCCAAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [20.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57529-57829 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000028.1 Methylocystis parvus OBBP contig028, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 57529 32 100.0 33 ................................ ATGGTTTCCTTCATCACCTCGCCGAGGTGGCGT 57594 32 100.0 37 ................................ GCGTGCGGCGTGAGCGGGACTTCGTAGACGGTCATTG 57663 32 100.0 34 ................................ GCGAGCTTGGCAAGCCGACGTTCAATGACGGGCG 57729 32 100.0 37 ................................ TCAGCGTATTCTGGCGGGTTCTCGGGTTCGTTTGGCT 57798 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 5 32 100.0 36 GTCGTGCCCTTCGCGGGCGCGTGGATCGAAAC # Left flank : TCACGACTTGATTGAGGAGCAGATGACCGACTTCGTCCACATGTTGTCCAGGCCGCTGGACAGAAGATTCTTCATCGCCCGCGAGGGATCTCCGGAAAGCGTCGTGCTCGCGCTCATAAGTGAACTAAAAGCTGAATTATTGGTCCTCGGAACTCATGGCCGCTCGGGACTGGGGCGCGCCATTCTCGGGAGCGTCGCGGAGGCGCTGCTGGCAAGCGCGCCATGCGATGTCCTCGCGGTCAGGGGCTGGTGACGTCGTCGAAACCTGTAGGAGTTTGACGTTTTCGGCAGCCCGCCGTCGACACTCTCTGCCCGAGAGTTCGCGCGAACCGGGAGCGCGCTCATATTTCCAGGGCGGTTCGCGCGACTGATAAGCCGTCGCTTTTCAAGCGAAAGCCCCGCGCCTGCTAAGTGTCTGCGGGCAGAGCGCGCCGCGCCGACAAGAGATTCGCGCGACCAGCCCCCTTTCAGCCGCTTAAGCAAGGAGATAAACAAAGGCC # Right flank : CGCTCCCCGAATGCGCGGCCGAATTGGCTATCTTGTCGTGCCCTTCGCGGGCGCGTGGATCG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCCTTCGCGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.10,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [45.0-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.74 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 57780-57482 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000029.1 Methylocystis parvus OBBP contig029, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 57779 32 100.0 35 ................................ GCCGACGTGGATGGCCTGCTCGAAACCGGAAACGA 57712 32 100.0 33 ................................ ATCCCGCCTCTACCGGCGTCACGGCGGAGGTGG 57647 32 100.0 34 ................................ CGCGATCCCCTATCGCGGTCTAGCGCATGTCGAC 57581 32 100.0 36 ................................ GGTCATGACGCCGGCGATCATCATTGCGTCGTCACC 57513 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 5 32 100.0 35 GTCGTGCCCTTCGCGGGCGCGTGGATCGAAAC # Left flank : CGTGGATCGAAACATGATCATGTATGACCCATCTTGGACATATTCT # Right flank : TTCGCCTCGGGCTCCATGCCGTGCATGGCCTCGTGTCACCTTCGGAATGCCCGCACGCAGTCAGTTGCGTTGCCTCCGGAGCGGCCAGCCTTGCGGCCAAATCCACAGGACGCCGCGGTTCGAGCCGATCCCCGCGCTTCGCCGAGGCTGATGAGCGCCGCAATCCGACTGGCAGGGCGATAATGCAGAGCTGAGCGCTCGAAACCGGCTCCGCCAGCTAAATCCACTTTCCAGCGAGTGCAGCAAAGAAAGCCCGGAACGCGGGGAGCCTATGGCGCAAGCTGGTTCAGAATTATCCAAAAAATCGGGCGCTCATCCTACTTCGTAAAGAAAATTGTGCTGGTGGTTCGCCATACCACCTCCTGAACGCGCGAATAAAATGAGCAGAGTCCGAATAGCCGAGCGCAATAGCGACTTCGGCGACCCTAAGGTTCGGGTTTCCGAGCAGTTCGACCGCCTTTTGTCGCCGCCGTCGTTCCGTCAGCTCCTCGAAGCTTGTC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGCCCTTCGCGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCCTCGCGGGCGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.70,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.77 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3-957 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000045.1 Methylocystis parvus OBBP contig045, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 3 31 100.0 34 ............................... GATCGCAGGCGTCGTCACCGTGCAAGGCACGATC 68 31 100.0 35 ............................... GCAATTCAGAAGTTCGAAAAGGCCGAGGGCAAATC 134 31 100.0 35 ............................... GAGGCGACAATCAGATCATCTATCTCGTTGACGCG 200 31 100.0 35 ............................... TCTGATTGGATTGACGCCAGATTGACATATCTGTT 266 31 100.0 34 ............................... AGAGCCGCATTGAGATCAGCGTTGGGACGTCCGG 331 31 100.0 36 ............................... GCGGTCTTCAATGTCAACGATCGTCGCGATTGGGAT 398 31 100.0 37 ............................... TTTGGGCTCGCTGTCGTCATGCAACCAGTCTTCGGAT 466 31 100.0 37 ............................... GGGCGACGCGGAGGCGTTGGAACGTCTTGTGTGACAT 534 31 100.0 35 ............................... GTCTCCAACGATCGCATCCGCAAGATTGATCAGGC 600 31 100.0 34 ............................... CCCAACGGCGCCACAGACACGATCGACGGCGGGA 665 31 100.0 34 ............................... ACTCCTTGGCTGATCCCGATCATCATCGGCTTTT 730 31 100.0 36 ............................... TCGATCTTACGCAGATCATGCTTTGCCGCGATGCAG 797 31 100.0 33 ............................... GTCGCCGCCCTGCTTGTGATAAATCTTCGGCTG 861 29 93.5 37 ...............--.............. GACGCGTCCTTGATCGCCGCATACATTTGGTCGAAGC 927 30 87.1 0 .........C...........C...-A.... | C [933] ========== ====== ====== ====== =============================== ===================================== ================== 15 31 98.7 35 GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Left flank : CGG # Right flank : CATCCGCAACGTCGCGAAGGCCGCTCTCGGCCCGGTCGCGCCCTGCGGAGCGCAGAGCCAAAAGCTTTGCAGTCATCGCGGCTGACGATCGAGGAGACTACCTTCCGCGCCAGCGCAAGTGAGGAGTCGTGTTTGGCAGGTGGGAGAGAACCGGCGTTTTCGCTGCATTCCTACAGCGGCTGCGCGCCACTGAAGCAGCGGCCGCAAAATGCCCGCGCGCTCTTCCAGAATGAGACAAAGCCGCCGGCCTCTATGGTTCCGCCAGCGGCAGGACGAAGCTGAAGATAGTCCCGCCGCCGGGATTGTCCTCGGCCCAGAGCTTTCCATGGTGCGCCTCGATGATCGAGCGCGAGAGCGACAGCCCGACGCCCAAGCCGTGGGGCTTGGTGGTCGTGAACGGCTCGAACAGTTTCTCCTTGATGGCCTGCGGGACGCCGGGGCCGGTGTCGGCCACGTCGGTGCGCATCATGTCGCCCGCGACGAGGCGGGTCGAGACCGTC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 495-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000068.1 Methylocystis parvus OBBP contig068, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 494 31 100.0 34 ............................... GCGCCTTATGTTGACGCTGATCCTCACTGTTATC 429 31 100.0 35 ............................... TCCTATCGTGACAAACCGTTGTCGACGCTGGCGCG 363 31 100.0 34 ............................... GGCGTGTTGCTCACAATCGCGTTTGCGCATGCGA 298 31 100.0 35 ............................... AACGTCTATTCGAAAGATGAAATTCTCGCCGCGAT 232 31 100.0 36 ............................... CAAATATACTGAGCGACTTGCTGGATGGTAGGGCGC 165 31 100.0 35 ............................... CGCCCCTTGGCGCAATCCCCGCCGAGCTACAGCGG 99 31 100.0 35 ............................... CGCTCAATCCGCCTTGGGACCGTCGGGAATGATGG 33 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 8 31 100.0 35 GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Left flank : GACGTTCGAACGTCGGAACCCGGCGGCGCGAAGCGCTTGCGCCGCGTCGCCAAGGCATGCCAGGATTTTGGACAACGCGTGCAATATTCGGTTTTCGAGATCGAAGTCGACCCGGCGCAATGGACGGCGTTGCGGGCGCGCCTCGAAGCCTTGATCGATCCGAAATGCGACAGCCTTCGCTACTATTTTCTCGGCGCGAACTGGCGCCGGCGGGTCGAGCATGTGGGAGCGAAGCCGGCCGCCGATTTCGACGCGCCGCTTATTATTTGAGCCGCCGCGCTCGATGTTGGGCCCAGGCGCTAATTTCCATTTCATTCAAAGCGCGCGAACCGGTAGCGCGCCCTGGAACGCCGCAGGTTTCGCGCAGCGCATAAACTCATATTTCTGCACGACATTTTATTTCGCGGCGCCGAAGCGTCCCGAAATTTGCCGAGATCCAGGGCCGGTTCGCGCAAAACTAGAACTTTCTGGATACGGGCCAAAGAATTAGGATCAAGCCG # Right flank : CTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 565-12 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000094.1 Methylocystis parvus OBBP contig094, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 564 31 100.0 34 ............................... AAATATACGTCAGGCGACTCGATCACTGTGGAGA 499 31 100.0 35 ............................... TCGCCATCACCCATGCCGCCGCGGGCAACGTCATC 433 31 100.0 36 ............................... TATGCCTGTCGGGCTTGGGAAGGAACCTCCGAAAGC 366 31 100.0 33 ............................... ATTCTCAAAGCCTTGAAGTTTTGGGCCCGTCGC 302 31 100.0 34 ............................... GCGTTAGTTACGCGACGTCCCGGTTTCGTGCGGC 237 31 100.0 34 ............................... CGCCATCCGCTCCGCCAAGTGATTTTGATTGGTC 172 31 100.0 34 ............................... TTTACGTAGTGCTGTTCTTGTTTGGCGTAGACCA 107 31 100.0 34 ............................... CCGGCACGTTATTGACGGGGACGCTCGCTTGCAC 42 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ==================================== ================== 9 31 100.0 34 GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Left flank : GCGCATTCCATTGCTTATTGGCGTCGTAAAGAT # Right flank : CGCCTTTAGGTT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.40,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [10.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 17-508 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJTV01000096.1 Methylocystis parvus OBBP contig096, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 17 31 100.0 34 ............................... GTCAATATGCCGGAACTGATGCAGCGCTATCAGT 82 31 100.0 33 ............................... AACCCGCCATAGGGCGATTCCCGCGGTTTCCCG 146 31 100.0 34 ............................... CGCCCAGGCTCCCCCGAACAGGCCGACACGGCGG G [154] 212 31 100.0 35 ............................... GATGTCGCCGGCCGTCGGGACGCCGTCTTCCGGGG 278 31 100.0 35 ............................... TTGTTGAAATTCTTGCCGAGCAGCCGACTGCTGAT 344 31 100.0 37 ............................... GGGACGTGTACCGCATGGAGGATGCGGAGCGGGACGC 412 31 100.0 35 ............................... ACTTGCACGGCGACCAATGGCAGCGCGTCGCTGAG 478 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ===================================== ================== 8 31 100.0 35 GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Left flank : TCAGCGCGAGGCGAAGG # Right flank : CTCATACTCTCGGGGTGCTCGGCCGGCGAGGCGCTGTCGCGCCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCTTCACGGGCGCGTGGATCGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCTCACGGGCGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [8.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //