Array 1 16951-14477 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXHR01000017.1 Riemerella anatipestifer strain CCUG25005 Scaffold17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================================================== ================== 16950 36 94.4 30 .................G........C......... ATCGCTGTATTTCAGGAAAAAGGAAAGCGA 16884 36 72.2 81 ...................TGCT.T.C.T..A.G.A CTCCATTGAAAATACAACAAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACAAACATTTTTTGCATCCGTAGATGAGAAAG 16767 36 69.4 81 ...................TGTTAT.C.T..A.G.A CTCCGCTGAAAACAACAACGAAGCAGTGAGTAAAATGAGAGCAGTCCCAACAGTTTTATTTGGATTGTTCAAGATACGACC 16650 36 69.4 80 ...................TGTTAT.C.T..A.G.A CTCCATTGAAAATACAACGAAGCTGTGAGTAAAATGAGAGCAGTCTCAACACGCCATTGTGCCGATAAAATATAGGCTCT 16534 36 69.4 82 ...................TGTTAC.C.T..A.G.A CTCCGCTGAAAATAACAACAAAGCCGTGAGTTAAACTGAGAGCAGTCCCAACAGTTACTTTTGCGAGCAATAGCCCTGCGAT 16416 36 69.4 81 ...................TGCTAT.C.T..A.G.A CTCCGCTGAAAATACAACAAAGCCCGTGAGTAAACTGAGAGCAGTCCCAACCAGAGCCAAAATTTTAGACTATTGTTATCA 16299 36 69.4 80 ...................TGCTAT.C.T..A.G.A CTCCGCTGAAAATATAACGAAGCGTGAGCTAAACTGAGAGCAGTCCCAACTGATAGAATTTTCGGTTTGCTAAGAGCGGT 16183 36 69.4 81 ...................TGTTAC.C.T..A.G.A CTCCGCTGAAAACACAACAAAGCTGTGAGCTAAAATGAGAGCAGTCCCAACGCAGTAGAGAATTAAACTCGCAAGAATTAG 16066 36 100.0 30 .................................... CTTTCAGCCTATCTTTATTTAAAGCCATTT 16000 36 100.0 30 .................................... GTTCCCTTTATAATTTTCTTCTGCTTCAAT 15934 36 100.0 30 .................................... ACTTACTTTTGATACAATTGAATACGAGTG 15868 36 100.0 30 .................................... CTTTCAGCCTATCTTTATTTAAAGCCATTT 15802 36 100.0 30 .................................... GTTCCCTTTATAATTTTCTTCTGCTTCAAT 15736 36 100.0 30 .................................... ACTTACTTTTGATACAATTGAATACGAGTG 15670 36 100.0 30 .................................... GTTCCCTTTATAATTTTCTTCTGCTTCAAT 15604 36 100.0 29 .................................... TCCTATACTTTGTGCAGCTATTGTTACAG 15538 36 97.2 29 .................G.................. TTTCAACATCAATCTAAGGATAGGTATTT 15472 36 94.4 30 .................G........C......... GTTACTTTGGAGAAATTAGAGCTAGAGGTG 15406 36 69.4 82 A...................GCTAT.C.T..A.G.A CTCCGCTGAAAGCAACAACGAAGCAGTGAGCTAAACTGAGAGCAGTCTCAACAATGGCTCACGACTCGGCGATGGCTTTACT 15288 36 66.7 81 ...................TGTTAC.C.T..ATG.A CTCCGCTGAAAATAACAACAAAGCTGTGAGTAAAATGAGAGCAGTCCCAACGCTACGGTTATCAGTATGTATCTGGAGCTA 15171 35 75.0 81 ...........T....-.....T.T.C.T..A.G.A CTCTGCTGAAAACAACAACAAAGCCGTGAGTAAACTGAGAGCAGTCCCAACAACTCCTTAAGATATTTAAAAGCGTGGCTA 15055 36 97.2 30 ..........................C......... ACGGTTGGGATGATACTGTCACCGCTGGAA 14989 36 97.2 30 ..........................C......... GGTACAAAGATTATAAATCTTCATTGGTGG 14923 36 72.2 73 ...................TGCT.T.C.T..A.G.A CTCTGCTGAAAACTACAACGAAGCCGTGAGCTAAACTGAGAGCAGTCTACACCAGCAAAAGGGACAAAAAGAT 14814 36 69.4 82 .........C.........GCTTA..C.T..A.G.A CTCCGTTGAAACAACAACAAAGCTTGTGAGCTAAACTGAGAGCAGTCCCAACTGACCACCAATATAGCTGTTCTAGCAAAAC T [14795] 14695 35 75.0 82 .....T..........-.....T.T.C.T..A.G.A CTCCACTGAAAACTACAACGAAGCTGTGAGCTAAACTGAGAGCAGTCCCAACGCAATGAAGCCATATATTGATATTGCAGAT 14578 36 91.7 30 ....................A.....C.A....... TAGATGAAAGTGGTAATCTTAACTTTGTTC 14512 36 66.7 0 ...................TGCT.T.C.T.AT.GTT | ========== ====== ====== ====== ==================================== ================================================================================== ================== 28 36 84.1 54 GTTGTGAATACCCTTCAAAATGAGAGTAGTCCCAAC # Left flank : CATTAAAATAGATGGCGACAACCCTAAAAATGGTATTGTCTTTAAAAACTTAGACAATCAAAATGAGGTAAAGCTCTCAGCAGAGCATATTGTGCTTAATGAGCCGTCAAGGTTACTCATTCTCGTTCCTACAGATTTAGAAGCAGGGAACTATGAACTCAGCATCACCACGCAAAGCAGTAAAGGCACTACCTTACTGAAAGAACCACGCACCGAAATACTAAGCACACCTATTACTATTGTGTAGTGTGTTTTTGGCACTTCTAAATAAAGACCGCCCTTCCTTAGTACTAAGGAAGGGCGGTCGCTTTATAAGAGGAAGTTACTTCACTGCCTAAGGCGAAGGCTCTTCTCTCGGTAAGGAGAAGAGCCTTCCCTCGTACGAGGGAACCGACTTCGTCTGTACTAAGGAAGTGAGGTATTTTCTGTAATAGAATCAATAGAAAGCAAAAATCCCTGCTCTGTACCGTACAGAGCAGGGATTTTTTTTGCCCTCAGGT # Right flank : ATGATAGGGTATTGTCTTTTTTTGGGTGCTTGTTTTATCTCGGTGTTTCAAAGAACGCTTTTCTTTACAACGCTCTTAAATCGCGTTGTTCTATTTTTAGGCATTGCCTAATGCTTTGGCTCAACTTCTGATGCAGCTGCTTCATTCTGGTAGCTGCCTCTTCGTTTTTTAGTCGGAACTCCGCCTCGGTGCTGTTTTGTTCTGCAAGTAGGAGCTTATGAACGATACTACGGTACTCAAAAAACTTTTTGGTGACTTCCTCAGATAAGAAGAGCCCACAGCCCTCCCCATAAAATAGTTCTGGGAGTTCCCTTAGAAAGGCTTGGGCATTGGCTCGGTTAATATAATGAATTTTATCCTTTTGCCCTTTGGGAACTTCCCATTTTAAGAGGTTTTTGGGGTTGTCTTGGTCGGTCATATACGCCAGCAGACGGTACATCTGCTTATGGGCATGGAGTATGGCCTCGTACTTTTGGCGTTCAATGTTGCCCTTAAGCTCT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.20, 5:0, 6:0.25, 7:-1.62, 8:1, 9:0.39, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGAATACCCTTCAAAATGAGAGTAGTCCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.16%AT] # Reference repeat match prediction: R [matched GTTGTGAGTACCCTTCAAAATGTGATACTTCCCAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //