Array 1 17036-15055 **** Predicted by CRISPRDetect 2.4 *** >NZ_DAASWB010000015.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 SAMN03470047-rid5268403.denovo.15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 17035 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 16974 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 16913 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 16852 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 16791 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 16730 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 16669 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 16608 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 16547 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 16486 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 16425 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 16364 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 16303 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 16242 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 16181 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 16120 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 16059 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 15998 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 15937 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 15876 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 15815 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 15754 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 15693 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 15632 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 15570 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 15509 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 15448 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 15387 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 15326 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 15265 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 15204 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 15143 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 15082 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 163588-162050 **** Predicted by CRISPRDetect 2.4 *** >NZ_DAASWB010000010.1 Salmonella enterica subsp. enterica serovar Typhimurium strain LT2 SAMN03470047-rid5268403.denovo.10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 163587 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 163526 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163465 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 163404 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 163343 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 163281 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 163220 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 163159 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 163098 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 163037 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 162976 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 162915 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 162854 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 162793 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 162732 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 162671 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 162610 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 162548 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 162445 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 162384 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 162323 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 162262 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 162201 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 162140 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162079 29 96.6 0 A............................ | A [162052] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //