Array 1 107807-106269 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUR01000009.1 Salmonella enterica strain BCW_3062 NODE_9_length_214267_cov_4.28031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107806 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107745 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107684 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107623 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107562 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107500 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107439 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107378 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107317 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107256 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107195 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107134 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107073 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107012 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106951 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 106890 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106829 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106767 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106664 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106603 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106542 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106481 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106420 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106359 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106298 29 96.6 0 A............................ | A [106271] ========== ====== ====== ====== ============================= ========================================================================== ================== 25 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 125920-123939 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXUR01000009.1 Salmonella enterica strain BCW_3062 NODE_9_length_214267_cov_4.28031, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 125919 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125858 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125797 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125736 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125675 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125614 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125553 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125492 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125431 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125370 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125309 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125248 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125187 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125126 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125065 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125004 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 124943 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124882 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124821 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124760 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124699 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124638 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124577 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124516 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124454 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124393 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124332 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124271 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124210 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124149 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124088 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124027 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 123966 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //