Array 1 51860-51041 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_FIGW01000001.1 Streptococcus suis strain LSS42, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
     51859	    32	 100.0	    34	................................	TTAATAAAGCGGTCATTCTGTAGCTGGTCCTGAA 	
     51793	    32	 100.0	    33	................................	CCTTGAATGACAGATAAGATACTTGTTGCAAAC  	
     51728	    32	 100.0	    35	................................	ATCCTTACACGACGAATTGCAAAAAGAATATTACC	
     51661	    32	 100.0	    33	................................	TTACAGGAACGGCAGACTTCAGCGGGTCGTGGC  	
     51596	    32	 100.0	    34	................................	TTGCCACACTCGATAACCATATCTCGCTGTTGCC 	
     51530	    32	 100.0	    33	................................	ATGTCTCAGCGGATGAGATTACCTTTGACCCTG  	
     51465	    32	 100.0	    33	................................	ATGTCTCAGCGGATGAGATTACCTTTGACCCTG  	
     51400	    32	 100.0	    35	................................	CTCCTACTGCACCTATTGAAACATGTATCTTAGCG	
     51333	    32	 100.0	    34	................................	GGCTCCAGTCCTCCACCTTGCATGGCGTTTAAAC 	
     51267	    32	 100.0	    33	................................	TTTGAGCGTGGTTTGGCATCTCGGGAAGAAATT  	
     51202	    32	  96.9	    34	......................A.........	AACGTATCGACAGACTACCTGCTCGGACGGACCG 	
     51136	    32	  84.4	    32	.......T..T....A.....C..G.......	TGGACGGCACTATGGAAACACCTGGCACATCG   	
     51072	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                  	
==========	======	======	======	================================	===================================	==================
        13	    32	  96.2	    34	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                   	       

# Left flank :   CAAAAGCTATTCGAGGCGAGTTGGATAGCTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAGACAGCAGCTGGACGAAAGCGGTTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTTTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGGGAGATACTAGTTATGATCCAGATCAAGGAGTTCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTATATTTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACTGCCTACTATTTCGTGCAGGAAATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTAACGGTGGATGGAGCAGATGAGGTTGATGGAGACTTCAATGGGATTAAAGGCGGTGGTGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT

# Questionable array : NO	 Score: 9.07
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [16-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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