Array 1 16645-12278 **** Predicted by CRISPRDetect 2.4 *** >NZ_LNSZ01000097.1 Xanthomonas translucens strain B2 flattened_line_26, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ===================================== ================== 16644 31 100.0 35 ............................... TGGCACCGACGATACGCATCGCCGACAACGCGTAC 16578 31 100.0 35 ............................... TGACAAGTCTGCCTGCTCAAGTTCGTCCCGACCCA 16512 31 100.0 35 ............................... ACGCTAACGCCGTGGCTGGTCCGAATCGAGCAAGG 16446 31 100.0 33 ............................... TTTTGTGTGCCGGTCATGGTGCCTCCTCCGGAG 16382 31 100.0 34 ............................... CGATGTAGTCACTGTAGGCATCGACGGCGGCGGC 16317 31 100.0 36 ............................... TGGAATCTCGTGGATACTCTGTCGAGGCTATCTGTC 16250 31 100.0 34 ............................... GCGAGAGGGCGAACATCGAACGATGCTCGATGAA 16185 31 100.0 34 ............................... ATAAGCCCGTCGATCTGATCCAACCGCGACTTCG 16120 31 100.0 35 ............................... GTGAAGAACATGGTCACCATCCTGGGGGAAAAGCG 16054 31 100.0 34 ............................... CTGCGCAGTAATAGAGCGCAGCTTAGACTCCCCC 15989 31 100.0 35 ............................... AAGCAGGTGGTATTGGTCGATGGCGCCACCTTGCG 15923 31 100.0 37 ............................... TCCTGTAGGGCTAGACGCTCTTCGAGGCTCATTACGC 15855 31 100.0 35 ............................... GGATCATACGACGTGGAAACGGGCCGCCGGCTTAT 15789 31 100.0 35 ............................... CAAGAGGAGCAGGAGCGCAAGGCCAAGAAGGGTCC 15723 31 100.0 34 ............................... CTTTGCCTGGCTCTGGTCGATGCCCTTCTCGGCC 15658 31 100.0 35 ............................... TCGGATACCCTGAGCACACGCTCGGGTGAGATGGT 15592 31 100.0 33 ............................... TCGGGCGTGGTCCGCAATCAGGTAACCGTCCTG 15528 31 100.0 34 ............................... ATCTAAACAAAGAGGAATTCCGATGACGGACAGA 15463 31 100.0 34 ............................... GAGGTAACCGGCCCGTACGATAAGGCGCGGATTT 15398 31 100.0 34 ............................... CTCATTAGCTCTGTCATTGCCACCGATTCCAACA 15333 31 100.0 35 ............................... CCAGCGTGCCGCGGGAGGGCCTAGAGGAGACCACG 15267 31 100.0 34 ............................... CGCCGCAACAAGGCGCCCCCCTGCTTCTCTGTAC 15202 31 100.0 35 ............................... AATTAGACTTTCGAAATCCGCGATCTGCGAATCCA 15136 31 100.0 35 ............................... GCAGAACGGACGTAGCATGTGCGAAACAACCCACG 15070 31 100.0 35 ............................... GCGAAACATTGCGCTGGTGTTAGCACGCTTGCCGG 15004 31 100.0 34 ............................... CTCCAAGCGCTGGCGAGGCGTGCCGACATCCATA 14939 31 100.0 34 ............................... CCTACCACGCTGCCCAACGACAGCGCAGAGCGCA 14874 31 100.0 35 ............................... TGGTCCTTCATCCCGTCGATGACCTGGCCCAGGTT 14808 31 100.0 33 ............................... TGCCGCGAGCGAGCCGATCGACGCCCTTATAGC 14744 31 100.0 35 ............................... TGCCCGAAGGTGACGCGCGAATCGTATGCGCCGAT 14678 31 100.0 36 ............................... ACCGCAGCGCCGGCATTGGTGACCGGTGATGCGGCC 14611 31 100.0 36 ............................... GCGTAGTGGTCTCCGCCCGCAGGCGAAGGTCGCCGG 14544 31 100.0 35 ............................... CAGCGCGTCCCTGCCCAGCGCTGAGGACTTTACGG 14478 31 100.0 34 ............................... AGGGGTGCGAAGCTCCTGCACCTTGATCGGGGTG 14413 31 100.0 35 ............................... AGGTTAAAGCCAACCAGCACGCTAGTGCCCTCCAG 14347 31 100.0 34 ............................... TTCGCCTGGCTCTGGTCGATGCCCTTCTCGGCGA 14282 31 100.0 34 ............................... ATAAATATGTTGGGAGTGTCTCTTGACGCGGTTG 14217 31 100.0 34 ............................... AAGGAAGATGGGCAGATTCCGTTGGTCCTGGCAG 14152 31 100.0 35 ............................... GCCAATGGCCTGCAGGTCGCCACCCGCATGTTTGG 14086 31 100.0 35 ............................... ACCAAGGTGGAAACTGTTGATATGGACGCCTTCGT 14020 31 100.0 37 ............................... TTGTCCTTAAGCAGCAGGTGCGCACGGCAGTAATCAC 13952 31 100.0 35 ............................... CGTGAAAAAGCTCTACATTGCGCACGGTGACAATA 13886 31 100.0 34 ............................... ACTAAGACGGTGAGCGTGATGGACCTGCGCACCA 13821 31 100.0 35 ............................... TCGGTGTTCAACGGCCGTCGCAACCTCGCTGAGGA 13755 31 100.0 35 ............................... ATCGCGTCCAACGGCACGCCGAACACTTCGACGCG 13689 31 100.0 35 ............................... TGGTCCTGCCTGTTGGCGATCGTCATCTGCTGGGC 13623 31 100.0 35 ............................... CATGAGGACCCGAGAAGTAGCGCCTACTGCCACCG 13557 31 100.0 33 ............................... TTCATGGGTTTCCCTCTGTGGGTTTCGTGGGCG 13493 31 100.0 34 ............................... CTGATTCGCCCGAAGCTTACCCTTACCACTCACG 13428 31 100.0 33 ............................... TCGCTCGGCTTGGGTCCGCTGGCACTGGCCGTC 13364 31 100.0 37 ............................... TTGAGCCCCACGATCGCCTCGGCGGTGCGTGTGAAAG 13296 31 100.0 35 ............................... TCCGGCGAGGACGCCGACGGCCTCGGCGACCGGGG 13230 31 100.0 35 ............................... TTGAGCCCGACCGCCTGCGCGGGGATTCTGCGCCG 13164 31 100.0 34 ............................... TCATCAAGCTGGCGGCAGAACTCGTTGTCGAAAT 13099 31 96.8 35 ..........T.................... CGCTGCCCGGTCGCCCTTAGCGCCGCCGTGTGGAG 13033 31 100.0 35 ............................... GTGGCCGCGCGGATGCCAGCCGCGAGCGGGTACAT 12967 31 100.0 35 ............................... AAATCTAGTTCACGCCGATGTGCCGGCGCTGCTGC 12901 31 100.0 34 ............................... AAAATCCCGCAGTTCGAACTGATTTACAGAAAGC 12836 31 100.0 35 ............................... CTGCTTGCTGAGCAGCTGCTCCCGGCCACGGTACC 12770 31 100.0 35 ............................... ATTGCTTTACGCTATCGGCGCGCACAGCACGCGAG 12704 31 100.0 35 ............................... CCACCGGCCAAGGCTGGAAGTCCGTATTTGGCACG 12638 31 100.0 34 ............................... CAGTTCTCGTGCCCGGCACCGCCAGGCTTCTTGC 12573 31 100.0 34 ............................... TGGAACAGCGAGAAGCACCACACTCGCATGAGGC 12508 31 96.8 34 ............G.................. AACCGTAGGTTGACTGGTTGGCCTGCCAAATAAA 12443 31 100.0 36 ............................... AGGAGGCGCTGTCGTCCACGATCCGCACCGCCAAGA 12376 31 87.1 33 ..............AT....C..G....... ATGTATTTGTTCGAAGAACATGTTCTTGCCGGT 12312 31 93.5 0 ...............C.........C..... | G,G,G,T [12282,12302,12304,12308] ========== ====== ====== ====== =============================== ===================================== ================== 67 31 99.6 35 GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Left flank : ATGAAAAGGCCGCCGCGCCATGATGGTTCTGGTCAGCTACGATGTCAGCACGAGTTCCCCCGGCGGCGAAAAGCGACTGCGCAAAGTCGCCAAAACCTGCCGTGATCTCGGCCAACGCGTGCAATTCTCGGTCTTCGAAATCGAGGTGGACCCTGCACAATGGGCCGCATTGCGGCAGCGCTTATGCGACCTGATCGATCCAGGCGTCGACAGCCTGCGCTTCTATCAGCTCGGCGCGAAATGGGAAGCCCGCGTGGAGCACGTCGGCGCCAAGCCCAGCCTGGACCTCAAAGGCCCACTGATCTTCTGACGCGAACCGCAAGCGACCGGGGAAAGCCGGGCAGGTTCGCGCAACAAAACAAGTCATTGATTTACAAGAAAAAAACCAACCTCTTCCGCTCACTACAGGTCCGCGGCAGCCCAATTCGATTGCGTCTCCGAAGGGTTCCGCAAAAGTGCGGACTTTTTTCCAACACCCATCAGCACTTATGCTCAGGGCG # Right flank : TGGCTTGGCGACGATATGTCGTTCTATCGCCTTTGCCCACAAAAAAGGGCGCAGTCTCGCGACTGCGCCCAGCGTGCCGCGCCGGCCGGGAGAGAGTCGGCTGGCGCGATCCGTGACTGCGGTGTGCTTAGCGGGACGCGATGCGCATCACTTGACTTCGAATTCCTGCACCGTTCCGGCCGGCTGGCCGTTCACGGTGACCTCGGCCTTGTACTTGCCGGCCGGCCAGCCCTTGGCGTTGGTGAAGGAGATATTGGTGGTTTCCGCACCGGCCGTGGTCAGCGTCGCGTTCTGCTCGCCGGCGGTCTGGCCGTCCTGGAACAGCAGCTTGGCGCCGACAGCGGTGTTGGTGGAGGAACCCTCGGTCTTCACCGAGACGATGATGGTGTCCTTGCTGCTCAACGTGCTCAGCGGCGCCACCGTCTTGTCGGCGCCCGCACTGTTGCCCACGGTCACCGAGGCGACCGTCACCGTGCCGGCAGTGGCCGCGGCCGGCGCCG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGTCCTCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGTCCTCACGGGCGCGTGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //