Array 1 143946-150028 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSGN01000008.1 Corynebacterium hadale strain NML99-0020 NML99-0020__17420_8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =========================================================================================================== ================== 143946 29 72.4 107 TCCA........GTC..T........... TAGTTTGGGCGTGAAAGTAATTCATCCCCGCGCTAGCGGGGCTTCGGTTCTTGGAGAAGTTGAATGCTAAGATCGGGAACAGCTCGAATATCCGCTGGTCATTCAGT 144082 29 100.0 32 ............................. GCACTGCCCGTCTCTGTGGGATACGCCGCCTG 144143 29 100.0 32 ............................. CTAGAGACGGAGGGATGGCAGCGCATGGTGGA 144204 29 96.6 32 ............................G CTCGTCTGCGACCTCGCGCAGCGTGTCAAGCG 144265 29 100.0 32 ............................. TGCCGCCGCTGCGCGTCGGCCCGGGCATGGTT 144326 29 100.0 32 ............................. TGTGCAAGGACCTGCGTAACCAGGTCGAGCCC 144387 29 100.0 32 ............................. TCCCGCCTGTCGGCTTGGCGTGATACCGTCGC 144448 29 100.0 32 ............................. ATGGCGAGTCTCCTTTTTGGTGTTTGAGCAGG 144509 29 96.6 32 ............................T CGGGGTCACACCATGCTTACGCAGCGAAGGCC 144570 29 96.6 32 ............................G AAGGGCGGCACGACCAGCCCGGACGTGATCGA 144631 29 100.0 32 ............................. TTGCGTCCTTGCCGAGTGCCGAAATCGACAGC 144692 29 96.6 32 ............................G AAAACGACCAAGCCCGCCACCAGGGCTGCAAC 144753 29 100.0 32 ............................. GGCGCGCGGCTAGCTCGTTCCCGCCGAGTGCG 144814 29 96.6 32 ............................A TGTGGGCGACTTCGTCGACGGTGAGGTAGTCC 144875 29 96.6 32 ............................G GAAGCCGTACAACGCGAATGGCGACAGTCCCG 144936 29 100.0 32 ............................. GTTCGGGGCGCTTGCCGGAGTCGCCGATTACT 144997 29 100.0 32 ............................. CCGGCACCGGATAGCCATCGTCATCTACACCA 145058 29 100.0 32 ............................. GCTATCGGGTCGATTATGCCGGACAGGATTCG 145119 29 100.0 32 ............................. GGTGGCTGCAGCTCGCGGCGAAGCAAGCGGTG 145180 29 100.0 32 ............................. GAGCAGTTGCGCGCGCTGGCAGACGAAGAGCT 145241 29 100.0 32 ............................. AACGACGCCGGCGATGTTCACTCCGGCTCGTA 145302 29 96.6 32 ............................G GGCAAAGGCGGCCACGTGAGGAACGTGCCGGT 145363 29 96.6 32 ............................G GGCAAAGGCGGCCACGTGAGGAACGTGCCGGT 145424 29 100.0 32 ............................. GCGGGGATCGGCACCAGGGCGACGGCGGTGAG 145485 29 100.0 32 ............................. ACCAGCAATTGGGGCATAAGTGCGGATTGCGA 145546 29 100.0 32 ............................. CTTGGAGCAGACATGATGATAGACCAAGCACT 145607 29 100.0 32 ............................. TCAAAGCACCGACGGCGCACCGACACACTATT 145668 29 100.0 32 ............................. GCGAAAGCAACACTCGGCCAACAATTCCTCCC 145729 29 100.0 32 ............................. CCGGTCGTGGTGTTCGGCGAGGCTAACGACTA 145790 29 100.0 32 ............................. GCGATCCGCGCGGCCCTGCCCAACGTCACCAC 145851 29 100.0 32 ............................. GAGTATGTGATTTGGTCAACGGTGGTTGATCT 145912 29 100.0 32 ............................. TTTCCGGTCGTTGTGTCGTAACTTTCCGCCCG 145973 29 100.0 32 ............................. GGGCTCGCCACCCACGCCTACGGGTTTGTGGT 146034 29 100.0 32 ............................. TGGCGAAGCGTCAAGTCGAGGAGCAGCAGCGC 146095 29 100.0 32 ............................. CGCGTTCAAAGTGCTCAACACAGTCATTGCCG 146156 29 100.0 32 ............................. AGCTTTGCTGTTGGCTTCCGTCGCCTTGGTGT 146217 29 100.0 32 ............................. GTCTCCCCCACCACTTCAACATCTATCGGCTC 146278 29 100.0 32 ............................. GGGCCGGTTGATCCGTTGGTGATCGTGCCACG 146339 29 100.0 32 ............................. TTCGCGGCGCGGGATTGCGCGTCTTTGGCAAC 146400 29 100.0 32 ............................. GAACAGACCGGCCAGGGCGGCGGGTGGAATAA 146461 29 100.0 33 ............................. GGGGCGACGGACATGCGCGCCAGCGCCGCGTGC 146523 29 100.0 32 ............................. CTGATTGAGCCGTGCTGGTGGTTCCGCACCGA 146584 29 96.6 32 ............................A AAGTGGCTGGGCAAGGTCGAAGACCACGCCCT 146645 29 100.0 32 ............................. AAGATGTCGGCTCGGCAGACCGGGCTGCACCG 146706 29 93.1 32 ..........T.................A AAGGCAGCGGGCGCAGAACTGTCCCCGGACAT 146767 29 100.0 32 ............................. GTGCGCTCGTGGTCTCCCGGAAGGACGCGGTC 146828 29 100.0 32 ............................. GACCACACGGCGCTCATCGGGTGCCGGATGGA 146889 29 96.6 32 ............................A CCTAAGCGGCGCGCGGCGGCGTTGGCGAAAGC 146950 29 100.0 32 ............................. AATCTCACCCGCGACAACGTGCAAACACTCAC 147011 29 100.0 32 ............................. GACCGACCCACGGGTACCGGCGTGGTGCTGGA 147072 29 96.6 32 ............................G CGGAGACAGAAACCATCGCGCACGCCCTGCTC 147133 29 100.0 32 ............................. ACGGTATTCACAGCGCCGGTCGCCTGCTCGAG 147194 29 100.0 32 ............................. TGTCGGTGAAGTGGGCGGAGTCGGTGACTAAG 147255 29 100.0 32 ............................. TCGCTTGAGCCAATGAGTCGCTGGGACGCGCT 147316 29 100.0 32 ............................. TGCTCAGCACCGGCAAGGTCGTACGGCCCGGC 147377 29 100.0 32 ............................. TGAGACGAGCCCCGCGGTGCCGGACAATTCCA 147438 29 100.0 32 ............................. GAGGTGCTGCACATGGCGGGAAGCCTGCTTGG 147499 29 100.0 32 ............................. TCGACCGGGACGGCGACGGCGTCGCCTGCGAA 147560 29 100.0 32 ............................. CTCCTGCACAACCACCTCGAAGGCTGATCGCT 147621 29 100.0 32 ............................. ACGCGAAAGGAGAACAGCCATGAGCCGGTGGG 147682 29 100.0 32 ............................. CCGCTGGTGCTGAATTCCACGGATCTTGCTGG 147743 29 96.6 32 ............................G GGCCTGGGAAATAGCGCGCAGGATGTGTCCGA 147804 29 100.0 32 ............................. CAGCCGCCGAGGTCGCCGGGGAGGAGGCGGTG 147865 29 96.6 32 ............................G GAGTACAGCACCGACGAGGACGCGCCGGAAGC 147926 29 100.0 32 ............................. GAGGCCATCGCCCGCGAGATCATCGCCCCGCT 147987 29 96.6 32 ............................G CGGTTGAGGATCGCCGGTGGAGTGATAGACCG 148048 29 100.0 32 ............................. GCGCGCTCACCGCGCACGGACGTGCCACTGTC 148109 29 96.6 32 ............................G TCCAGCGGTTTATCCGCATGGCGGAAGTCGCC 148170 29 100.0 32 ............................. GACGTACCGGCGTGGAATCAGCTCACCGACCG 148231 29 96.6 32 ............................G AACTTTTTGGTGAGCATGTCGCCCTCCTCCTT 148292 29 96.6 32 ............................G TATGCCAGGCTGCGGAAGCCCCAGCGCCCTCA 148353 29 100.0 32 ............................. TGTGCGCATCGCACATTCAGACCCTTGTTCAG 148414 29 100.0 32 ............................. GCATAATTTTGTGCCAATCTACTGAGGTTAAT 148475 29 100.0 32 ............................. ATGTCGGTCGGTCTGTGGATGGATCATGGTCT 148536 29 100.0 32 ............................. CCACTCGGGGACATCGAACTGGATTGTCCAGT 148597 29 100.0 32 ............................. CGCCTAGCCAATCTACGGTACGGAACTTCCAC 148658 29 100.0 32 ............................. GTCACCACCGCCAAGCATCGACTCCACCGCCT 148719 29 100.0 32 ............................. TACCAACATGACCTGACAGTGAGTTCAACCGC 148780 29 100.0 32 ............................. CTCAATCGCAAGGCTATCGGCATAGAAGTCGA 148841 29 100.0 32 ............................. GGCCAACGCCGACCGCAGTAGTCGACGAGCCA 148902 29 100.0 32 ............................. CAAATGCCGGTGCGGTCTACGACCAAGCGCAT 148963 29 100.0 32 ............................. ATGCGGTCGCTGAGCGTGTTAAAGGCATGGTC 149024 29 100.0 32 ............................. GCCGACGAAAACCACGACTTTTTTAGCGGCAG 149085 29 100.0 32 ............................. AGCGGAATGGTCACGGTGGACTTCGGCGGCAC 149146 29 96.6 32 ............................G GGAATGAGGTCACAGCAGGCGCGACGCTCAGG 149207 29 100.0 32 ............................. CCTGGCCCACCTTGTTTGCCGTCGTGGTGGGG 149268 29 96.6 32 ..........T.................. CGAAAGCCCGACATTCATTCCGCGACTCATGG 149329 29 100.0 32 ............................. CTGATAATCGGCGGGTAGCCGTAGGCGGCGCA 149390 29 96.6 32 .....................T....... CGCAGGTACTCGCTGAAGCGGAGCTCGCGGCC 149451 29 96.6 32 ............................G TCCGCAAAGTCACCGTCGACAACGTCGAGGTC 149512 29 93.1 32 ........T..A................. ACAGTGTGCTCAGCGCCAGGCTGCCCGGCCGC 149573 29 100.0 32 ............................. AGCGCAGCGCCGAGTTCGCCGGTCACTGGTTC 149634 29 100.0 32 ............................. AAGGGCGGCGGACTGTCCCGCACGGTGGTTGA 149695 29 100.0 32 ............................. CCTGAAGTAACAACAAATCCTTTTTGTACCGG 149756 29 96.6 32 ............................G TACAAGGCGATGGGCTCTACATCACCAACTAC 149817 29 96.6 32 ............................G TACAAGGCGATGGGCTCTACATCACCAACTAC 149878 29 100.0 32 ............................. ATCACCGCCTACCTCACAGAAGGGCGCCTGCG 149939 29 100.0 32 ............................. TGGCCCTTAGCCGCGTACACGCCCACCTTGCC 150000 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= =========================================================================================================== ================== 99 29 98.8 33 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : GGATTTTGCTCAATTTGAGTTTGGAAAGGGCGGGTGGCTTTCCCGATATCGTGAAGTCCTGCGAGCCAAACGTAGAGGTTGCGCAGCTGTTCGGTGGAGATCCCGAGATTCGTTGACAAGTTACGCTTCATTTGGCCAGGTACCCACGTATCGAAGACGCAGGCTGCGACGCAAGCAGTGTCCGCTAAATGCTGGGGGAGGGACAGAAACCCTGATTCGTCACCGGACTTCGCCCAGAGCGCTTGTGATTGTGGGCTCAGTGAAACGAGCCGCGAATCGAACGCGTGGGCGAGTTTGTGTGCAAAGTGTGGCACGCGGTGTTGGCCATTCATGGTTAGCTCTCTATGGAAGGGTTAAAACTGCTTGAATAATGTCTGTGTATGAAGTGTAGCGCGTTCCGTAATTTTTCGCACTTTCACGAACAAACTAGTTGGAAAAAATATGACGTAAGGTAAAGCCTACGCCTCTTGAGCGGGGCTTTTGCTCAGTATAAATTTGAT # Right flank : GTCGCAAAGCGTGTGAGGCAGTCCGGTGGCAGCCGTCGCCCCTTCGTAGCTGCCGCGTTTGTTTCATCGCAACATCACTTGCGGGTCCGCTCCGCCACCGCCGATCTAATTGCCGCGCTGACGCACACCCTTCCAAAACCAACCCAAGGCGCTCCCGGCCGCAGCCTTCCCCGCCATCCTGCTAACTAACGGCCGAAATCGCGCTGCCCCACGCGGAGTAGGAAACCAAACCCCCCACCGATAGTCCTCCACTCCGAACCACATCCGGGCGCGCTTCCGGTTCGCCTCGGTGAGGCTGGAGTAGGGCACGAGCTCCCCGCCCGCCTCCTTCACCGCGGTCTTCAGGGTGTCGCGCACCATCCAGACGTGCAGTGGGTGTGGGGTGGTGACGGCGAGGGCTTGGGTGACGTGGGCGTCGTTAAGCGTGAGGCGCTTGGCAATGCCGGAAACGGTGAGGCCGGAGCGCTCGAAGTTGGCGGCGAGCTCGCGCCGCGTGGCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //