Array 1 89019-87264 **** Predicted by CRISPRDetect 2.4 *** >NZ_POQJ01000028.1 Streptococcus suis strain 61 SS_0061_Contig28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 89018 36 100.0 30 .................................... GCTAGAAAATATCAAACGAGAAAAACAGTT 88952 36 100.0 30 .................................... TTCAGTTAAAGACCAGGGCAAAGGGCTGCA 88886 36 100.0 30 .................................... TTGATGTAACGTATGCAGAACCATCACATT 88820 36 100.0 32 .................................... CTGTCGTTTGTCCACAAACAACAATAGACCCA 88752 36 100.0 31 .................................... ATTGGAAGGCAAGGCTTATAAACTTGCAGCA 88685 36 100.0 30 .................................... AGTGCTTGATGTAAGCAAGTAATTGTGCCT 88619 36 100.0 30 .................................... TCAGCGCTGGAAGATAAGGAAGAAGAATGC 88553 36 100.0 30 .................................... CCGAAGAAAAGAATTTCAGAAGTGCGCAGA 88487 36 100.0 30 .................................... TAACGATAATGGCGACACATTAACAGAAGA 88421 36 100.0 30 .................................... TTTAAGATAAATATAGTGAAGTTCTTTGTA 88355 36 100.0 30 .................................... ACGACCCGCTCCCTTGTGCTTCTCCGTACC 88289 36 100.0 30 .................................... ATAGCCGAACCTTCTAACGACAAATGCGTC 88223 36 100.0 30 .................................... GTTACATAGCCATATTCATGTCGTTTTGCA 88157 36 100.0 30 .................................... AGTTTCCGACGGTTGACCGTTTTGTGAGTT 88091 36 100.0 31 .................................... TTTCCCACTTTGCAACAGTTGGCTGTTCTTG 88024 36 100.0 30 .................................... TGAGATAGTAAGAATTTTGCTTGTCTCACA 87958 36 100.0 30 .................................... CTATGATGCCTGTACTTAATTCTTTCGCCA 87892 36 100.0 30 .................................... GCGTCGGGGCTTTTGCCTTTTGCTGTGCTT 87826 36 100.0 30 .................................... TCATTTTTTCTCATTCCAGTGAAGGCTAGC 87760 36 100.0 29 .................................... TCTTGAAAGCTAAGCTAACTCCAGCAGGA 87695 36 100.0 30 .................................... ATTCTGTTATCTGGTTAGATAGTGCTAAAT 87629 36 100.0 30 .................................... AACGGCTTTATATCAGAAAATGAATAAAGA 87563 36 100.0 30 .................................... TAAGGAGACTTTGGCTGGGGTACATGGTAA 87497 36 100.0 30 .................................... AAGAGCCTCACCCCCTTTCCTTGTATGATA 87431 36 100.0 30 .................................... TATGTGGGTATATTACCTGGCTTCTACGAT 87365 36 100.0 30 .................................... TCCTCAGAAAGGGAAAACAGAACTTATCCA 87299 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================ ================== 27 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAAAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGTGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGGTTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTGTTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACGGACGGGATGATTGTTGGACTGGGGACTGGCTCAACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //