Array 1 83937-83052 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFK01000042.1 Escherichia coli strain OU-NP029 sequence042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83936 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 83875 29 100.0 32 ............................. CGCGTTTCTGAAACCGTAATTTGCTGCGGTAT 83814 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 83753 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 83692 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 83631 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 83570 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 83509 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 83447 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 83386 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 83325 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 83263 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 83202 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 83141 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 83080 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 100761-99146 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGFK01000042.1 Escherichia coli strain OU-NP029 sequence042, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 100760 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 100699 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 100638 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 100577 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 100516 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 100455 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 100394 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 100333 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 100272 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 100211 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 100150 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 100089 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 100028 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 99967 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 99906 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 99845 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 99784 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 99723 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 99662 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 99601 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 99540 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 99479 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 99418 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 99357 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 99296 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 99235 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 99174 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAGCTGCCAGATCGAAACCAGTGGTACTCATGAGGTACGCTGCACACCGAATACCTGGGTTACCGTATCGCCAAAGCTGAACATGCGCGGCGGCTATGACGTGTTGTCACAGGCACTGGAGCGAGCCAACGAAATCAAGCATCCAGTGGGGCGCGTACGCGATATTGAAGCACTGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACCGGATACGCTTCATCGCCCGACGTGGGGAGCATA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTTATTATGTTCCCTGCATCAGCGGGGATAAACCGGACTTGTTATCATTTTTTAAGTTGTCGAACTTATGTTCCCCGCGTCAGCGGGGATAACCATTCAGGTATGTTCAGGCCGGGCAGTTTCCCGCCCGGCCTTCCTCACTTACGCATTCGACCAGCTCTGGATCGAATCCACATTCCCCAATTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //