Array 1 392900-396685 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080538.1 Myxococcus xanthus DZ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 392900 36 100.0 34 .................................... GTCCGGCGCTTCAAAATCTCTTTCGACTCATGCA 392970 36 100.0 37 .................................... CCGTGGTGGGTGATGGCCCACGTCCACGGGCGCGCGA 393043 36 100.0 35 .................................... AGGTACTTCTCCAGGCTGCCGCGCATGCCCGTCAG 393114 36 100.0 35 .................................... GGCCTGATGCGCTCAGGCGGGTGGCTAGATGGATG 393185 36 100.0 35 .................................... ACGTGGCACGCGGACAACCTGCGCGTGCATGCCAA 393256 36 100.0 35 .................................... GCCGCGCTCCAGCATCGTGACGACGAGCACGTGGT 393327 36 100.0 36 .................................... TCCGTCTTCACCGTCATGTCGTCGTCCTCCCTCAAG 393399 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 393471 36 100.0 39 .................................... TCCATTGGCTGAGGCGAATGCCTCATTCCATGGTCTGTT 393546 36 100.0 37 .................................... AATTGGGCCTCGCGGTGAACACCGAAAATCTGGTCCG 393619 36 100.0 35 .................................... TCGAACCTTCCGATGCTTGAAGGTCACCGCATGGG 393690 36 100.0 38 .................................... AAACTATACTCAGTCCTGATTTGCATTTGCGTCCTCCG 393764 36 100.0 38 .................................... CTAACAACGCTTTTGCTGACCCTGTGCAATTGGTTAAC 393838 36 100.0 36 .................................... TCCAGCTCCAGGTGGGCGCCAGCCAGCGCGAGGCGG 393910 36 100.0 36 .................................... ATGTCCTCGGCAATCAGGACGAAGGCGGCGCGTTCG 393982 36 100.0 37 .................................... GTGCGTCTGGCCTTCGCCGTCGTGACGAAAAGGATGG 394055 36 100.0 35 .................................... GTGCTACCTCCTACTGCATGAGAGACAAGGCGGGA 394126 36 100.0 37 .................................... CCATGAGAAGGCCATTGTCCCCTTCACGGGTTCATAG 394199 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 394273 36 100.0 38 .................................... TCGGCGAGGTCGCTCCGGGCGTAGTCCAGGGCCTTGGC 394347 36 100.0 34 .................................... TCTGGCACCGGGGCCGTGGAGCGCGCTGGGTTCA 394417 36 100.0 40 .................................... TCGAGGCCGGCCAACCCGGCCGTTGGGTGAGTTCGAGAGA 394493 36 100.0 38 .................................... ACGGCGATGTGCAATGCGAAGCGTATCTCGGTCCCCTG 394567 36 100.0 37 .................................... CACGACATCCAACCCGGCCCGCGCCATGTCCGGGGCG 394640 36 97.2 36 .........A.......................... CTCCCATCGCGCCCCGTGAACGTCTTCTCCCGTCCA 394712 36 100.0 33 .................................... CTCGTATCGAGTCCAGGAAGCTCCTCGACTTCA 394781 36 100.0 38 .................................... CGTCGCCATGTCGTGTGTCCTCTGCGGTGCTGCGGGTG 394855 36 100.0 40 .................................... GTCAGGGCGGCGCTCAGGTACTCTGCGCGGTACTGAGCGG 394931 36 100.0 33 .................................... TCTGCCATTCGCACGATGCCGTCCGGCTTGAAT 395000 36 100.0 34 .................................... TCCGAGGTGGGCGGCAAGGTCGAGTGCGAGCGCA 395070 36 100.0 36 .................................... CCCAGGCAGGCCCGATATTCGGCTTCAGCGCTCCAG 395142 36 100.0 40 .................................... CACATCGCGGCGACCTGCCGTGACGAGAAGGCCATCTGGT 395218 36 100.0 34 .................................... AGGACAACCGCATCACGAAGGGGGAAGCGACGAT 395288 36 100.0 34 .................................... CTCGCCTACGAGCACGACATCTTCAAATCAGGAG 395358 36 100.0 37 .................................... AAACCCCCGTCGCGCCCCATGTAGCCGACTGGGTGGT 395431 36 100.0 36 .................................... AAGAAGTCCGGCCGGATTGAGCGGATGCGGCCTATG 395503 36 100.0 35 .................................... CCTTCCGTGCGATGCGCCAGAAATTGACTGGCAAG 395574 36 97.2 36 ......G............................. ATGACAGTGATGATGCGTGGGTCCGGGACGGTCAAC 395646 36 100.0 37 .................................... GGAGGGTGCTCCGCGATCTCCGGTGCCGAGTTGCCCG 395719 36 100.0 37 .................................... TAGTCATTCACGAAGATGGAGATGCCGCGGTACGCAG 395792 36 100.0 36 .................................... TCACCATGGCGGCCGTGCGGCGAAAGCCGCGCAGGA 395864 36 100.0 36 .................................... TCGTAGCCGGAGTACCACCCGCCATTGCCGTTCTCC 395936 36 100.0 33 .................................... GTTTGAAGATTGCCTGTTAGGCCGTAAGGCTTC 396005 36 100.0 35 .................................... CTGCAAGCACGGTGGCCAGCAGCTTGCCGCCGTTG 396076 36 100.0 38 .................................... AAACACACGGGGTGTTTCAACATATCGCCGTCGATTTC 396150 36 100.0 36 .................................... CCGAACCCATGGAACGGGTCATATTTATTGAACATA 396222 36 100.0 34 .................................... CTATTACGCGCGCTGCGAATGCAGTCATCCAAGA 396292 36 100.0 34 .................................... CTCGCACTCGACGCGAGACGGCGCCAACCCACCA 396362 36 100.0 34 .................................... GCTTCTCCGTCCTTCTTCTTGTCGTCTGCCATTT 396432 36 97.2 39 ...................................T GTGGTCCAGTGGTCGCCCTTCACGCGGACGACGTCGGGC 396507 36 97.2 37 .....................C.............. AAGGCTGGTATCCGTGACGCGGAGCGCTTGGTACGCG 396580 36 94.4 32 ..C............................C.... TAGTCGGTTCCGCCATTCTGGTGTTGCCAGAC 396648 36 94.4 0 ...............................CT... | GC [396651] ========== ====== ====== ====== ==================================== ======================================== ================== 53 36 99.6 36 GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Left flank : GCTGGTGCGTATCGCCGGGAAGCGGGTGGTGGGTTACGCGCTCGAGCTGCATGGCGTTTCTGGAGAGGACTCGTTGCGAGTGCAGGCACAAGGCCTGGGCGGGCGCCGCCACATGGGGTGTGGCTTGTTTCTTCCGCCGCGTCCCGTGGTGCGGGGCGTTGTGCCGCAGCTCGGGGAACTCGCGCGGGCCGCGTGAAGGCTTGCCGGTGGAGCAGGGGCCTTGCAGGAACGTAGGACCGGGGGCTGTGCGGTGCGTGACATTCATGCACCTCGCCGTGGTGGAGGCCTGTGCCGGTGAAATCGTTGAAATCCTCAGCGAGTTCATGGGGTTGGGGCTCTTTGACAGGTGAATAGGTGCATGATTTATGAAAAACCGAGTGATTCCATGGGGTTTGGAATCTTGGGTAGGGCCTGGGAGGCGCAACCTGGGGCCGGGAGGGGGGAGGTGCTTGAAAAGACGGGAGTAAGTTGCCGGAACTGCTGGGAGATTCAGATGGGCT # Right flank : CATCTGGAAGCTGCGAGGCCATCCTGCTTTCCAGCAAGGTCGCGCTCGCCGTACAGGGCCTCCATGAGCGAACATCAGGTCTACGAGTTCGTGGCGCTGGACCGGCCCTTGACGGCAAAGCAGCTGGTCGAACTCCGGGCCATATCGACGCGGGCCGAAATCACACCGACCCGGTTCTGGAACGAATACCACCGGGGTGGCTTGATGGCGGACCCAGCCCAGCTCCTCCTGCGCTACTTCGATGCGCACCTGTACCATTCGAACTGGGGCGACCGTTGGCTGATGCTGCGCCTGCCGCGTGAGGGGCTCGACATGAAGGCGCTCAAGGCCTGCTTTCCGGCACGAGGTCCATCAACGCTCACGGTGTCTGGGACCTCCGTGTTGCTCGACTTCCAGGTGAGGGATGAGGAGCCCCCGGACGAGGAATCTCCGCCCGCCTCGCTCGCGGCGCTGGTTCCGCTCCGGACCGAACTCCAGCGCGGAGACCTGCGCGGGGCCTA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCCGCTCGCCGTGATGCCGGAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 418538-420152 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080538.1 Myxococcus xanthus DZ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 418538 36 97.2 37 ...T................................ TGCTGACGCACCACGGCAAGCGGATGGGGCGCTGTCA 418611 36 100.0 39 .................................... GTTTCCGACGCGCACGCGCTTGCGGTGTCCGTCCGGGTC 418686 36 100.0 35 .................................... AAGGCGTTGCGCGCCACCATCTGGCAGTGCATGCC 418757 36 100.0 35 .................................... CCGTGGCGGCACACCTGTACGGTGCCAAGTCATGA 418828 36 100.0 35 .................................... AATCCTCACTGTACGAACAGCCCGCGCTGCGTCCT 418899 36 100.0 36 .................................... GCCTGATGCAGCGTGGATACACGCTGAAGCCGCCTG 418971 36 100.0 33 .................................... GAGAAGGGTGTCAAGGCTAGCATTGAAGGCTTT 419040 36 100.0 36 .................................... GAGGTCGCTGCCGCCCTGCGCGCCGTGGGCTTCCAG 419112 36 100.0 37 .................................... GCGTCTATCGCCAGGACAAGGGCTGTGTGTCCTTGGA 419185 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGTT 419258 36 100.0 33 .................................... GGCGCGGAGCCGACCGCCATCGCGCGTTCCTTC 419327 36 100.0 35 .................................... CGCCAGGGGGGGTCCTGAACGCGATTCACCGCGTC 419398 36 100.0 37 .................................... AACGACCTCTGGTCGAAGTTGGTGCGTGGCAACGAAT 419471 36 100.0 37 .................................... CCTCGGATGTTGCGTTGGATCGCGTCGTAGGTGTGCT 419544 36 100.0 36 .................................... CAGGGCTGGGACCTGTATCTGGAGAAGACGCGCGTT 419616 36 97.2 37 ...........A........................ TACCCACCCATGCCGACCGTTATCAGCTCCCACATCT 419689 36 100.0 38 .................................... CTCGATGCGATGGGTTCGAATCCGGGCGGTCCTGTGAC 419763 36 100.0 33 .................................... TCCCGGGCCTGAGCTACACATCCGCGCTGGCAT 419832 36 100.0 34 .................................... GTCAGCATCGCGTCCGGAAACTTGCCGAGCGCCT 419902 36 100.0 35 .................................... CTTTACCTGCCGCGCCGACAACGACCTGCGGCGGC 419973 36 100.0 35 .................................... CCTTGGTACGTGGAGTGCGGCATTGCAGCTCTCAT 420044 36 100.0 37 .................................... CTGCCGCGTCCGCCCATGTTCTTGCTCTCCATGTTTC 420117 36 94.4 0 ..................................GT | ========== ====== ====== ====== ==================================== ======================================= ================== 23 36 99.5 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : CGCGACCCCAAGCGGTGGCGGAAGGTGCATGCCCTGCTGAAGGGATACGGAGAGTGGCTGCAGCTCTCCGTGTTCCGCTGCTCGCTGACGGACCGGGACCGGGAGAAGCTGCGCTGGGAGCTGTCGCGGCGGATGGACGCCGTGGATACGTTGCTGGTGATTGGGCTGTGTGGCGGGTGCGTGGAGCGCGTGCGCGCCATCAACGCGAAGGAGGACTGGCCGGAGGAGCCCGCACCGTTCAAGGTGCTGTGAGACGGACGACAATCAAGCACCTCGCCGTGGCGGAGGCTCGCGATGGCGAAAGTGGCGGATTCCCTGTCGTTTCATGGGGGTGAGGCTCTTTGACAGGTGAATAGGTGCATGATCGATGAAAAGCCGAGTGGTTTCATGGGGTTGGCGATTCTGGGTAGGGCCTGGGATGGCCAACCTGGGGGAAGGAGGGGGAGGTGCTTGAAAGGGGTTTGTAAGGTGCCGGAATTGCTGGGGGATTCAGGCGGGCT # Right flank : TCGCTGGTTGTTACGCCAGTCGTTGTTGGTGTGGCCGCACACACTATTTGAGTTGTGAATGACTGTTCTCGCGGACACTGATTGAGGGGCTCGCGAGGAGAGGTTCCGAAAATGCCATTACGGAGCCGCGCCACCGGAAATCACGCTCGTGATGGGAGTCAACTCATTGTCGCGACAGCAGTTTCCGCGAGAAGCGGAAATGATTGCTCCCATCCTGCGGTTCTCCGGTCGCGTCAGGGCTGCCCGAAGGGCACCGCCGGAGGCGGCCAAGCCCTTGACGCGACTGGGGAACCGTAGTCCCGAGGCTACCAACCAAGTGGCTCACCGGACCATCAACAAAGGTGCGCGGCAACACCTCGGGCGACAGCTGCAAGGTGGTATTGACGGAGATGCTCTGCGACATCAACAAGAAGTCATGCTGAACTCTCTCTTGCTCCCGTTTGATGCCCTACGCCATGAAAGAACTGCTCAAGTACATCAATGGATTCGAACCCGCATTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 421428-422043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080538.1 Myxococcus xanthus DZ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 421428 36 100.0 36 .................................... AACGCGACCTGCGGCGTCTCTTTGTATCCGTGCACC 421500 36 100.0 37 .................................... TCCCTGCGCGATAGGGCCGCGCGCGTGGTACCCTTCG 421573 36 100.0 40 .................................... AAAGGTGGGGCGTCCTCTCGCACCAGGTGCCCCGCGTGGG 421649 36 100.0 35 .................................... TCGACGGGGACGAAATGGGCTCACGCCTCTGGACG 421720 36 100.0 36 .................................... TGGAAGAAGACGGCCATCCGCCGGCTGATCAAGCTG 421792 36 100.0 38 .................................... ACATGGATGCCGCGCAGTGCCTGCATCGGCCCGAGCCC 421866 36 100.0 33 .................................... CCAGCGCATATCCCTCGTACCGCCCGAGGTTCG 421935 36 100.0 35 .................................... CTGAGCTGCGGGTGAAGGGGGCGTTGCAGGCCAAG 422006 36 94.4 0 .....A............................C. | CT [422038] ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.4 36 GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Left flank : GCTGACTGTCCTGTTGTCCAGGCGGACCCAGAAGAGCCGTTCAAGAACGAGGACCATATCGTTCCCCTGTATGGTCCCTTGAAGGACATGCTCTTCCTGATGGCCTTCAGCAGGAAGCGGATGGCCCTTCTGGAGCATCGGCGACGGTTCCTCCCTTCACTCGTGCGCAGCGGAACGGGGAATGTCCGAATCGTGGCTCCCTCCTTGGTGGGAGCCATCGACGAGACGCTTCTCCAGCTCGGCTTCCAGACGCTGCCCTATACCAGCCCACTGACTCCGCTCTACGAGCGCGGTGACGCAGCCTTCTACGTCGACCGTTCTTCACAGGGAGGAGGACTGTCCGCCGAGTTGGCGGCACGAGATGAGCGAGAATTCGGGAGGCTGGTCGAAGTCATCCAGGATTCTACGACTCTTGTATAGTATTATCCGGTCAGGTGCACCAAGCGCGGTCGCCCCGTGCTGACGGATACGGGCGCCATTGCCATCCCAGAGGACGGCAA # Right flank : CTATCAGAAGATCTTCATTGTAGCCTGGGCCAGCCATGAACGCAGCGCCTCGCCTTCAACCCGGACGGGCGCGTTCTCGTGACCCAGATCAATCCAGGAGGCCTGGGTCGCCTGTAATCCGGAGGCGCCGCGGAGATCTGCCCCAGAAAGCCTCGCTCCATGAAGGACCGCGCCTTCCAGATGCGCATCTCGGAGATTCGCGGACGCGAGGTTGGCACTGACCAGGTAGGCGCCTTGAAGGTCCGCGCCTTGAAGGTCCGCGCCTTGAAGGTCTGCTTCGCCGAAGCTGGCTCGGAGCGCGTTCACCTGCGTCAGAATGGCCCCTCGAAGGAGCGCATAGTCCAGGTTGGCCTTTGAAAGCTGCGCTCTGGAGAGGCTGGCGCCGATGAAAGATGCGGACGCAAGGTTGGCGTGGGCGAGCTTCGTCCTGTCCAGGATGCATCCATCCAAGCGCGCCCCAGGAAGCGCTGCCTCCGATAGATCTCTCGACGACAGGTCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCGCTCGCCGTGATGCCGAAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.27 Confidence: MEDIUM] # Array family : NA // Array 4 697711-701784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP080538.1 Myxococcus xanthus DZ2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 697711 37 97.3 33 .................A................... GGGCCCGAACACGCGGCGAGAGCCAGCGCCATC 697781 37 97.3 33 .................A................... GCTGGCACACGGGCGAGCCGGAACAGCTCCAGC 697851 37 97.3 34 .................A................... CGGATGGTCCACAGGACCACCTGGCGATCATCGT 697922 37 97.3 34 .................A................... CGAAGGGTTGAAGGCCACGAGTGCGAGTGGCAGG 697993 37 97.3 37 .................A................... CACGCAGGCCCAAGCGCAGCTCCATGCGCAGATCGCG 698067 37 97.3 36 .................A................... CGGGCAGGTGCTGTGGACCGCGTTGGTGGCTGTCGA 698140 37 97.3 32 .................A................... CAAGCTGTGACAGCGGTGTGACAGCGGATTCT 698209 37 97.3 35 .................A................... AACAACTACCTCGGGAACATGGATGGCACGGTCAA 698281 37 97.3 33 .................A................... GAGGAGGGGCTGCGCAGGGCCCTGAAGTCTGAC 698351 37 97.3 34 .................A................... GCGTCCGGGCCCGCCTGGAGAACCACGGGGCATT 698422 37 100.0 32 ..................................... ATCCCCTCCTGTCCCATCCTCCCCACCACCAG 698491 37 100.0 33 ..................................... AGCGAGCTGGGACTCCAACTCCCGAACGCGGGA 698561 37 100.0 34 ..................................... CAGCGCGGCCGTCTGCGCTGGTGCTCCGGAGGGC 698632 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 698703 37 100.0 34 ..................................... CGTGCATATTCACCGGCACCCCATCTGTCCCCTT 698774 37 100.0 33 ..................................... TGCACCGCCTCCTGCGAGGCTGCCGCGCAGCAG 698844 37 100.0 35 ..................................... TCCTCGCGAGTCGTAGCACCTGGGCGGCTCGCGCG 698916 37 100.0 36 ..................................... AGCACCCAGCGGATGCCCTGGGCGAGCTCCTCTTCG 698989 37 100.0 33 ..................................... ATAGACGTCGTAGGACTGGGCGAGCGCGGGGGC 699059 37 100.0 34 ..................................... TTCGAGCCGTCGGTTGTGGGGGACCTGTTCGGGC 699130 37 100.0 33 ..................................... TTGATCGAGCAGCTCAACGGGAAGAGCACGATC 699200 37 100.0 33 ..................................... CGCCCCAGCTTGCAGGCCGAGGAGCCGCAGTGC 699270 37 100.0 33 ..................................... GGAGAGCAGATGCGCGGCTGGTCCCTCATGGTG 699340 37 100.0 32 ..................................... GCAATCTGACGGTGAAGCCTGGCGCCGAGCTC 699409 37 100.0 35 ..................................... CCATCCGAACCGACACCTACCACCTGACGTGCAAA 699481 37 100.0 33 ..................................... CTGATCGAGCAGCTCAACGGGAAGAGCACGATC 699551 37 100.0 33 ..................................... CGTCCCACGGCAAGCCCGTCCCAGTGGCGCGTA 699621 37 100.0 33 ..................................... TCCCCAGCAGAGGCTCTTGAGGCCGCCTACGTG 699691 37 100.0 35 ..................................... TCCACGTCGCTGGGCTTGGGCCAGCCCGGGAGCTG 699763 37 97.3 33 ............................A........ GACGCAATCCGCGTCGATTCGTCCAAGAGGAGG 699833 37 100.0 35 ..................................... TGCACCACGGGGATGCCGAGCGCCGCCACCCGAGC 699905 37 100.0 35 ..................................... GGGACGGTCCACTTCTTCGAGCCCCAAGTCTACGG 699977 37 100.0 33 ..................................... ATCGCCGTAGATGGTCGCCAGGGGCCCGGCGCA 700047 37 100.0 33 ..................................... TTGATGCCGACCCAGCAGACCGCGCAGCGCTCA 700117 37 100.0 33 ..................................... GAGTGGCCCGGGAGGGACGGCGTGGCTGACTGG 700187 37 100.0 33 ..................................... TCCAGCCCGCGCAGACGGCGGGCAACGTCCGCA 700257 37 100.0 34 ..................................... ATGAGTCGCTGGCGCACCACATCCATGTCGCGCG 700328 37 100.0 34 ..................................... CCAGGGGTCGGAGCACACCCACGACAATCCAGCC 700399 37 100.0 34 ..................................... ATGGAGCGCGGACAGGTTCAGCTTGAAGCCCTTG 700470 37 100.0 39 ..................................... TGAACCCGCCCACGGGCGTCTGCTGCTCGCCACACGCGC 700546 37 100.0 34 ..................................... CCGATTCCTGTCGCACTCCGATGGCCGATTCCGT 700617 37 100.0 33 ..................................... GTAAAGCGAGGACAACAGCGCCACCTGGATGCG 700687 37 97.3 33 ..............................G...... CGCGAAGATCGCCTGCTAGACGAAGGTTGCCGG 700757 37 100.0 35 ..................................... TGTCCGTCGACGTCGAGCGCTTCGAACGTCACGTT 700829 37 100.0 34 ..................................... AGCATTCACCCGGCTGCTGTCACGGTCGTGTGGA 700900 37 97.3 33 .....................A............... TGGTCGCTGATGCTTGCGCCGAGCGCGGAGAAC 700970 37 97.3 34 ..............................C...... ACGTCCAGGTTGCTACGGTCGGTGATGGCGGCCT 701041 37 97.3 33 T.................................... TTGTAGACGAGGTATGCGGCGGCGGCGAGCGCA 701111 37 97.3 34 .......................A............. GTCGCAGATCACCAAGTCTGCTTCGGGCGGCTTC 701182 37 97.3 32 ...........................A......... TCATTCGCCTCGCCGGCCTTCTGGGCCTTGTC 701251 37 97.3 35 ........C............................ ATGATGCTCGTGGACAAGGACCCGGCCGCCAGCGG 701323 37 100.0 34 ..................................... GTCAGTGCGCACCGCAACGGCCTGGCGCCACAGC 701394 37 97.3 36 ......T.............................. CGTGCAGTCTCAAACCAGTCTTTGCCCGACCGGATA 701467 37 94.6 34 ...A...............A................. CTGAACGCCGCCGCCGGCGTGCTGTTTTCGAGGT 701538 37 94.6 31 .......................AT............ TCACCCAGCAACGTGGGGGAGTACCGGAGGG 701606 37 97.3 35 ..........A.......................... ACCGCTGACTCCGTGGACCTCGCGTACCTGGGCCA 701678 37 100.0 33 ..................................... CGCGAGGCGCACCGGGTGGTGGACGGGTGGGCG 701748 37 94.6 0 ......T............A................. | ========== ====== ====== ====== ===================================== ======================================= ================== 58 37 98.8 34 GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Left flank : TCCCTTCGCGATGCGCTGATGCGTAGATTGACCGTGCTGATTTGTTACGACGTGCGGGTGTCGGACCCACAGGGGCCTCGGCGCCTGCGCAAGATTGCGCGGGCTTGCAGAGACCATGGCGTGCGAGTGCAATACTCCGTCTTCGAGTGTGTCCTGGAGCCCAAGGACTGGGTCGTCCTGCGCGCCCGCCTGCTCGGCGCATTCGATTCGGAATGCGACAGCCTGCGCTTCTACTTCCTGTCGGAGGACGATGCCCGGAAGACGGAGCATCATGGCGCCAGAGCACCCTTGGACGTCGAGGGGCCGCTGGTCCTGTAGGCCTCCGCGAACCCGTCCCGGTGTACGCTCCGCCGAGGGTTCGCGCTCATTGAAATCCCGAATAGAATCATGGAGTTGGGTGAGTGGGCGTCAGGAACGGCGAGGCGCTTTCGTGGCCCCGCGGGCCGGTTCGCGAAGTTCGGCCGGATTCCGTAGTCAGAACGGTATGTTGGAAGGGCAGA # Right flank : CCACCCAGAGCACTGGAGTCCCGGTGCCGCGTCCTGCTCGTTCCTCATGAACGCGAGTACTCTCTCTCTTCAACGGGTCCGAAAATTGGGGAGCAGATCACGAGGACTCGCTCATGCTCAGGCTCCAGAAGTCGCCGGGCATACCCAATCCACGGCACTTCTGGCTCGAGGTTTTCGGGGATGGCCGTTCCAAGCGCAACGGCTCGTCTCTATCCAAAGCGAACGCGGCCGACGCCCATCGGCTCACGATGCTGCTCATCGCCGCGCGCCGGTTGGACGAATACAAGGAAGATCACAGCGCCCTCCTCCCGTCGCACATGACCGGCAGGTGACGATGTTCGAATCCACCGTGGACGGTCGGCGCACGCGTCTGACGTTGGACAGCGACACGCCGCCCGACATCCTCCGCTTCATGCCGCAGGTGGCTGCCGCTTACGGCATCGAGCTTTGAGCACGAGGACCCCGGGCGCCCCAGGGTTGGAGGAACACCTCCGTCTCCT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCTCGTGAACGCGGGGAGCGTGGGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCTCGTGACCGCGAGGAGCGTGGGTTGAAAC with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //