Array 1 1935-579 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDS010000027.1 Neisseria sp. ZJ930 Scaffold25_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1934 32 96.9 34 .....T.......................... AACATCCCCCATTTCAGCGCAAGCTAAAATGTTC 1868 32 96.9 34 .....T.......................... CAAACAGATACTATTTAATAGACACGGGCGTTGC 1802 32 96.9 34 .....T.......................... GTTTTGAACTTTGAGAAAAAAAGTTCTGAAGTGG 1736 32 96.9 33 .....T.......................... TTTGCGTGTGCGTCTGTCTAAATGGTGCCGCAG 1671 32 96.9 34 .....T.......................... ATCTTGAAAGCCATACAAATCCAGCATGGCAAAG 1605 32 96.9 34 .....T.......................... ATGCACTGAAAACCACGCACCGGCCATACACGAC 1539 32 96.9 35 .....T.......................... TTGAGCAAGTAATACAGACAAAACCGGTATCTTTT 1472 32 96.9 34 .....T.......................... CAAACTTCGCTGCTTATTCACGCCTTGGGCAAGC 1406 32 100.0 35 ................................ AGGAATAGGGGCGGTTTCAATCGTTAATTCATTTA 1339 32 100.0 34 ................................ ATAAAGATTTGGCAAAAACCACGCCAAATCTTTA 1273 32 100.0 35 ................................ ATGAATTGAGTCTTGAGCCCGTATGCGAGGCAGCT 1206 32 100.0 34 ................................ TTGCAGTAGCTCGCTGTATTGAATGATGTATTCC 1140 32 100.0 34 ................................ CCGAACCGGGAACGCCAGTAATCAAAGTAATCAT 1074 32 100.0 35 ................................ AAAACACAAGGAAAAAACCATGAGTAAATATATTG 1007 32 100.0 33 ................................ CTTATACGGATTGAACGGCAGACCGTTTTGAAC 942 32 100.0 34 ................................ GACTATGTTGTAAATGGCATCGAACTGAAAGAAA 876 32 100.0 35 ................................ AGCCCGTTGACTGTTGCGGTATACGACCGCGGTAA 809 32 100.0 34 ................................ AACAGACCGCTTGACCCGGACGCACCCGCGCTAC 743 32 100.0 35 ................................ AGCCGACCGACTTTGTCCCTACTCTGGCCGAAAAG 676 32 100.0 34 ................................ GACAAAATGTACACCGGAGGCATTGGCGCGGTGC 610 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 21 32 98.8 34 TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AATAAGGGGAAATACTGTGCTGATGCTGATTACTTACGATATTGCTTTGGACGACCCGCAAGGCCAAGCGCGCCTGCGCCGTATCGCCAAACATTGCTTGGACTACGGCGTACGTGTGCAATATTCGGTGTTCGAGTGCGATATTGCGCCCGACCAATGGGTTGTTTTAAAAGAAAAATTGTTGAAAACCTATAACCCCGAAACCGACAGCCTACGCTTTTACCATTTGGGCAGCAAATGGCGGCGCAAGGTAGAACACCATGGCGCAAAAGCGGCGGTGGACGTGTTCCAAGATACGCTGATTGTGTGAATCGCTAACCTGCGGTGCTCATAAAAATGCGGGCAGGTTGGCGAAACAGGAAGGCTCTTTAACAATCAGGAACTTAGCAAAGCGTGTATGGCGGGAAAAGGTTGTGCTATACTCACTTTGTGTCTCTTTCGGCGACTTTGGCGATTTAGGGCTGTCGAAGCCTTGAGCGGTAAGGGTTTCCGAGGAGGCG # Right flank : ATTCTCCGAATAAAAGTATTATAGTTAATTAAAATAAAAACTACTCATTAGTGCGGCCATAAAATTGCCTATTTCAGGCAGCACTTTTTGTAGATGCTTTTTAATGTTCGCCCATGCTTTTTCAATCGGATTAAGCTCTGGCGAATAAGGTGCAAGAGCTAAGATTTTATGCCCCTCTTTTTCTGAAATCTCTGCTATAGTCAATCTCATGAATTTAAATAACACTCCTAAACAACTCATCCACAGACACCACCCCAAGTTTTCTCCGTCTCGCCTTTAACCAAGCCCATTTCTTTTCGATGGGATTCAAGTCGGGGCTGTAAGGCGGCATCCATAGGACGGTATGCCCCATCTCCTTCAGCAAGGCTTCTGCCTTACCCTTATGAAACGCCGCATTGTCCATCACCACCACACTCTCGGGCGGCAGTTGCGGGATCAGTAACTGTTCTATCCAAGTGTCGAATATCCTGCTGTTGATGGAACAGTCAAACAAACCGACC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : TCAGCTGCCTTCGGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 39505-36430 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAKDS010000010.1 Neisseria sp. ZJ930 Scaffold8_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 39504 35 86.1 30 A.......-.TT...T.................... AACGTGGACGGCCTGTTCTTGTGCTTTGCT T,AT,C [39485,39498,39501] 39435 36 100.0 30 .................................... TCTGGCAATCGGAAACAGAGAGGTAAAAAC 39369 36 100.0 30 .................................... TGCCGCTGGAGGGTTCATGTCTGCCGAAAC 39303 36 100.0 30 .................................... CGTGCAGTTTTTTGACAATACGCATCCCAC 39237 36 100.0 30 .................................... GCTCGGATATGTCCGGTTTCTCCGGTATCC 39171 36 100.0 30 .................................... TAACTCGACTAACATAAAACGAAAGGAAGA 39105 36 100.0 30 .................................... CCACCTATCGTGCATATCTTGGTTGGTCAA 39039 36 100.0 30 .................................... AGGTAGCCCTCGCTCAAGTTGATATGTAAG 38973 36 100.0 30 .................................... TGCGACAATACGTCCCTGACGACGAGATGA 38907 36 100.0 30 .................................... TTCCTGTTTTCTGCCCGCGCGGCGGCATAC 38841 36 100.0 30 .................................... CTAGTCAGGGCGGTATTACGGGTGGCGCGG 38775 36 100.0 30 .................................... ATCCGTACCACATAATACAGACGCTGCTAC 38709 36 100.0 30 .................................... TACGTCCGCCGTCCATACTGTTATGCTCGC 38643 36 100.0 30 .................................... ACGGTTTACGTTATTACACAAGCGTTCATG 38577 36 100.0 30 .................................... AACTCGCCCCAGTCGCCACGAGAACGCCAA 38511 36 100.0 30 .................................... GCAAATCCTCTACATAGTTTGAGGTATGGA 38445 36 100.0 30 .................................... AAATCCAATACGAACATGTAGGGATTGAAC 38379 36 100.0 30 .................................... GCACCTAAATCCGCCCCCAGCGTGTTGGAT 38313 36 100.0 30 .................................... AAATCCAATACGAACATGTAGGGATTGAAC 38247 36 100.0 30 .................................... CTAAGACGGACGAGCTGTGTATGAAGTCTA 38181 36 100.0 30 .................................... ATAACTATCGGTGGGAGTTAAAAAGATTAA 38115 36 100.0 30 .................................... CAAATCCTCTACATAGTTTGAGGTATGGAT 38049 36 100.0 30 .................................... TTGCGGTAGTGCTTGTAGTTCTTGGTCGGG 37983 36 100.0 30 .................................... TCCACACCCACATACCCCCCCAGCCCCCCG 37917 36 100.0 30 .................................... GCAAGCGCAAGGCACTGAAAGCGGAGTTCG 37851 36 100.0 30 .................................... CAAATTCTTTAAGTGTGGTATTCATTTTGT 37785 36 100.0 30 .................................... CAGCACGATGGATTTCCAATTCTTTTTCAA 37719 36 100.0 30 .................................... TGCTTTCAAATTCAGTTATGAACTTATTGA 37653 36 100.0 30 .................................... TACCCAATAATTTTACGTCGTCTAAATTCA 37587 36 100.0 30 .................................... TTCTTCAAAAACGCTTGTTTTTGCATAATT 37521 36 100.0 30 .................................... TATTCCTACCGTCGAAGGCCGTGTAGAATC 37455 36 100.0 30 .................................... TAAAACTTCGCCTATTGTACAACGCGCGGG 37389 36 100.0 30 .................................... CGTGCCATCTGCCGTCAACGCACCAACTTA 37323 36 100.0 30 .................................... GCCGAAAGCTGGTAATACTTCACGGCCGAG 37257 36 100.0 30 .................................... GAACATGAGTTTAACCAAGCGTGCGATGCT 37191 36 100.0 30 .................................... ACCTGCGTGTGCCCTGTCGGATAATATTTA 37125 36 100.0 30 .................................... CTAATTTAATGCCCATATTGTCGCGTCGGC 37059 36 100.0 30 .................................... GTTTGGCTTGGAGGATTGGAAGCCCCTTTC 36993 36 100.0 30 .................................... TAGGCTTTGGCGGTGTAGCAGGCCCAGCGG 36927 36 100.0 30 .................................... TGTTTCTTTCGGTGTGATAATCAGGCTGGC 36861 36 100.0 30 .................................... TTGTGCACGTGCACGGTGTCTGAATGCCAG 36795 36 100.0 30 .................................... TGCGCCCGCCGTTCATACTACTATGCTCTC 36729 36 100.0 30 .................................... TTTGTACATTCGGCGGCAGTGTCGTTATTC 36663 36 100.0 30 .................................... CATATTCAGCGTATCAACCGTTTGCTTTTT 36597 36 100.0 30 .................................... AAATAATCAACCACTTATCAAATAGCAGAT 36531 36 100.0 30 .................................... ATATTCAGCTCGTCGCAGTATGCGACGGTA 36465 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 47 36 99.7 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : ACCTGCCAGCGGCTGCCCACCGGCCAATCACGCAACTGATAATCCGACAACATCAGCCGATATTCGCCGCCATCTTTATCCCACACCTTCGCCGCAAACTGTACCCGCCGCTCATCACGACGCGGCAAATCGTCCACCACCACCGTCAACGCCACATCCTCCGGCCGCTCCAGCGGCCATTGCCGCCCCAACGCCGATTCCGTGCGCCATACCCCATAAGCCATACCAAACAACACACATAACAACACTGCCAATGGTTTCCAATACCAAGCCGCCAATAAAATTACCCCAAACACCGCAAGCCAAAGCCATAGCGGCGGCACCACAGGCAGCAGGAATGACACCAATACCCCGAACACCCAACACGGCAATACATAACGTAACATAAATTATTTCTCTTGTAATAGTTTTTATTATGATAAATTAGAAATAACGGATGTGCATAGAAAAAAGGCCGTCTGAAAGTTTTCAGACGGCTTTATGCTTGATTATTGATTAGA # Right flank : AAACCAAGCGAAAAGCCTTATTTGATAAGACTTTCCGCTTGGTTTTTCTAATTTAAAATCTTCTTAAAACAACAATAATTGGTCTGCATTGACCTTTTTTTCTTGTACTTTTAACTCTCCCAAAAGCAATTTCATACCGGCAAATTGCTTTTCTGTCACCTCTAAACAGCGTACAGAACCTTCTTCAGGCAAGTTCGCACACAACCTATTGTGGTATTTTTGCAACGAATCTCTACCTTTTACAATTCGGCTGTAAACGGATAATTGCAGCATTTGGTAACCATCTTTGAGCAAAAAATGTCGGAATTGGTTGGCCACTTTTCGCTTGGCTGCAGTGGTAACCGGCAAATCGAAAAAAACGATAATTCTCATAAATTTCGCCTCACTCATATTGATATGCCTTTAATGTTTGTAACTCAGGTAATTTCAAAAAACGAGCATTTTTTTGACTCAAGGCCGTCTGAAACGATGAAATCATTTTATCAATGGCTGCTAATGTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA //