Array 1 40378-39432 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTOQ01000014.1 Escherichia coli strain MOD1-EC6192 MOD1-EC6192_14_length_124665_cov_56.5535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40377 29 100.0 32 ............................. ATTAACGCGGCCCGCCTCTGCGTTGGCGTGAA 40316 29 100.0 32 ............................. CGCGTTTCTGGAACCGTAATTTGCTGCGGTAT 40255 29 100.0 32 ............................. CTATTGGCCTCACTGCCACCGCAGTTAATACT 40194 29 100.0 32 ............................. GTGGTTACCTAGTTGCTATGTGTTCGTGACAA 40133 29 100.0 32 ............................. CGCCGAGCGTGGCGCGGATATAAAAAAGCCCC 40072 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 40011 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 39950 29 100.0 32 ............................. CTCCGCTCTGTGTTCGATAAACTCATCCAGCA 39889 29 100.0 33 ............................. AATTTTCTTCATTGCTCAAACAGGCTGCATAAC 39827 29 100.0 32 ............................. GACTCAACCGCGCTTCCCGGCCTCACCACTGC 39766 29 100.0 32 ............................. GCGAAAAAATACGGCTGGATGCGACAAAAAAA 39705 29 100.0 33 ............................. GAGAAGAAGCTCCTGAGCTAACCGTTGAAGAGC 39643 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 39582 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 39521 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 39460 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 16 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGACTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 57613-55876 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTOQ01000014.1 Escherichia coli strain MOD1-EC6192 MOD1-EC6192_14_length_124665_cov_56.5535, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 57612 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 57551 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 57490 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 57429 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 57368 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 57307 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 57246 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 57185 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 57124 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 57063 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 57002 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 56941 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 56880 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 56819 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 56758 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 56697 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 56636 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 56575 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 56514 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 56453 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 56392 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 56331 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 56270 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 56209 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 56148 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 56087 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 56026 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 55965 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 55904 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 29 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //