Array 1 402651-402880 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRI010000001.1 Anaerostipes caccae strain DFI.1.3 NEHODLEK_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 402651 30 100.0 37 .............................. CACATGAATTTCGGTCGTGCACATAAATTACGGCACC 402718 30 96.7 37 .....................C........ GAAGAAACTGTTGTTCCGGTAGAAGAATTTAATCTTA 402785 30 100.0 36 .............................. TGATGAATTACTACACCTCCAATAATACTTGATTCC 402851 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 4 30 99.2 37 GATAAACAAAAACAAGAGTTGTATTGAAAT # Left flank : AAAAGCCAGGCGGTGGTTTTGATTGGGGTGACTTATCAGCAAAGAGGACTGAATGAGTGCTGTGGTTGGTGTAATCAGACAAACTGCCAGGGCTGCAGGGAGAACCAGAGCGTCTGTGTATTTGATCCGGTGGATCTGGGAATCGCATTGGGATCGGCAGTCAGTGTGGCATCCTTAAACCACGTGGACAATCGGATCATGTTTTCTGTTGGAAAAGGAGCACTATCCTTGGGGATGCTGGGACCGGAAGTGAAGATAATCCTTGGAATTCCGTTGGCTGCTGCGGGAAAAGCGCCATATTTTGACCGTAAATAACGGTGTAGTTTTCCCAACCGGCTAAATTTAAAAAGTGGTCCAAAACGTTGATTTTACAGGGGCTGCAGAGGATTTTTAGGATTAGTTTTGAAAATGGACGGCCGGTTGGGAAAAAAGCTGGAAAACGTTGAATATATCTAGGTTTAGAGATATAATGGAAACTGAAGAATGGCTTAAAAACGTTG # Right flank : TACACTTACCTCCTCTTTTGTCAAAGGACGTCCACAGATAAATAAAAATAAAATGAATAATAGATTGCTTATCTTAATTTGAATTGTTTGAAAGTACTATGAAATGTTGTATTATTTTGAAAAATATAGTAAAATAGAACAATAGAGTGGTTTGTGTATAAAAGCTACTAATGAATCATTCCCTCCAGGGCAGTCGTTACGATAGGTACTATCAGCATGTATACGATACGAGGGTGCATACAAAAGAAAGGGGTGGGGCAGTGGATTTACAAGTTTTTGAAATCCGGCTAAAAGTATATCTGTTAGAAGATATCCCTGTAGAAGCAGTTCAAAAGAAGACAGCCGCACTGATTGACATTTGTCTGAGCAGAGACGAAGCACTTCTGAAATTTCATGAGACGAATCAATTTAAGAATTATTCTTTCGGAAATCCATATCCATTGGAAAAGGACAAAATTTATAAAAAGGATAAGGTGTATGTCATAACAATCCGCACCATT # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACAAAAACAAGAGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 1 313205-312911 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRI010000002.1 Anaerostipes caccae strain DFI.1.3 NEHODLEK_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 313204 30 100.0 37 .............................. TTTTACCATGCACCTGCCTGAAATGCAAGGAGCCGAG 313137 30 100.0 36 .............................. GCCGATAGCATGGATGGAGATGCCGGAGCCGTATAG 313071 30 100.0 35 .............................. ATCTGATACTGTGTTACATTACTAACTTTGTTCCA 313006 30 96.7 36 ................A............. TGGGTAGTGTGCTGGTCTATGGCAGCAAAGTTCTCA 312940 30 76.7 0 ........GT.....AA.........T.TA | ========== ====== ====== ====== ============================== ===================================== ================== 5 30 94.7 36 GATAAACATCAACAAGCGTTGTATTGAAAT # Left flank : CTGCTGGTGAGGCCGTACAGGGAAAGCAAGAAGTTAAAGGTTGATTTGAAAGAGGTAACAGGAACAAGATAATATTGGAAATAGAGAGGTCTGCACCTGGTGTGCAGACCTGCATGATAAAGGAGGTTTCTATGGGAACAATAGCAGTAGGTTTGGCTGTCCTTGGTATTGTCAGTTTGATCGTCAGAAGCATGGTAAAGGATAAGAGACAGGGAAAGTCGATCCAGTGCGGGAATGACTGCAAACATTGCGGCGGGCACTGCGGTCATTGAGAAATGGAGAGTTGTCTCAGCTGACTACATTGAGGCTGGCTGATAATGATTGGATTTCCCAACCACAAATATTTAAATAGAATGGCAGAACCGCAGAAAATGGTGGTTTACAGGCGATTTGAAAGAAAAAACAGAAAATATGAAGGTGGTTGGGAAAAAACAAAGGAAACGTTGATTTTATCAGGGAAACTGGCTATAATAAAAAATAGAAATGGCTTAAAAACGAGG # Right flank : AAGATCTTCTTTCTATGTCCAGGAGACAGAAATTATAATTTCTGCCTTCTATTTTTTTGCCTTCTGTCTGCTGAACCACACCAGTCCACAAGCTGCCGTTTTTATGTTATGATAAAAGAGCAAAACACAAAGGAGGAGCTATGAGATTTGGTTACGATATCCCGGATTCTTTTTGGAGCCTGTTCCGTTCTGTAAACCGGGATCATTACATAGAAGCGCTGCTGAAAATCAGTGAAGAATATGAATATAACAACTACTTTCTGAGCCGGGAGGTCTGTATTCAGGTCCTGAGCGACTGGAATGCGGACAAGCGCATCTGGCTCCAGCGGGAAGAGTTTGAATCAGAACTGGATGTACTGGAGACTCCCCCAAACCGGATACTAAACTGGCTGATTAAGACCGGCTGGCTGAAAAAACTGGATGACTTTTCTACGCTGACATCCAACATTGTCATTCCCGATTACGCGGCCGTTTTTCTCGATGCTTTTGAACAGCTCGTG # Questionable array : NO Score: 5.80 # Score Detail : 1:0, 2:0, 3:3, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAACATCAACAAGCGTTGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.20,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 2 416886-417111 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRI010000002.1 Anaerostipes caccae strain DFI.1.3 NEHODLEK_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 416886 30 100.0 36 .............................. ATTATCTCGGGATGAAGGCACAAGAAGACTTGCAAA 416952 30 100.0 34 .............................. GTATACAGATTTCTAAATTTACTGCGACTACTGA 417016 30 100.0 36 .............................. GGTCTTTGACAATGTGACGATCCGGGAAATTACAGA 417082 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 4 30 100.0 36 GTAAATATACAACTCTTGTTTTTATTTATC # Left flank : TTTATGAGAAGGTAATGGAACAAACGGTAGAGATGGATCTGGGGGTTCATGTTTCTTTTCAAAATGGCCTGTCTCTGCAGTCTAACTACGAAGAATTGGTCGGAGTGAAACTGGAGCCTCAGGAGAAACCTGATAATTTTCAGCTTTATTTTGAAGTGGAAGATTTGGACGCCTGGGAAGATAAGCTGAAAGCTCTGGAAGGGATTGAATTTCTCCATGGAATCAAAGAATATCCATGGGGCCAGCGTGTTATGCGGTTTTATGATTATGACAAATATATCGTAGAAGTGGCAGAGAGCATGGAAAGTGTTGCAAAACGTTTCTTGTCACAGGGGCTCTCCGCAGAAGAAACTGCGGAGCGAACGATGCTTCCGGTTGAGTTTGTTGAGCAGTTTTTATAAATGTATCGAATCAATAGGATATGAAAAAGTAAAAATTTAGGCATTGAGTTTCTTGTGAAATTAAAGAAGCTCAATGCCTTTTCGTATTTTACATTTGTT # Right flank : CCAACGTATTTCTGCCATTCCTTATTTTTATTATAGTCATTTTCCCTGATAAATTCAACGTTTCTCTGAATTTTTCCCAACCGTTTCTGTTCTTCCGGCATTTTCTTTCGAATCGGCTGCCAACCGCCATTTTAAGCGGTCTCCCGGCATTTCGTCTCTTTTTGAGGTTGGGAAACACAATATAAGCCGACCATCCGGCAGCCCTTATTTTCCACTATCTGAATTGATTTGTCTCAGGATGATATTCATAACCGATACCCGAAAGTTTTGTACTGATCTCTCCTGAGTCTACACACAGACTCTTGCAAAGTTCCTCGAAACTGTCATAATAGTCCCTCAGCTGTGTATTGATGTAGCTTAACAGTATCACCGGATCATTCGGCAGCATTTCTTTTTCCTCCTCACTTATGTCACAACCACAAAAAAGCAGTGTTCTTTTCCAAATTCATAATAAATCTTTTGTTTTTCAATGTGATGAATCACATAAATCAGCCCAAAGC # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAAATATACAACTCTTGTTTTTATTTATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 1000856-999565 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAJCRI010000002.1 Anaerostipes caccae strain DFI.1.3 NEHODLEK_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1000855 32 100.0 34 ................................ TTACCGACTGCTTACTGGGTAAACGGAGATACAG 1000789 32 100.0 35 ................................ CTCTTGGAATGGCTTTAGGAATTGAGAAAAACGCC 1000722 32 100.0 34 ................................ GTGTAAAATTTATGTTCGCACTCCAGACATTTTC 1000656 32 100.0 34 ................................ TTTAAGACGGTGTGACATATCCTCAAAATACAGT 1000590 32 100.0 35 ................................ TGTTTATACCAGGAGTAAATATCATTACTTTGCTT 1000523 32 100.0 35 ................................ AGGTCGGGTTTGGTGATGTCGCAAAAACATACACC 1000456 32 100.0 34 ................................ ATAAGAGAAGACTTAGGATTATCTCAAGCAGGCC 1000390 32 100.0 34 ................................ GTAAAATCTCCTGTCCAGGCTAAAATGTCTTGGT 1000324 32 100.0 35 ................................ GCCACTGTTGCGAAAGAGGCAGACGTAGACGAATA 1000257 32 100.0 34 ................................ CTGTCAATACAAAGGATTTAATACAGATCCATGG 1000191 32 100.0 34 ................................ GTGCACATCGTTAGCAATACTTTGTCTTTACTAC 1000125 32 100.0 34 ................................ TCCGCTATAGAAAAGGAGGCAAGTATGCAGAAAG 1000059 32 100.0 34 ................................ AGATCTGGCGATAAACCGGACGGACGACATAGGC 999993 32 100.0 34 ................................ ATAGATATTTTGTTTAAACCGGTCTGTTGTGATA 999927 32 100.0 33 ................................ CTTAGAGATATCTTTCATTGTTGCTCCCCGCAC 999862 32 100.0 35 ................................ TACATATTTAATAATATTACCAGGCTGCATATCTA 999795 32 100.0 34 ................................ ACCGTGGGAAAAGAAAACACGGTCAAGGGCTTAG 999729 32 100.0 34 ................................ AAAAAAACAGGATGCCTATAAAAATGCTGTAGAG 999663 32 100.0 35 ................................ ATTAATATCACGACTGAAGGATTTGTCAGAGAAGG 999596 32 78.1 0 ......T...A..A.....AA..C....G... | ========== ====== ====== ====== ================================ =================================== ================== 20 32 98.9 34 GTCGTTCCCCTCGTGGGAACGTGGATTGAAAT # Left flank : TGCATATCCGCCTTTTTTATGGAAGTGAGGTAGCAAACGTGTTAGTGTTAATTACTTATGATGTAAATACAGAAACATCTGCGGGAAAGACAAGGCTTCGGAAGGTCGCTAAGCAGTGTGTGAATTATGGGAGACGTGTACAGAATTCGGTATTTGAATGTATACTTGACAATGCCCAAAGCGTGCTGCTAAAGTCTATGCTTACAGATATCATAGATGAGGAAGTAGATAGTTTACGGTTTTACTACTTGGGAAATAATTACAAAACGAAAGTAGAACATGTAGGTGTAAACCGTGGAATTGCAGCGGATGAGACATTAATCTTATAGTGCGAATTGGAAGTGAACACGAAAACCCAGGGAGGCTCGCACCAAAAAAGTTGCACAAAAACAGTATAAATGAAAAGAAAAGTTATCGGTTTATGAATTGAAGATTAGTTGTGGTTAGCGAAATGATACAAATTAAATATATATGTGGAGGTATTTTTGTTGAATTTTGCT # Right flank : TCATACCAGAATGAATAAGTGATGAAGAATAAGACTTTTCATTTTGATATAAAAGGAAGCATATTCAATGGGGATTAAAGGAATCATGCAGGCCAGACATATTCTATTACTTGCGTCAGGAAAACAGAAAGCCCAGGCTCTGTATGAGGCTGTTTACGGTGATATCACACCGGAAGTCCCGGCATCTATCCTTAAATTACATCCCCATGCTGCCGTATTCGCGGAGGAGGCTCTCTCTGTGATCAAAGAAAAATCTTGAAAATAAAATAGTTTGTTGTTCCTTTGTTGACATTCTTCATGTAAGATAAACCAGAGGTGATAACAATGAACTATAAGATTTTACTCGTCGACGATGACAAAGATTTATTACAGATGCTCCGTAGCTATTTTGAACTGAAGGGCTATCTCATAAAAACAGCGGTCAACGGACTGGAAGCTATGGAGCGGATAAAGGATGCCCCGGATATTATCCTGCTGGATGTCAACATGCCGGGGCTTGA # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCCTCGTGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.40,-5.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //