Array 1 188750-188602 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLV01000107.1 Escherichia coli strain EETUKB204 NODE_274_length_301931_cov_52.454563, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 188749 28 100.0 32 ............................ TCGACGGGGTGCGGTAAAACCTTTGCGAACGC 188689 28 100.0 32 ............................ TTCACAGGTAACATACTCCACCCGCCCACCAT 188629 28 78.6 0 ................A...A.A.A.TG | ========== ====== ====== ====== ============================ ================================ ================== 3 28 92.9 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TAAATTCATCGTCGAGTTGCAGGTTCAGCTGGATCAGAAAGGTGTTTCTCTTGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCAGGTAGGTTGGTGAAGTCCGTAATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGTGGAACGGTGAAAACCCTATTTTTGGAGGTGAAGGTAAGTTGTTGATAATTAGTGCTGCTGGAAGGTAAGAATAAAAAAGGGTGCTGCAGGAGAATGGGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : CGAAAAAAAAGCTCGCACTTTCGTACGAGCTCTTCTTTAAATATGGCGGTGAGGGGGGGATTCGAACCCCCGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTACCAAACCTCATGGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTTAATGATAATTATTGTTTGCTCATACTGTAAACAAGTTGTGCAGTATATCTACATCGAGACAAGTTACGGACTTATACTTCCAAAATACTTCATACATATCACAAAATAAAAAGGCCGGTTAAACCGACCTTTTACTCGTTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGT # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43106-44000 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLV01000062.1 Escherichia coli strain EETUKB204 NODE_104_length_111094_cov_78.925354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 43106 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 43167 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 43228 29 100.0 40 ............................. NNNNNNNNNNCGCGCGCGGGCTACTGCACTCGGTGATAAC 43297 29 86.2 36 .........................NNNN NNNNNNATTTGCCAAATTACGGACCTGATGCTGGGT 43362 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 43423 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 43484 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 43545 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 43606 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 43667 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 43728 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 43789 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 43850 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 43911 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 43972 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ======================================== ================== 15 29 97.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACATTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 69701-70110 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLV01000062.1 Escherichia coli strain EETUKB204 NODE_104_length_111094_cov_78.925354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 69701 29 93.1 39 ...........................NN NNNNNNNNTTTTTACTGAAATGACGGCTCGATTTACAGC 69769 29 100.0 32 ............................. CAACGGAGGCCCAGGGCGTGCCGGTTTCGAAA 69830 29 96.6 40 ............................N NNNNNNNNNGGGTAAAGTCTCGGCTGAGCGCGTATTGATG 69899 29 100.0 32 ............................. TGTTTCGGTTATCAGTAATCCGGTAAACGCCG 69960 29 96.6 32 ............................C ACAACATCAGGATTGCGATCCGTAGCGTTACC 70021 29 96.6 32 ............................T GTACCGTGGCAATAATTCTCTTGAGAGCATAA 70082 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================== ================== 7 29 97.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCGGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCTCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCTGGTTGCGGAAATGTGGTGATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTTTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGGACGGCAAAACAATCGGGAGTCTGGATAAGTGTTCCCCGCGCCAGCGGGGATAAANNNNNNNNNNGGGCGAAAGTGTCGATTCTGACACGATAGTGTTCCCCGCGTCAGCGGGGATAAACCNNNNNNNNNNAACACACTTCCAAAATTCAACGGTGACGCCGTGTTCCCCGCGTCAGCGGGGATAAACCGCCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTTGTGTTCCCCGCGTCAGCGGGGATAAACCGAGGGCTGGTGGATTCGGGTAACTGGTTTGCTGGTGTTCCCCGCGTCAGCGGGGATAAACCNNNNNNNNNNGATATTTCTGGCGTTGGCCTGCGCGTGACGTGTTCCCCGCGTCAGCGGGGATAAACCGCAGATACCTTGTTTTGTAACTGCGTTAATGTCGTGTTCCCCGCGTCAGCGGGGATAAACCGCCAGTGGATTGAGACCACATACCAAATCACCGGTGTTCCCCGCGTCAGCGGGGATA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 70275-71534 **** Predicted by CRISPRDetect 2.4 *** >NZ_SQLV01000062.1 Escherichia coli strain EETUKB204 NODE_104_length_111094_cov_78.925354, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 70275 29 100.0 32 ............................. CCGCTTCCCCGCTGGCTGTGTCTCGTCTCGTT 70336 29 100.0 32 ............................. AGGGCTGGTGGATTCGGGTAACTGGTTTGCTG 70397 29 96.6 38 ............................N NNNNNNNNNGATATTTCTGGCGTTGGCCTGCGCGTGAC 70464 29 100.0 32 ............................. CAGATACCTTGTTTTGTAACTGCGTTAATGTC 70525 29 100.0 32 ............................. CCAGTGGATTGAGACCACATACCAAATCACCG 70586 29 100.0 32 ............................. GATTTACAAGAGGAACGATCATGACGGGTTTA 70647 29 100.0 32 ............................. GAAAATGCTCTTTGAAAATGCAATGCCCCGCG 70708 29 100.0 32 ............................. CAGACCCAGCGTGCCGCCCAGCGCCCGCGAGC 70769 29 93.1 37 ...........................NN NNNNNNNNCCTTTAAGCGCCATACCATTTCACATATG 70835 29 96.6 32 ............................C TAATTTTATGACAAGCGGTGGTGATGCTGAAC 70896 29 100.0 32 ............................. TATTCGGTCACTCCCACAAATTTCCCAGGCCA 70957 29 100.0 32 ............................. ATTGCATTAAAGAGATCATGCGCGCCCAAAAT 71018 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 71079 29 100.0 32 ............................. TCAAAAGATGAAATTTTGCAAATCAGGGCAGC 71140 29 100.0 32 ............................. TTGCTCATTGCGAATCCCTCATCTGGCCTTAT 71201 29 100.0 32 ............................. TAAACGCACCTGGCGCGCCACTTTATCAACAA 71262 29 100.0 32 ............................. GACATCATTTTCACAGCGACGCAAACAGCCGT 71323 29 100.0 32 ............................. ATCATCCTTGCTGCGACGGACTACAACCGCCG 71384 29 100.0 32 ............................. GTCCAACGACATGAGGCGGTGGAACGATACGT 71445 29 96.6 32 ............C................ TCAGCAACAATTATTTTCGTCGCATCGTCATA 71506 29 96.6 0 ..................A.......... | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 99.0 33 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CCCGCGCCAGCGGGGATAAACCGCAACGGAGGCCCAGGGCGTGCCGGTTTCGAAAGTGTTCCCCGCGCCAGCGGGGATAAACCNNNNNNNNNNGGGTAAAGTCTCGGCTGAGCGCGTATTGATGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTTTCGGTTATCAGTAATCCGGTAAACGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCCACAACATCAGGATTGCGATCCGTAGCGTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCTGTACCGTGGCAATAATTCTCTTGAGAGCATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGGACGGCAAAACAATCGGGAGTCTGGATAAGTGTTCCCCGCGCCAGCGGGGATAAANNNNNNNNNNGGGCGAAAGTGTCGATTCTGACACGATAGTGTTCCCCGCGTCAGCGGGGATAAACCNNNNNNNNNNAACACACTTCCAAAATTCAACGGTGACGCC # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACACCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAACTCCTTCACCAGAGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGTGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //