Array 1 67405-65240 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWX01000016.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT388RV NODE_16_length_90916_cov_21.7587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 67404 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 67343 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 67282 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 67221 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 67160 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 67099 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 67038 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 66977 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 66916 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 66855 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 66794 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 66733 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 66672 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 66611 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 66550 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 66489 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 66428 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 66367 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 66306 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 66245 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 66184 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 66123 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 66062 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 66001 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 65940 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 65879 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 65818 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 65757 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 65696 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 65635 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 65574 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 65513 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 65452 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 65391 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 65330 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 65269 29 96.6 0 ............T................ | A [65242] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 85598-84167 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYWX01000016.1 Salmonella enterica subsp. enterica serovar Montevideo strain 11TTUT388RV NODE_16_length_90916_cov_21.7587, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85597 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 85536 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 85475 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 85414 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 85353 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 85292 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 85231 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 85170 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 85109 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 85048 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 84987 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 84926 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 84865 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 84804 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 84743 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 84682 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 84621 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 84560 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 84499 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 84438 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 84377 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 84316 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 84255 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 84194 28 89.7 0 ............T...........G-... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //