Array 1 22457-26184 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEO01000010.1 Salinivibrio kushneri strain IC202 scaffold10.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 22457 37 100.0 37 ..................................... TCGCGGTAACAGGCCGCCAGTGGTCATCGTGCTGTTT 22531 37 100.0 36 ..................................... TGGTTGCCACCTTCCTGGTTGGCGGCCTGATTGCTG 22604 37 100.0 34 ..................................... AAGTCGTTTAACCGCGTACTGTCTAAAGCAATCG 22675 37 100.0 34 ..................................... TATGTGGTTCAGGTGATAGGTGAGTGGGAAGACG 22746 37 100.0 34 ..................................... AAGTAAAATTAACAAAGGCGATATTAATACATTA 22817 37 100.0 35 ..................................... TACTACACAGAATTCGGCGTGTCACAGCAGCTAGT 22889 37 100.0 34 ..................................... GGAGGCATTCGATGTCCACGAAAATCAGCACTGG 22960 37 100.0 38 ..................................... CCGCGCCCGCTGATTCGTTGTCGCCGTCACTACTGGAT 23035 37 100.0 35 ..................................... GAGAAGAAAAACCCCGCCACCAAAAAGAGACTTGA 23107 37 100.0 37 ..................................... ATTAACCCGAGCGGGATCTGCACAAGGTTGGTTAGTC 23181 37 100.0 36 ..................................... GCCAGACTCGTAGAAAGTAGCACAACCAGCTTTTGA 23254 37 100.0 35 ..................................... ACGTGAATGTCTTGCCGGCGCCACGGCCACCCCAG 23326 37 100.0 36 ..................................... ACGACGGCATCAGCTTGATAGGTTTGTACACTAGAT 23399 37 100.0 35 ..................................... CTTGCTCTCTTCTTTGTCCTTGGCTTCCTTGTCTT 23471 37 100.0 35 ..................................... CTGGATAATTAATCGAACTACCGATAAAGACGCCT 23543 37 100.0 34 ..................................... GAGTAAGTTGTTGCCATTTTACATTTCCTCGTAC 23614 37 100.0 37 ..................................... CGACCAAGGCGCAGAAGATGAAGCGCTAGACCTGCTC 23688 37 100.0 36 ..................................... CTTGCCGTCTTCTTTGTCCTTGTCTTCGTCTTCGGC 23761 37 100.0 35 ..................................... ATATAACCAATATCGAGGCACACACCGCCGTCACG 23833 37 100.0 34 ..................................... TTTGCCTTCTTTGTCCTTGGCTTCCTTGTCTTCG 23904 37 100.0 37 ..................................... CTTTCAAGGATTTGGCGTTCTGGGCCTTTTCAGGCGA 23978 37 100.0 35 ..................................... ATCCACTGTATAACCCGACGCCATAGGTGTCAGGG 24050 37 100.0 35 ..................................... GCTTCTCTATCGACGCTTCAATCTCGCTTTTAATC 24122 37 100.0 34 ..................................... TGAATCCTGAAGTGCCTATCACCGGCGAAATGTT 24193 37 100.0 35 ..................................... ACGCTTTGCGCCGCTCGGAACGCGACAGAGCCTTG 24265 37 100.0 36 ..................................... TGTTTAATTCTAGCTTTGCAGGCTTGGTAGGCTTTG 24338 37 100.0 36 ..................................... ACCGATACCGTGGTAGAGTTCGACAATCCAGAGGGT 24411 37 100.0 36 ..................................... ATGCTCAGCACTTCGACGTTAGTGTCGTTTGGCAAA 24484 37 100.0 36 ..................................... GCTTTTTGTGCAGCCATGATCTTGTCGCCTTGCTCT 24557 37 100.0 36 ..................................... AAACCGTCTGCATCACCGGATTGCCTTCATCGTCCT 24630 37 100.0 34 ..................................... ATCAAACCGAGCGGAATTTGCACAAGGTTGGTTA 24701 37 100.0 35 ..................................... AGTACACTCCTTGCATCTTCTACTGTAGATGCGCC 24773 37 100.0 35 ..................................... ATGTAGCTAATATCGAGGCACACACCGCCGTCACG 24845 37 100.0 34 ..................................... AAGCCTGACGACGAAGAGGACGAGAAGTCCGAGT 24916 37 100.0 36 ..................................... TTCTGCTTCTAGTTTGTGCAATTCTCTGCCGTCATC 24989 37 100.0 33 ..................................... ATAGATGCAGATACGCTGTTTAGTGCCGCGCGA 25059 37 100.0 35 ..................................... TAGCGCTGGCAAGGCTTACATCAAAGTAGGAGCGG 25131 37 100.0 35 ..................................... AGCTATTCCGGCTAATGTTTTCCGACTCTTCGCAA 25203 37 100.0 37 ..................................... AGTTTGAGGCGTTGTCCGGCTGCGTGTCGTTATTATC 25277 37 100.0 38 ..................................... CATCCTTGAGGGTGAGCTGCCGCTGGACGGTAGCCGGT 25352 37 100.0 36 ..................................... TGAGTGGTCAGCTCCATTTGAAGCTGCTGCATTTTC 25425 37 100.0 37 ..................................... TCGGGTAGCGCCGTAGCGATGCGCTGGCCTGTTGATC 25499 37 100.0 35 ..................................... ACCCTGCTCTGGTGGGCTTTCATTTGACACGCATC 25571 37 100.0 36 ..................................... CAGGACTCGGGCGTCATTCGTGGCGCTCAGTTTTTT 25644 37 100.0 35 ..................................... CGCACAAGACCAAGGAAGCGCTGCACGACTGGATT 25716 37 100.0 34 ..................................... ACCACAGACCCGCTATCACGGCGGGTTTTTCTTT 25787 37 100.0 36 ..................................... GATCTGGCTGATGCCTTTGAAGATATGGACGCGGCG 25860 37 100.0 38 ..................................... AAGGCCATCAATGATTCCTTGGCTTCTTTGCGGATTTT 25935 37 100.0 34 ..................................... ATTTAATTTTGTCGTCAGCGATTACAGGTGTAAA 26006 37 100.0 34 ..................................... GAAATATCCTGTGACATTGTCACTGCCTCCTGTT 26077 37 100.0 33 ..................................... GTTGTTCGACAAAAAACGAATGCAATCTTGTTT 26147 37 83.8 0 ......................AA....AC..C...T | A [26172] ========== ====== ====== ====== ===================================== ====================================== ================== 52 37 99.7 35 GCTTCAGAGCCTATCTCAACAAGTCAGCCACTGAAAC # Left flank : AACGCGCATGTGCAAGCGCTATCGTTAGGTATTCATGGTTATATCGACGAGCTAATCTTCAATGAAGAAAAGTGTGTGGTCGTGGAGTATAAAGTGGATAAGGGTAAACCTACCGATGCGCAAAAGGTCCAACTGTACGCCTATATGCTTGCTGCGGAGCAAACTTATCAACGGCAAGTGGTTGCGGGCGTATTACTAAAAGGCAGCGCAAATAAGCAGTACACGATCACGCTAGATGATAAAATAAAGAACAAGTGCCTAACCACACTCCATGCGGTGAGGCAAACACTCTCCAGCCATCGTATGCCGCATTCAAGCGCAACAGAGAGCAAATGCGCACAGTGCGAGTACTTGAGATACTGCAATGACAGATGAAGATTATTTTGGTGTCAGCGCTATGTTCGCAAAATATAGCCATTTTATGACATCAAAGCGGTTTGCGAAAAAAATAGGCGCTGAGCCCCTAATAACTTGCTGTATCAACAACAAAAAATCAGGGG # Right flank : TAAATGTTAGACTAGCCTCGATTGACAAGACTTAGTTTGGGTACTAGCTTTATGCCCCAACCCCGATGGAAGGTGCGCCCCTTGGGCAATTGGAGCCCAAGCCGACGCAGCCATTGGGGCTTTTTCTATTCCTCTCCCCTAGTCCAGCGTTTTTAGCTATCTATTTGTCACCTGATTTATTTTGATGCGAAACAGCAATAGTAGTTCGTTCTTGTTTGACTAAGTGTTTGACTAAAAATCAGCAGGCACAAAAAAGGCGTAGTAGGTACTAACCTGCTACGCCTTGCTATAACTGGTGGCCCCTCCCAGACTTGAACTGGGGACCAATCGATTATGAGTCGACTGCTCTAACCACTGAGCTAAGGGGCCGAATGGAATGAGATTATAGGGGAAGGCTCACAGGGTGTCTAGCTGTAAGGAGGGCGAATTCAGTATGCTTTTTGAGCACTTAGCGTGTGGCAGGATAAACAAGCGCCGCCAATGTGGCGGCACTCACGCTT # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAGAGCCTATCTCAACAAGTCAGCCACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 2455-1644 **** Predicted by CRISPRDetect 2.4 *** >NZ_MUEO01000015.1 Salinivibrio kushneri strain IC202 scaffold15.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 2454 28 100.0 34 ............................ CCGAACGCGTTAAGCTCTTTGATTAGCTCGATCA 2392 28 100.0 32 ............................ AAACTATAAAGCACTGCCTCAATGGAAGTTAT 2332 28 100.0 32 ............................ GCCATAATCTCCTATAATTATCTATATCGAAA 2272 28 100.0 32 ............................ TCGCAAATACATCTTTAATTTTTTGGTTTTTT 2212 28 100.0 33 ............................ TTTCCGGTGCAAGCGACCGGTTTTGAGTTTAAT 2151 28 100.0 32 ............................ GTTCCTTGCCAACGAATACGACAAGCATCAAC 2091 28 100.0 32 ............................ GACGGCCAATTTACTTATTTCCGTTTCGGTGA 2031 28 100.0 32 ............................ TGGCGGTGCCGTATTCTTGCGCTATGGCTTTT 1971 28 100.0 32 ............................ GCTCACCTCTCCACCTGGCGAATTGACCTCGA 1911 28 100.0 32 ............................ GCCGGTTTGGTCACCGGTGGACTTTCCTTTTT 1851 28 100.0 32 ............................ TCCAATTCTTCGAGTGTTTCCATTTCACGGAT 1791 28 100.0 32 ............................ AACAGCCACAGGTCCAAGCGCCTCTACCAAAG 1731 28 100.0 32 ............................ TGAACTTCACACCGGGCCTCGAAAACCAAGGT 1671 28 85.7 0 .....................G...GTG | ========== ====== ====== ====== ============================ ================================== ================== 14 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTGTCACTGTTGTCACTTTTTGGCTGATTTAAGTTTGTACTGTGTCTTACAATGGCTACGCATCACGTGCCTCGAACGCAGGGCGGTGTGTTTAGTTTTGCGCCCGCGAGTCCGTTCACGCCATACTTTGAAGCTCCGCGGTTTTAATTCACGTCGCATTAACGCAATCACATCGTCTTGGCGTAGGCCATAGAGTGCTTCAATCGCCTCAAACGGGGTTCTATCTTCCCACGCCATTTCTATAATTCGGTCAATCTCTCCCGGTTGTTCGTTCAATGCCATGTCGGTCTCCTTGTACTGGTGGCCAATAATACGCGTAGAGTCGGAAAAACCGATCAGCGTGTTCCTTCTAACCCATCAATGCTGTTACCCTTGTTTTTGGGCTCTTTAAAAATAAACAGCAAATACAGATAGTTACGGAAAGCCATTTTTAACAAGGGTAAAAGATGATGTTTATCCTAACGGCCTGTTGTCACTGACAATTATTACGTTATTCTATT # Right flank : ACACAAGCCCCAGCACGATGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCAGGGGTTAATAGTTGGCTCCGATGTCGGATGGCGCGCGGCGAAAGTCATACCAAGTTTGCACGATCGAGTTGGCGCTTATGCCGACCTACGCGAACTTTAACGTCGGTGGTGCCATTGGCGACCGAGACACAAGCCCCAGCACGGTGTTGGATAGGGGGACATTGCCAACGGGCGCCTGTCACGATCGAGGTTAATCGTTGGCCTCAATGTCGGATGGCGCAGTGCAACTGGCGCCAGTTGCACTGCGCGCGACGCAAATCACACCTAGCTTGTACGATCGAGTTAGCGCTTGTCCGACCTTGTATCTCTCCTGGAGTTGAGGTTAGCTACCTCTGTTCCGGTGAGTTTGGTGATGCTGAGTCCGACCTTAGCACCTGATGCTGTTATGTAGATCAGCGCCCAGACTCTTTTGTTCTTATACATTGAATGGTATCCAAGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //