Array 1 359582-358454 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030142.1 Leptospira mayottensis strain VS2413 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 359581 29 100.0 32 ............................. TAATATCAATCAATTCGTTTCGTCTGTTAAAA 359520 29 100.0 33 ............................. CACTTTGATCATCAATTGCTCTAGCTACCTTGA 359458 29 96.6 32 ............................C AAATAAATAAACGTAATACGCATCCGCTATAA 359397 29 100.0 32 ............................. CTAATACTATGAAAAGGACTCACAACTCGAAA 359336 29 100.0 32 ............................. GCTATGGAAGAGGAAAAAGGTGGCGAAGGTCA 359275 29 100.0 32 ............................. TGGTCACTCCTCGGATTTCTTTCTGTAGTCCT 359214 29 96.6 32 ................C............ AATTATATGATCGCATAGGATCGACTGTAAAA 359153 29 100.0 32 ............................. GAAGCGATTTAAACCATTCTACGATCTCATCG 359092 29 100.0 32 ............................. TTTTCCCATCCTTCGCTTGCGCGTTTCATTTG 359031 29 100.0 32 ............................. CGAGAAAACGCACGCAAAACGCAACTGAAGGA 358970 29 93.1 32 .........G......C............ TGGGAGTTGGAATAACCGGTTCCCGAATTTTG 358909 29 100.0 32 ............................. TTGATCCAGTTTTGATTGGTACCTCTATTTTA 358848 29 100.0 32 ............................. CACGTATTCAGATCGTATCCACTATCCAATAA 358787 29 96.6 32 ................C............ ATAAAGCGGTAGAATCAAATTAAGTTTTGTCG 358726 29 93.1 32 .........G......C............ GCCCTCAATACCCCAGCCGAGTTCTGCGATTG 358665 29 89.7 32 .........G......C........G... GCCCTCAATACCCCAGCCGAGTTCTGCGATTG 358604 29 93.1 32 .........G......C............ GCCCTCAATACCCCAGCCGAGTTCTGCGATTG 358543 29 93.1 32 .........G......C............ TGTTTCGGCCCCTTTGTGAAGATTAATAATTT 358482 29 79.3 0 .........G.........A....C.TTA | ========== ====== ====== ====== ============================= ================================= ================== 19 29 96.4 32 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : GAAATGCTTTTTCAGGATTGTATGGAAACGACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTTATAACATTCAATTCATCTAATTCCGATATATATAATATTATGATAAATGATTTCTCTCTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCGTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAAATGGCAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGC # Right flank : AAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTGATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCGTATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGCGAATGTAAACCGAAAGAATGGATCTGTATTTTTACAACTCAAACATCTATGTAAAAGCAGGAGATGACGGTTCCAAAGCGAGAAACCTTCCTTATCGTTTACCTT # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : CTTTTCCCCGCACACGCGGGGTTGAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 596984-597368 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030142.1 Leptospira mayottensis strain VS2413 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 596984 29 100.0 22 ............................. GATACGACGCCGTTGCACGAAT Deletion [597035] 597035 29 100.0 32 ............................. ATCGACATCGTTCGCGATCTTTCACTCTGGGA 597096 29 100.0 32 ............................. AATGTGACCCGGAGCCACTGCAACTTTTTTAT 597157 29 100.0 32 ............................. GACGTTAATTCTGAGTCCACAATGATTCGAAA 597218 29 100.0 32 ............................. CATTTCTTTTGTATACCCTGCCTCTTCTTCCA 597279 29 100.0 32 ............................. GAGCAGAGTGGCTTGCGATCTATGATCATAAC 597340 29 79.3 0 .........G.........A....C.TTA | ========== ====== ====== ====== ============================= ================================ ================== 7 29 97.0 30 CTTTTCCCCACACACGTGGGGTTGAACCG # Left flank : AAATGCTTTTTCAGGATTGTATGAAAACGACGCATTTTGTTCTATGCGCACCCTCATTTCTGCTCAATGAACTGCTCAGAAATGCGATCGTCCCCACAAGTCTAAAATTTAAAGATCGAAAGATAAACCTATTCTAATTTTTTTATAACATTCAATTCATCTAATTCCGATATATATAATATTATGATAAATGATTTCTCTCTTTCCGAACAAGCTTGTTCCCAATCCTTTCAATATATTCAGTCTTCTTTCTTTAGATCCGAAATTCTTTTTTACGACGATTTGTTTCGCGAGATAATAGATTTTGAAGGTTTATCTTTAGTGCCCAAGCCAAGTCCAAGTCAGAAAGAACCTTAAATGATCTTTCAAGGTCCTTAGAGATGACAGTTCTTCTTTTACAAACCTAATCGATTTTGTGAACAAAAATACAAGATCAGATCATCTTTAAAAACAAATTCTAAGATGACATAATATGTAAAATACTATACGAACTTTTAGCC # Right flank : AAAAGTTACAGAGAATAAAATTTATCTTTGTTAAATTGAGAATTTTTACAACGTAGAATCCATGAATTCAACTTTAAGTTTTTGATATTCCTATTTTGTGGAAATTTCACTTTCGCAAAGGTGAATGATGGACTTAGGAATTACGATCGGAACATAAAGAATATATCTTAAAAGTCCTTTGTTTAATCTCGAAAAACGAAGTTTCAAAACGGAATAATACTATTTAGAAGCCAAAAAGTTTGAAAAAGAGAAGTGGTAAACCAAAGATAATGATGATTTACTAATTTATAGCATATTGGAAATGATGAAATTGATATGCGGAATTTTATTGTCGTTTTAATTTTTACCGTATTTACTTTTTCCGGTTTATTGGCGAAAACTTCCGATTTCAACGGCGAATGTAAACCGAAAGAATGGATCTGTATTCTTACCCGCAACGAAAATAACAAAGTAGAATTTTACGTTCAAAACCAAACACCTTCGGGAGAATATCCTTTTAT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCACACACGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTTCCCCACACACGTGGGGTTGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 1806420-1805780 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP030142.1 Leptospira mayottensis strain VS2413 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1806419 29 100.0 32 ............................. AGAAACATAACTCAGGATTTTGCATTTTAAAA 1806358 29 100.0 32 ............................. ATGATCCTAACATGATCTCTGATGCTAAACGA 1806297 29 100.0 32 ............................. ATCCAGCATAGAGATATTAGAACAAACTAAGA 1806236 29 100.0 33 ............................. ACATTCAATTTCGGCCTTCTCAAGTCGAGTTGC 1806174 29 100.0 32 ............................. TTTGACCGTGGGATTCCTGTTTCAATCGCCAG 1806113 29 100.0 32 ............................. AAAGGGCGATCACAATAAAATCAGAAAACCCA 1806052 29 100.0 32 ............................. TTTTTTTCCGTTTTTGATTATAGTTACTGTGA 1805991 29 100.0 32 ............................. GTCGGGTTTTCCTCCTTATGCTCGCGAAATCG 1805930 29 100.0 32 ............................. TTACACTCTCGTTTAAGGGCATTACGAAAACA 1805869 29 100.0 31 ............................. AAAACTTTAGAAAGTATTCGTTCGGAACTAA 1805809 29 89.7 0 .........................G.TT | T [1805784] ========== ====== ====== ====== ============================= ================================= ================== 11 29 99.1 32 CTATTCCCCACATGCGTGGGGTTGAACCG # Left flank : TACTTAAAAGAATTATTCCGGATATCAAGGAGTTGATTTATGGTGGTTTTGATTTTGGAGAGAGTGAAGACTTCTCAGAGGGGAGAGATGTCGCGGTTAGCCATTGAACTGAAGCCGGGCGTTTTTGTAGCTTCCATTAACGCTAGAGTTCGAGATCAAATTTGGAAAAAAATTTCCGAAGAATGGAAATCGGACGCGATCATGTTGTATTCGAGCAACTCGGAACAGGGTTACGGCATCCGCTCTCACGGCGATCCTTCTCGCGAGATTATGGACTTTGACGGTTTACTTCTAATGTCCAAACCCGATTCTAAACACGATCAGAAAGTAGTCATGAGTGTTTCCGATTTTTCTAAGGTTACCGAAGACGAAGTTTCTCCTTTTTCAGATCTTAAAGGCTTTTTCAACGAAAAGGCAAACTCCCTTCTTTTAGAAGCAGATGATCCTAATGAATCTAAAGAACAGACATAATTCTTAAGACTCCTATACAAACTTTTAGC # Right flank : TCAATTCCTAACCGGTGTCGGATTTCTATTTTTTATATATGTAAGGTGAATCAGAGGATCAAATTTTTTACACGTGGATTACTAACTTTAACGATTGTACAAGTAACTTGGTCCGCAAAATTCGCTCAAAGATTATAAGCTGGAAAAAATCATAACGAAATGTATCGCAGAAGAACAAATCCAGAAGACATACAAGGAATCTGAATCTAATTATAAAAATTATTTCCTTTAAAGATTTCTTGAATTGTTTCAAACTTTAATATAAATTTTCCTTTTATCTAAGAAACTTAAGATTCCCCACCAAACAGACAAATGAAGAACCGCGTATAACAACGATGCAAGATACGGATCTGCAATGAAAACAAGTTTAGAAAAAAACCAGGTTTTGATCCCAATCGATTTTCCATTTTCTGACATGATTGTCCAAAGGTTGAGAGTCCTCGCGAGTATTCCGGAGCCTACAAAGACTAAAATCGCATTTTTACCGAATACAAGTAACG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATTCCCCACATGCGTGGGGTTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //