Array 1 95608-97038 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVP01000006.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU450x NODE_6_length_302609_cov_16.2162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95608 29 100.0 32 ............................. CCAAATGGCTAAGTGGGGCGTTGGTGGGCGAA 95669 29 100.0 32 ............................. GCCGCTCCGATACGCATTGCGGCGGGGATAAA 95730 29 100.0 32 ............................. GCAAAATAGTCACCTTGCAGGCTGATGTCAGT 95791 29 100.0 32 ............................. TTGAAGACCGCGCTGATGCAATCCGCCAGGCG 95852 29 100.0 32 ............................. TCGGCATTGATCTTGTTCAGTTCAGCCGGTGA 95913 29 100.0 32 ............................. TGACCACAGGTTTTTCGTCTGCTGATGTCGGC 95974 29 100.0 32 ............................. GACAAGCTGGAACGTGATCGGCTTACTGATGA 96035 29 100.0 32 ............................. CGCCGTAAATTGTGGTACGTCGTGACTACAGA 96096 29 100.0 32 ............................. GCGACCTGCTCGACAGCATTCAGTTTGTTGTT 96157 29 100.0 32 ............................. GCAGCCGTGCGCAAGCGTGGCCTGACGATGAG 96218 29 100.0 32 ............................. TGCTGTTTGCAGACCACACAGGCGACAAATTC 96279 29 100.0 32 ............................. AGGGTGAACGAAGTCACTCTTAAATTTCTGAA 96340 29 100.0 32 ............................. TATGAATTTAATGTTTATCCTGGGCGCTATGA 96401 29 100.0 32 ............................. GTTAGGGAAGGTACTCCTGGCTAATTCTTTTG 96462 29 96.6 32 ............................A TTAGTATCAGTATAAATAACCACGTATTCACC 96523 29 100.0 32 ............................. TATGAGCCGATCTGGAACGTGAGCGCTGAAAC 96584 29 96.6 32 ....A........................ AGTTCGGCAGGTTTTAGTTCCGTCGCGTTTGC 96645 29 100.0 32 ............................. AAAATATAAAGTATGTTTTGTTTAATTCTAAA 96706 29 100.0 32 ............................. GCAAAACTCCCCAGATACCGCGCATCGGCACT 96767 29 100.0 32 ............................. ATAAATTATCGGGAAATCATAATCAGCGCCGC 96828 29 100.0 32 ............................. TCGAGTTCTGGCACGTCAGACTGACGTATCGC 96889 29 100.0 32 ............................. AAAACCCTCAAATATGCGTAACGGGAGGCTGG 96950 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 97011 28 89.7 0 ............T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCACGAAGTGCGCTGTACGCCTAACACCTGGGTAACGGTTTCACCAAAAGTGAATATGCGCGGGGGATATGACGTGCTTTCCCAGGCGCTGGAGCGCGCCAATGAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATGCATTACTAATTTTACGGACGGCCTGCCGATGCCGTCTGTGAGTCATCCATTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 113801-115965 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYVP01000006.1 Salmonella enterica subsp. enterica serovar Montevideo strain 10TTU450x NODE_6_length_302609_cov_16.2162, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 113801 29 100.0 32 ............................. CCCTGGTTAATGATGGTTGTCAGCTTAGCCAG 113862 29 100.0 32 ............................. GTGGCAGCTGAGAACCCGGAGGTTATCCGGTG 113923 29 100.0 32 ............................. GTGCCGTGTTTGAAATTCCCAACGATACGTTG 113984 29 100.0 32 ............................. GCGCGGCTCGCATGTCAAAAATTGTCGATACT 114045 29 100.0 32 ............................. TGGCAAACGAAAGGCCATGTTGGCATAAGTAG 114106 29 100.0 32 ............................. ACGTATTACGTTTATGTCCGCACCAAAAATGC 114167 29 100.0 32 ............................. AGACATCAATTACTCAGGACGGGATGATGTTT 114228 29 100.0 32 ............................. TATGCTGAATTACAGGAAGGCAGGAAGTACGC 114289 29 96.6 32 ............................T TACCTGGTTGAATTCGGTCTGACTCCGGCCGC 114350 29 100.0 32 ............................. GCGCCCGCGGCGATTTAGCATAATCTGCAGTT 114411 29 100.0 32 ............................. GAGGGGGTTTCTTCATCGTCTGATGAAAACGG 114472 29 100.0 32 ............................. TCGGATGCATTGGGAGCGGGATTGCCGGAGCC 114533 29 100.0 32 ............................. GCTTCCCAACCTACCTGGAGCCAGGCGCGTTC 114594 29 100.0 32 ............................. CGGGCGCGGTCGAGAAACCATGCCTGCTGATA 114655 29 100.0 32 ............................. CCATATACAGTGGCGAAATTCCTTTTCCTCTT 114716 29 100.0 32 ............................. CGCAGGCAACGCTTCCCATTCCTCCTGCGACA 114777 29 100.0 32 ............................. CAACAGCCGGGAAAATGAAGGCTGAAGGGCAA 114838 29 100.0 32 ............................. AATCTAATTATGACGGCAAGGCGACTACTAAA 114899 29 100.0 32 ............................. AATAATCACATCACCATCACGCGCGACAACAT 114960 29 100.0 32 ............................. CGGTCTCCAGATAATAGCCGATTTATTTAAAA 115021 29 100.0 32 ............................. GCCCGCATTAAGCCGCTGACGCACTGGATCAA 115082 29 100.0 32 ............................. CGCTCGCAATCGAGGTTTGCGCCGAGTTGCGT 115143 29 100.0 32 ............................. GGCAATCATTAACAGCGCCGTTAATTCAGCGA 115204 29 100.0 32 ............................. GGAGACGAGAAAATCTTTAATAGTCTCAGCGT 115265 29 100.0 32 ............................. CCCGCAATCTGCGGGCGTTCTCGTCAATTTAC 115326 29 100.0 32 ............................. GATTGGCCCTTAGATAACGGGAGATCAAGCGC 115387 29 100.0 32 ............................. CATAACCTTCGCTACCACACTTGCCGGTACTT 115448 29 100.0 32 ............................. CCTTGAGGTTAGGGGAGTCAGGAAATTGCATT 115509 29 100.0 32 ............................. ACAAAATCGGCGGCCCAATCGCCGGCGCTGAC 115570 29 100.0 32 ............................. GCCTGCCGTCTTTTTATTGAGGTCTGTAAACC 115631 29 96.6 32 ............................T TAATCATTTTGTTTAAATCCCGGATCACCTCC 115692 29 100.0 32 ............................. GAGTTATTGTCACTCGTCAGTGATAATTTTCT 115753 29 100.0 32 ............................. CCCGTTGAAGATCTGGACGCATGGGGCAAAGC 115814 29 100.0 32 ............................. GTGAGCTCGGTTTTAATTTCGTCGCTAAGGTG 115875 29 100.0 32 ............................. CAAAAGGCCGACAGTGTGTACACCTCTAAAAA 115936 29 96.6 0 ............T................ | A [115963] ========== ====== ====== ====== ============================= ================================ ================== 36 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAATTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGTTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGTGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //