Array 1 1-1618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZC01000001.1 Bifidobacterium merycicum strain LMG 11341 Contig01, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1 34 94.4 30 --.................................. AAAACAAAACCGACAAACTTACAAAGGGTC 65 36 100.0 30 .................................... ACACCCGATACCTTATGAAAAATTCCGTCA 131 36 100.0 30 .................................... GACCGCGCGCGCCGACAATGAAGTTCCACG 197 36 100.0 30 .................................... GGTGTTGTCGCCTATGAGATAGTATCCTTT 263 36 100.0 30 .................................... TACAGCCCGGTAAAAGGGGATGTTGCGTTC 329 36 100.0 30 .................................... TTCGATGATTCCGGCCTGCGCCGTGATGCT 395 36 100.0 31 .................................... TACCCTATCGGATTATCCAAGTACCAACGCT 462 36 100.0 30 .................................... ATATCGAGAACGGTTTGCAATGCCGCTTTC 528 36 100.0 30 .................................... TTTAGCAGTAGCACTAGCCCTACAAGATGC 594 36 100.0 30 .................................... TCTGAGTCGTTTCGACCTGCTCGTAATCGA 660 36 100.0 30 .................................... TGGCCTTGAGTGCGGCGATATCCTTTTCGA 726 36 100.0 31 .................................... CCAGATCTTCAGCACCACCAACACAGACCAT 793 36 100.0 30 .................................... TACTAGGCAAGTAGAGAGGATATGACCATA 859 36 100.0 30 .................................... GTATCCGGAACTTTGTCGATAATAATGATT 925 36 100.0 30 .................................... CGTGGCTTCCAACGTAAGCTCTGTGATTCG 991 36 100.0 30 .................................... GCTGAAACTGATTACCAGCGAACACCACGA 1057 36 100.0 30 .................................... CAAGGGCGTTAAACCCGTGTTCGAAAAGAA 1123 36 100.0 30 .................................... AGAGACGACACGCCGTGTGGTGTTGACGTG 1189 36 100.0 30 .................................... CCCATTTCTGTGACTTAGCCTCTAGTGTTT 1255 36 100.0 30 .................................... GTGATTGTGAGCGAGTACACGTGTCCAGAG 1321 36 100.0 30 .................................... AGCTGGTACTAGCGTGACTACCAACCTTGT 1387 36 100.0 30 .................................... CGGTCATGCTGTGGGATTGCGCATTCTGCG 1453 36 100.0 30 .................................... CCGGTAGAGTTTTCTTGATTTTCCTCATTA 1519 36 100.0 30 .................................... AACAAGGTGGCCGAGGCCATCTACCTGCGC 1585 34 91.7 0 ...........................T.--..... | ========== ====== ====== ====== ==================================== =============================== ================== 25 36 99.4 30 GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Left flank : | # Right flank : CATGGGGGTGTGTTGGGGCCGTAGGGGATGTTGGTTTCAGAGGTGACAAAGAAGAGTCTTTTTTTGAGCCGATTGTCGCTAGGAGCCGTTCTTCTCGTCTCGGGGGGCTATTGCAGTGTTTGCGACCTGTTGTCGAGTCTTTCCTTCTATATCACATCGTTTACTTATATCGGGCTGGTCATGGGAGCGGTGACAGGCGGAATTTTGGGGCTTATTTTCCTTCCTGTAGCTCTTGCGGAAGTGGTGCTCATGGTTGGAATCGCGTTTTGTCTTGGACCGATTGCTCAGACATTGCTCTCGTCAGTGTTTTTCGATGGAGGTCTCGGTCGGCAAATTGTATTGCTGCTAATGAAGACTGGTTCAGCGCTTCTTTCGATTTTGCTTTGCTGCACTATTGTCGACATGTATCCCAAGTGCTATGGATTTGTTTTTGGCGGAACAACAATTAGCCAATCGATTATCCTATTATGGCTTCGGTATACGATGCCTGCTCTGATTTT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 197943-202006 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGZC01000004.1 Bifidobacterium merycicum strain LMG 11341 Contig04, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 197943 36 100.0 30 .................................... CTCTGGAATGGTCGAACGTGTCATCCTCTA 198009 36 100.0 30 .................................... TCGAACTGGTACGACTGCCACACGTCCAGT 198075 36 100.0 30 .................................... GACGTTTACCGGGGCGAGCATGGCCAAGTA 198141 36 100.0 30 .................................... TCACCGAGCGCCTTGGGGTGCAGGTATCCC 198207 36 100.0 31 .................................... CCAGGACTTTTGCAACACTATGGTCGCGCTT 198274 36 100.0 30 .................................... ACCAAGTCTGGGCGAACTGCTCGACCTGCT 198340 36 100.0 30 .................................... GGAATTCGCCCCCGAGTTGGTCGGCAGCGA 198406 36 100.0 30 .................................... CGCGACACGCCGACAACCGGCAAATTCACT 198472 36 100.0 30 .................................... CGCATACTAGAGAGAGGTAGGATATTATCA 198538 36 100.0 31 .................................... TCCGGCTTATCGTTGTCGGAACCGTTGCGGT 198605 36 100.0 30 .................................... CCGCGCTGTTATCATCGTCCCCGAGGCGTA 198671 36 100.0 30 .................................... GTTGCGACGAACACCTATGATTTCGATACG 198737 36 100.0 30 .................................... CCTTGCTCGACCTTATCCAGGACACTCATA 198803 36 100.0 30 .................................... CCGCATCAGGCTTCACCCGATAGAAATCGA 198869 36 100.0 30 .................................... ACGTAACCCCTCATGTCCTGTAGCTTGAAT 198935 36 100.0 30 .................................... GAGTTCAATACTTCTTCTCGTGTCGCTTTC 199001 36 100.0 30 .................................... CGAGCTCGTCGAAATCAGCGTAGTCTATCG 199067 36 100.0 30 .................................... TCATAAGCACACCTGTATACATCATTATGA 199133 36 100.0 30 .................................... TGAGCCTCGCCTATAGCGAGCTTCCGTCCT 199199 36 100.0 30 .................................... TTCTTTTTTAGCAACCAAAAATACAACTAT 199265 36 100.0 30 .................................... ACATTAATGGTCGGCGGGGTGTAGTCGATA 199331 36 100.0 30 .................................... CCGCGCCGTCATCCTCGTCCCCGAAGCGTA 199397 36 100.0 30 .................................... AGACGACCATCGAACGCATGATCCTCAAAT 199463 36 100.0 30 .................................... CGCCGGCTTGAACACGATGTTCGGGATCTT 199529 36 100.0 30 .................................... CCCCCGCAGTGTATGAGACGATAAAGGACT 199595 36 100.0 30 .................................... TCTGCGTTTCGGCCGTATTGTATGATGAGG 199661 36 100.0 30 .................................... CTGACCGTATCGCGCAACCTCATCAGCCAA 199727 36 100.0 30 .................................... CGATGAGGTCTTCGAGGTACCTCTGGCTCA 199793 36 100.0 30 .................................... ATTGTGGAAGGCCGATAATCAGGGCGTGAC 199859 36 100.0 30 .................................... CAAATTTCTTCAAATATTCCCATAATTCCG 199925 36 100.0 30 .................................... AGACATTGTGAACGTGTACGCGGTGCGCAT 199991 36 100.0 30 .................................... TCTCGGTTTCAGTCGCACGCATTGGTCGTG 200057 36 100.0 30 .................................... GAGGTGACTGTCGGAGAGAGGGAGGATGCA 200123 36 100.0 30 .................................... CGTGAGCGTGAACGTCAATGTTGATACGGT 200189 36 100.0 30 .................................... GGAACGCCGACGACGAGTATCGAGAAATAA 200255 36 100.0 30 .................................... TGACCAGACGGGTGTACATGCGGACTGCGG 200321 36 100.0 30 .................................... AGGACGTGTTCGCACTGCCACGTGTGTATG 200387 36 100.0 30 .................................... CGTTAATGGAGTAGGTTTTGCGCCTGCCGA 200453 36 100.0 30 .................................... AGACATTGTGAACGTGTACGCTGTTCGCAT 200519 36 100.0 30 .................................... TTTGAAAATCTACTCCCATTTTGAACCTTT 200585 36 100.0 30 .................................... CGGCCTGCTCGAATCCGAGCGTGTCCATCA 200651 36 100.0 30 .................................... ATCTCCAAGGCCCAGGACAAGCAGAAGACC 200717 36 100.0 30 .................................... GCGATGCCGACCTGCGCGATGCAAAACTAT 200783 36 100.0 30 .................................... TCTTGACGATGCCGTTGTTCGTCACCTCAC 200849 36 100.0 30 .................................... GTGACCATAGGCTTGCATGGTTGGCTGCGG 200915 36 100.0 30 .................................... CATGGTGCAACGCAGCTGGTTGTCCCAGAT 200981 36 100.0 30 .................................... AATCGCCCGCGAACGCCCTCAACATCCCGA 201047 36 100.0 30 .................................... ACAACCAATTGCGTTGCACCATGATCGACG 201113 36 100.0 30 .................................... GTTCCAAGCGAGCATGGTGCCGAACGCCTG 201179 36 100.0 30 .................................... TACCCGCTTCGCCATCGAACGCAGTCAGCA 201245 36 100.0 30 .................................... CGATCAGCTTGAAATACTGGTTGATGCGCA 201311 36 100.0 30 .................................... TCTTACACAGACCGAAATTGCACGAGCTCT 201377 36 100.0 30 .................................... TGGTGGTGCTCGGCGAGTATTCCGTGTTGA 201443 36 100.0 30 .................................... TTTCCCTTTCATATCAGTCGGATTCGGTTT 201509 36 100.0 30 .................................... CGGGCGATGCCGATAGCGATGAGGACATCA 201575 36 100.0 30 .................................... CCAATATCACGTCTGATGGCGTTGTGACAG 201641 36 100.0 30 .................................... TATAGAAATCCGGGGTATTTCGGATTGCCT 201707 36 100.0 30 .................................... TGTTGCCCGCATGCTAATATTGAGCCGTAC 201773 36 100.0 30 .................................... GCAGCTTAGCGGATACGCACGCGAACATTG 201839 36 100.0 30 .................................... CGGCAGCGGTGGCACCGTCACCCAGCAGTC 201905 36 100.0 30 .................................... GGCTACAGCCGGTACTCGACGCGATCGGCG 201971 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 62 36 100.0 30 GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Left flank : ATTGCGCGGGAGTACTAGATTATGATGCTTTGTTTCAAAAGGCTGCACTTAAGAAGTTAAATGACGGATTTAATCCTGAAGAATTGAGTAGATTATTGTTGTTGCAAACTGAGATAAAGTCGATTATTCAAGAAGAAATATGGAGAGAGGATTTGCCTCTGAGTATTCTTGATGAAGTTGACATAAAGTCAATGATAGCAATGGCTAAACCGCGTGTTGATACCAGTTCTCTGGGCTCTCTTTATGATAAAATTCAACTGGTAGTTGATACTGCCGGCGCTCTTGCCGAGAGCAGGATGCTTGTGATGCTTCATATAACTCAATATTGTGATAACGACCAATTACTTTATTTGCATCGAGAATTATTAAGACACCATATGCAGCTTCTTGACCTAGAATGCTGCGACAAAAAAGTCCTTTTGACAGAAGGAAGAAGCGAGTATATCGATGGAGACTATGTTCAGTTCTCATAGAACGTTCAGGATTCTCCAAGGCTATCA # Right flank : GTTGGGACTGTGTCGCATAGTTACTCATATGTTTCAGATGCCTGTCAGATCAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAGATGCCTGTCAGATCAAGGACCTAGACCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //