Array 1 52-324 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWOV01000035.1 Klebsiella pneumoniae strain VRCO0291, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52 29 100.0 32 ............................. GTCAGATCACGTCAACCACGCTTGATTTTACC 113 29 100.0 32 ............................. CTCACTAACGCCGTTGCCTGCGATAGCTGATG 174 29 100.0 32 ............................. GTGATCGGCCCGGCAATGCGTGAGCTAATCAA 235 29 100.0 32 ............................. TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 296 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCCAGCGGGGATAAACCGTTGAGTGACAGAGAGATTGACCGCCTTGTTTTG # Right flank : | # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 181986-179093 **** Predicted by CRISPRDetect 2.4 *** >NZ_FWOV01000002.1 Klebsiella pneumoniae strain VRCO0291, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181985 29 100.0 32 ............................. GCGATCATGCCGTAGTCTTCGATCACGTAATC 181924 29 100.0 32 ............................. TTTGCCTTCCTGTCTGCAGAGGCGCGGACAGG 181863 29 100.0 32 ............................. CGTAGCTAAAATTAACTGCATTCGGCGCACCT 181802 29 100.0 32 ............................. CCAGCTCAATTTCCGCCTGTCCCGCCAGCGCC 181741 29 100.0 32 ............................. AATGCAGCAACCGGCAAATATATCGCCGGTAA 181680 29 100.0 32 ............................. CCGCAATAACAAAAATAAATGAGGGTTAAAGT 181619 29 100.0 32 ............................. GTAAATGGGAATGAGTAGAAGAGCGTCATTGG 181558 29 100.0 32 ............................. ATTAAATTTTTCGGGTAAAGAGAAATTGCGAA 181497 29 100.0 32 ............................. CTGCGAGCTACCCTGAATTTCAGCGACAGGGG 181436 29 100.0 32 ............................. TAGTGCCATATATTATCCTCTGCGGTATGACT 181375 29 100.0 32 ............................. GGCATCTGTTGTGTAATGTTGAGTTTTTTTCA 181314 29 100.0 32 ............................. CAGGTTAAACATGTAAAAAATGACCGTCGCCG 181253 29 100.0 32 ............................. CACATTGCCCGGTCTGAAAAGTATTTGAAAAT 181192 29 100.0 32 ............................. CCGGAACACCACCAGTAACAGCTACTGTAGGC 181131 29 100.0 32 ............................. TGACCCTGTTGATTTTGTTACAGGTAATACGT 181070 29 100.0 32 ............................. TTAACCTCGTCGTTCTGGTTTCCGCCCAGGAT 181009 29 100.0 32 ............................. GAACCTGAATTCGAAGGGTGGGTCATCCTTCC 180948 29 100.0 32 ............................. CCGTCGAACGGCGGTTATATCCATCTTGAGTC 180887 29 100.0 32 ............................. ACCGATCCCACAATTGCGGCGGTTGAGATTGA 180826 29 100.0 32 ............................. GTTGTCAGTCAGGGAAAATCTATCCGCAGGGG 180765 29 96.6 32 .G........................... TTGAGTGACAGAGAGATTGACCGCCTTGTTTT 180704 29 100.0 32 ............................. AACTGAATGTTCCAAATCCGGTTGGACGACCA 180643 29 100.0 32 ............................. TTCAGCAGCGCGCTCGTCCCCCTCCTGTCGGA 180582 29 100.0 32 ............................. CTCTACTACGATAACGGATCCCACGCGGGCTG 180521 29 100.0 32 ............................. GCTGCCAGCCCATTCCGTAATTGCCTGTTTCA 180460 29 100.0 32 ............................. GCGAATATAGGCATTAATGCTTTTAATAATAT 180399 29 100.0 32 ............................. CTCCGTCACCAGTTCTGTGCTATCCGGCACAA 180338 29 100.0 32 ............................. TCACGTTTGCAGAACTCGCGGAGGAAGAAGAA 180277 29 100.0 32 ............................. GATCCCCCGGAGGAGACTGATCAAACCACTCG 180216 29 96.6 32 ............................C CGCTGGTTAATGGGCTTCCCGGAAGGGTGGGC 180155 29 100.0 32 ............................. TCTATCGCAACCACCGCTGAGGCGCTGATTGA 180094 29 100.0 32 ............................. CCGCTCCACGGTGAGCGGCTGTTCAATGTAGT 180033 29 100.0 32 ............................. CATCACGCGCTGGCCAATGTGTTAAACCAAAT 179972 29 100.0 32 ............................. GGCATCATTCTCTTCGCTACTCCCGCCGATCA 179911 29 100.0 32 ............................. CGGAAATTTTGATTAGTTGAATCTGTGCCATT 179850 29 100.0 32 ............................. CCGACTTGGGACGAGGATCCGGCGGAATGTCG 179789 29 100.0 32 ............................. TAATGGCAAAACCATGACCTGATCCGGGCGTC 179728 29 100.0 32 ............................. CCTGAATCTTCACTTCGTCGATCATTCTGCGC 179667 29 100.0 32 ............................. GGTCAAAAGGTTCATTCGAGCATCGAGTTGCA 179606 29 100.0 32 ............................. GTAACGCAGACGGCGAACGTCGGATCCATTGG 179545 29 100.0 32 ............................. GACCAGAAAGCCTGGGCATTGTTCCGCTCATT 179484 29 100.0 32 ............................. CCCCCGGCCGCGTGGCCGATTGCCATTACCGC 179423 29 100.0 32 ............................. TTAATACCAGGGGGCAGGTTCAGCAGGTCCCC 179362 29 100.0 32 ............................. CCGCTTTAACCCGCTCCGGCAGATCCGGGTGA 179301 29 100.0 32 ............................. CGCGCTGCGAATTTGTTGGTCGATTTCGATCT 179240 29 100.0 32 ............................. CAGACAGACAGCAGGCAGCAAACAGGGAAGAC 179179 29 100.0 29 ............................. GGGTTCACTTGGGTGAAACTGAACTAACT 179121 29 75.9 0 ...........ATTC...A......G..C | ========== ====== ====== ====== ============================= ================================ ================== 48 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGATGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTTGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCACGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGTACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGCGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTAGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATACAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //