Array 1 1-334 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQK01000056.1 Salmonella enterica strain CVM 43767 43767_contig_56, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 62 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 123 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 184 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 245 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 306 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : | # Right flank : | # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 326-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQK01000059.1 Salmonella enterica strain CVM 43767 43767_contig_59, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 325 29 100.0 32 ............................. AAAATGAACTCACCGCCTACAAAGACCAGTTG 264 29 100.0 32 ............................. CCAATACGTATACTGACAACAGTATTACTGAC 203 29 100.0 32 ............................. TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 142 29 100.0 32 ............................. GTAATCCGCGCTTACGATACAATGATGGTCGC 81 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 100.0 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GCGGGGATAAACCGCCGCGCTGGGCCAGCCGCATAACGCTGGAAA # Right flank : GACGACGAATGCAGCGCAGACTACTGGCGCTGACGTGTTCCCCGCGCTAGCGG # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5650-6653 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQK01000038.1 Salmonella enterica strain CVM 43767 43767_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5650 29 100.0 32 ............................. TTTTGTTTAATTCTAAAACGGGACAAATGGAA 5711 29 100.0 32 ............................. GGAACAACCATTCCCTCAATGAACGGGTTATT 5772 29 100.0 32 ............................. CGGACAGGCCTGCCAGTCGGGCAATATCCGTC 5833 29 100.0 32 ............................. TTGACGGCCTGGCAGCGCGTGACGTTATTAGC 5894 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 5955 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 6016 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 6077 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 6138 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 6199 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 6260 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 6321 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 6382 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 6443 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 6504 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 6565 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 6626 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 22923-25208 **** Predicted by CRISPRDetect 2.4 *** >NZ_JYQK01000038.1 Salmonella enterica strain CVM 43767 43767_contig_38, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 22923 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 22984 29 100.0 32 ............................. CACATGCACCTTTTGAGCCAGTAATTGACAGG 23045 29 100.0 32 ............................. CTTGGAAAAGACAACAATATATTGGTAAATCA 23106 29 100.0 32 ............................. GTCACGTACTAGTGACGACATAGACAGACTGG 23167 29 100.0 32 ............................. CGGCGGGACCCCGCGATTTTCTCCCTGACGAA 23228 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 23289 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 23350 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 23411 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 23472 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 23533 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 23594 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 23655 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 23716 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 23777 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 23838 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 23899 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 23960 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 24021 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 24082 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 24143 29 100.0 32 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTG 24204 29 100.0 32 ............................. GCCTCTGTAATTGATTCCAGCGTTATTTGCTC 24265 29 100.0 32 ............................. TCTAATGCTTCAATATCAATCATTATGTTATT 24326 29 100.0 32 ............................. CCCGAACTGATTGATGCCATCAGTCAGGGGGC 24387 29 100.0 32 ............................. TGTGGTGGATCACCGAGTGTAGAAAGCGGCCC 24448 29 100.0 32 ............................. ATGATCGCGCCCTCATCTCCCCAGATTTTTGA 24509 29 100.0 32 ............................. GCAAAACGTCTGCAATGCCTTTTTTAACAAGA 24570 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 24631 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 24692 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 24753 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 24814 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 24875 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 24936 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 24997 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 25058 29 100.0 32 ............................. AATGTTGCACTCACCTCTCTCGCCACAAAACC 25119 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 25180 29 96.6 0 .............T............... | ========== ====== ====== ====== ============================= ================================ ================== 38 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : CCGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //