Array 1 302728-304220 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXB010000001.1 Salmonella enterica strain 69 NODE_1_length_473022_cov_250.153832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 302728 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 302789 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 302850 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 302911 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 302972 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 303033 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 303094 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 303155 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 303216 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 303277 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 303338 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 303399 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 303460 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 303521 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 303582 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 303643 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 303705 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 303766 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 303827 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 303888 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 303949 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 304010 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 304071 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 304132 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 304193 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 320352-322255 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACRXB010000001.1 Salmonella enterica strain 69 NODE_1_length_473022_cov_250.153832, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 320352 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 320413 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 320474 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 320535 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 320596 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 320657 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 320718 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 320780 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 320841 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 320902 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 320963 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 321024 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 321085 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 321146 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 321207 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 321268 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 321329 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 321390 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 321451 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 321512 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 321574 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 321635 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [321677] 321677 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 321738 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 321799 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 321860 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 321921 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 321982 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 322043 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 322104 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 322165 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 322226 29 96.6 0 A............................ | A [322252] ========== ====== ====== ====== ============================= ================================= ================== 32 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //