Array 1 188441-189796 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRZ010000006.1 Listeria seeligeri strain FSL L7-1358 NODE_6_length_195105_cov_118.591120, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 188441 36 100.0 30 .................................... TGAACGGACAACATACGCTTCTATAGAACA 188507 36 100.0 30 .................................... GTGTGGTAGCGGCGCTTAACGTTCTCTCTT 188573 36 100.0 30 .................................... CTTATATCAATCTCTCCTATTTCCCCTATT 188639 36 100.0 30 .................................... TAAAAGTTTTTTCAAACGATCCACCTAGCT 188705 36 100.0 30 .................................... GATATTTCTAATAAAAATCAAACAGCTACT 188771 36 100.0 30 .................................... AATTAATTAATGAGTACAGAGGAGCTTTAC 188837 36 100.0 30 .................................... TAAATATTCGCCTGCCATCGGTCAAAGTGA 188903 36 100.0 30 .................................... AACCACTTCGCCACAAATTCTGGCACAGTC 188969 36 100.0 30 .................................... CTCAACCAACAGGTAGTAATATTAAAGCGG 189035 36 100.0 30 .................................... AAGCTCAATCAAAATACCTCTCTCGTCATC 189101 36 100.0 30 .................................... CGAGCTTCATAGACTTCTCCGTCTATCTTG 189167 36 100.0 30 .................................... TGAAGATATATTAGGCGTTACATCAGTTAA 189233 36 100.0 30 .................................... CATTTATCGTTTTTCGGAAATGCACAAAGG 189299 36 100.0 30 .................................... CACAGAAGACCTGAAAGAAACAGGAATAGT 189365 36 100.0 30 .................................... CGGAGAAAAAAGTGAACTCTTAAAGATGTA 189431 36 100.0 30 .................................... TAAAAGACTTTCTATCTGGTATGTGGGAAG 189497 36 100.0 30 .................................... CAAGCTCAAGATATTTTATATACAAAAGAA 189563 36 100.0 30 .................................... CACATACATTTCAGACATCGAGTTGGAAAT 189629 36 100.0 30 .................................... CTGAAAGAGCCAAGAGCCTCTGTCTGTTGT 189695 36 100.0 30 .................................... TTCTTGCTCTTCTAACAATCCAAGCGCTTC 189761 36 94.4 0 .....................A...A.......... | ========== ====== ====== ====== ==================================== ============================== ================== 21 36 99.7 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TGATAAGCTGACTGCAACAATTAGCGAGTTGATAGGTTACGAGCTATTGGAGCACGAGCTGGATTTAGAAGAAGACGAAATTACAGTCATTGAATTATTCAAAGCTTTAGGGATAAAAATAGAAACAAAAAGCGACACCATCTTTGAAAAAATAATTGAAATTGTACAAGTTTATAAATATTTATCAAAAAAGAAGCTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAATTGTTAGAACTAAAGCGGTATATTTCTTTAAATCAAGTGAAAGTTTTATTTATTGAACCTAGAAAAATAAAGGAAGTTTCACAAATAGTTTTAGATTTAGATTATTTTTTACATGTGGAAAATGACGTTTAAGAATCGAATGCTCTTTGAAAATAAAATATATTTTATTTAACCCATTAAAACAGCATTCAAAATTGAAATCTTGCTATGGATGAGTAGTGCGATTACGAAATCTTAGAGGATAAAAAAATCCTACGAG # Right flank : CAGCGAGGATGAACTACAAAAGTAATATCCTTTACATCTATTTTTTTCTATATTTAGTGGTAAAACTAGTTGGTTTATGTTATAAATTTTCTACAAAAAGATCACCTCGTTAGTTTGTTGTTTTGTCACTTTTATTCTAACAAAGGTGGTCTTTTTTGTGTATTAAAAAATGGATTTGATTATTCCTCTCAAAAAGAAATTCTCAAATCCATTTTTCTACTTACTAGGATTTATGTCCCAGCCTCTTTTTCTATACGGACTGCTGTCTAAAACAAAACACCGAAGCAATTATCAATAACACAATCGCGGGAAAAGCTAAAAGTGCAGTAATGGCAAAACATGCGCACCCAATTATGCCTAAAATATGACCAATAATAGAAATCCCAGCTTTTTTAGATTTAACTAAACCGATAATATGAATAATAAGTCCAATAGCGGCCATTACATAAAAGAAAGCACCGACTCCGCTTGTTTGTGATCCATCTCCACCTGAGAAACTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 38037-39100 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRZ010000011.1 Listeria seeligeri strain FSL L7-1358 NODE_11_length_109628_cov_105.206297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 38037 29 100.0 37 ............................. TGCCTTAGCCGAGTTTGAGGTATATGCCGATAGTGAA 38103 29 100.0 35 ............................. ATAACTTCTAACGTGTAACTACCTTCTCCGCCTGT 38167 29 100.0 36 ............................. GAGTGCTGTCCAGAATTTTTCCGTCGTTCCAATTCA 38232 29 100.0 35 ............................. ATTCTTTGATGGGCGGTTTAAGGTTTGCGATATCC 38296 29 100.0 36 ............................. ATTTCTCGGCATTTGTTGATTCAGGATTCTTTGCTT 38361 29 100.0 35 ............................. TTAATTCATTTGGAGTATCCCTTTCAAACAATTTT 38425 29 96.6 34 ...................G......... TTACCTACAAAATAAGTTATTTCCACTACATCCA 38488 29 100.0 36 ............................. TTACTAATTCGTACCGACTTTCTAGTTGCCAATAAC 38553 29 100.0 36 ............................. TAAAACCAACCTTTCCTAAAATGAATATAAGTTAAG 38618 29 100.0 35 ............................. AAATTAACAATTAATGAAAGCATCATGTCTACATC 38682 29 100.0 34 ............................. CTGTGTCATGAATAGCAGAATAAGAGGCCCTCGC 38745 29 100.0 38 ............................. CATGATGAGAGTATGCTCAATATCATTGTCTTGATTGT 38812 29 100.0 34 ............................. CTATGATATCTTCAAGGGCATATCGACAAGTATC 38875 29 100.0 37 ............................. TGTTAATATTATCCAGAGGTGATACTGTTGGAATTTC 38941 29 100.0 38 ............................. ATGCCTCTTACGAACAAGGAAAGAGAATGCCGGATACA 39008 29 100.0 35 ............................. TGGGGACTGTACAGGCTAACATGGCATATATTTAT 39072 29 96.6 0 ............A................ | ========== ====== ====== ====== ============================= ====================================== ================== 17 29 99.6 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : CGCAACAACTTCAGCCGATGTCCTGCTAGAAAAAGGCGCTGTAGAAGTCATTGCCTGCGCAACCCACTCCGTTATGGCTGGAAACGCTACTGAACGCTTACAAAACTCAAAAATCAAAGAAGTTATCACCTCCGATTCCATTGATCTACCAGAAGATAAACAATTTGATAAACTAACAACCATCTCCATCGGCCGCATCCTAGGCCGCGCAATCGAAGGCGTTCAAGAAAACCGCTCATTGCATCCGTTGTTTTAAGAAAATCTATAAGCAGAGACTCAAAATTAGGTCTCTGCTTTTTTGTGCGTTAACATCTGTCGACCGTTAGTAGTGTAGAAAACAAGGGGGATCGACAGAACATTGGATTCCTTTGTGGGAGAATAGGTTTGGTGGGTTTTGAGTTATGAAATTAAAGTTTGGTGCTTTGATTTTAAGAGGTTTTTTGGAGGTCGACAAAAATAGGCGCTTGAGGTAAGATTGGAGTAAGAGGAAAAGTGAACGG # Right flank : TGTCTCCCAGTCCACTTGCTTCAAGTGACCAGAAGTGTTTTAACTACTTTTAACCATCCGAAAAACACCAAAGAGGAGGAAACACTCATGAAAAAAGTATTTATCCCGCTACTATTTCTACTAATCCTACTAGCTAGTTGCTCCGCGCCTGATGAAAAATTAACAAAAGACACCAAGATTTTTAAAGAAGGCGTCATCAACGCGGATTATCAGGTTCCAAAAAACCTAGCAGAGCTTGAATCGAACAGTGAAGATATCGTAAAAGTGAAATTACTACAAAATAAAGAAATTGGTAAAGTAAATAACACAATAAGTGAAGTAGAAATTATCGAGAAATACAAAGGGAATTTCAAATCAGGTGCGACAATCGACATTTCAGAACCTTGGCTTTTAAACACAGGAGAATACCAAGCTGTGGAAAACTACATTGCACTTGAAAAAGGTCAAGAGTATATCTTGTTTTTAAGTGGAGGGCATGACGGGGATAAAGTAAGTTCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 2 45315-46704 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRZ010000011.1 Listeria seeligeri strain FSL L7-1358 NODE_11_length_109628_cov_105.206297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 45315 29 100.0 37 ............................. GAAAAATAGTGGTAACAGGTAACGCTTCTGTAACCCC 45381 29 100.0 36 ............................. ACACCCGACTTAGAAGAGTTAGGAGCCGTAGAATCG 45446 29 100.0 36 ............................. CAATTTAGAGACCTATCAAATATCGAACATGCCAAT 45511 29 100.0 37 ............................. AGTAGACGGGGGATATATTAAATTAAGGCATGACCTT 45577 29 100.0 36 ............................. GTTAGAATCTGTATACAAATCTATGTCTTGATCAAC 45642 29 100.0 35 ............................. GGAGTCGGTGCTTTCTTTTATGTAATGGCCGCTAT 45706 29 100.0 34 ............................. TCATGTCATTCGCATTACTGATAAATGCGATTTC 45769 29 100.0 36 ............................. ACAACAGCTGGTTTAAGTGATAGCGAGCTAGTAAAA 45834 29 100.0 34 ............................. CATTAATTTTCAAATGGAATGAGGAACAAATAAA 45897 29 100.0 37 ............................. ACCGCCAAGTAGGAGTTGTAAACACTTGTCTCGCCTA 45963 29 100.0 36 ............................. AGAGGCATCACCCCCGTTCCTGGAGATTTAGCCACC 46028 29 100.0 35 ............................. TACTGAACCATACCCCGAACTTTTAACAACATGGT 46092 29 100.0 35 ............................. AAAGTATCTTTTTCTTTAGACGATGACGATTTTAT 46156 29 100.0 35 ............................. ACTTTATAGAACTGTCGCCTATTTCTCCTTGTAAA 46220 29 100.0 37 ............................. ATCTTTAGGAATTTAGTTACTCGCTTAGTTGCTTTCT 46286 29 100.0 37 ............................. TCGAGACTTAGACGACCATCTTCAATGGCTTTCACCA 46352 29 100.0 35 ............................. ATAGATGCAATAATGTTATCTACCGGATTCATTAT 46416 29 100.0 35 ............................. GTGCGGGCAGTTTCGTCACCGTGACCCACAACATC 46480 29 100.0 37 ............................. GTTTGAGCGGTGAATTTAGCAGTGACATCTTGCACAG 46546 29 100.0 36 ............................. GGAGAATGACTCGCAATAAAATTGGCATAATCTTTT 46611 29 96.6 35 ....A........................ ATATACGGTATCCGGTATACTCGCCGTCCCATTCT 46675 29 86.2 0 ........C....C..A...........G | T [46701] ========== ====== ====== ====== ============================= ===================================== ================== 22 29 99.2 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : AAAAAGTAACCGTTCCATCTTTTTTCTCTTTTGTATCCGCTTTGCTCGTTGTTGAATCATTCCCACAGCCCGCAATCAAAAGTAAAGCGCAAAACATCACCATCAATTTCCAAACATTTTTCTTCATCCTTTTTCTCCTTTTTTCTATAAGTTTTTAGCAAAATAAAAACCCAGATAAATCAAAAAATAGCCCAAAAGCCATCTTCCAATCCATCTAGGTTATGCCCAAAATAGGTAACATTCCTGAGTGAGGTATTTGTTTATAGGATAATTTTAGCACAGATAGTAAGCGTTTACAAGTTTGCGCAATTTCTGTCGATGTGTGGTAGCGTAAAAAGTACTGGAGACCGACAGATTTGCGGGATGCATTGGGAGAGAATGAGAGTGGGGGGGATTTGGGTTTTGAATAGTAATTTTAGGAAGTTAAAAAGCTGATTTTGAGATAGGTCGACAAAAATAGCCTTGTGAGGTAAGATGGGAGTAGGGATGAAAATGGACGG # Right flank : GCCCTTCAATCATGCTAGTAAAGTTGCAGAAATAATTATTTCGAATTATAAATTCATCTAGCAACTAAAACATAGATAGTAGCATTATCATAAATTTCCCAGACAATAAAAAATTAAAATCAAATTCTTTACTAGTTTTAAGGTATAAATCTTTTTAACAAAAAGTGAAAAATTTCAATTAATCATATAGCAAATGTTAAGTAAAACACTAGTATTTTCAGTGTTTTTTTTTCGCTAGCATTCACTCTTTTTTTGTGTTAAATTAAACACAAGCAACAGATGGGGGTGACAAAAATGAGACTAAAAATAAATTGTGATTTCGAATCCAACATAATACCGAAAGACTACAGAGGTAAAATAGTCAGTTTATTCAAAATAGGAATTGAGAAATCTAGTCCAGAAAGATATGGAGATTTATTTGGTAGTAATAAGCGGAAAAATTACACTTTTTCGATATACTTGCCTAAACCTAAAAATAATAAAAATGAAATTTATCTTGA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: F [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.10,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.27 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 3 56483-57165 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARRZ010000011.1 Listeria seeligeri strain FSL L7-1358 NODE_11_length_109628_cov_105.206297, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 56483 29 100.0 40 ............................. TCAGTCGTTCGGTTGTAGTAACATAGCGCTCTACTTCTTG 56552 29 96.6 35 T............................ TAGTTTTGCCACATCATATTGTCCTTTCAATCCCG 56616 29 96.6 36 T............................ GCCGGAACAAAATTAGAAGTTGTGAACGGTGAACGG 56681 29 96.6 37 T............................ GAGATAATGTTACTCATACCAGTAATTAGTCCGGAAG 56747 29 96.6 37 .....................G....... TGTCTAGCTGATTACCAGCCAGAATCAGGGTGTAAGG 56813 29 100.0 34 ............................. CTTTTCTACCAAGTTTTTATAGGCTTTTTGCCTT 56876 29 100.0 36 ............................. ACAGGAAAGGGAGAAACGTCATTAGCTGGGCTAAAG 56941 29 100.0 35 ............................. TTTGCTGGATGATTTGGCTCTATATCCAGATGACA 57005 29 100.0 37 ............................. ACTACTGATTGCGCTTTCATGGTATGATCGTATAAAG 57071 29 100.0 37 ............................. GTGGTCACAGCGTTCTTATTGCCAGCTGGTGAGCCCC 57137 29 72.4 0 .......C.G.....CA.....CA...CC | ========== ====== ====== ====== ============================= ======================================== ================== 11 29 96.3 36 GTTTTAATTACTTATTGTGAAATGTAAAT # Left flank : GCTTCAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCTGTGGAAAACGGTGGGGCAAAGGTATGGCGCAATGTGTTTAAGATTTGTAAGCGATATTTAACTCATGTCCAAAAGTCTGTATTTGAAGGTGAAATAACGCCAGCTCTTTTAGTGAAATTACGGATGGAGCTAGACAAATATATTCGTTCAGATATGGATTCAGTGATTGTCTTTTCCAGCAGGCAACAAAAATGGTTAGAAAAAGAATTTTGGGGACTGACTGATGAAAAAACATCGAATTTTTTCTGAATAAATATTTCTGTCGACCTCCAGTAGTGCAAAAAACACTGGAGATCGACAGAAACGCGGAAAGCCTTGGGGGAGAATGGTTTTCGGTGAATATGCTTGTTTAAGTCGAGAAAATAAGATAGATTTTACCTGCTTTTTACAGCGGTCGACAAAAACAAGCCCGTGAGGTAAGATGGGAGTAGGGAAAGATATTGGCG # Right flank : CCCACCCACCCTTAAAGCCAATAATCTGCTCTAAGGGTTTTTCATTCAAAAACCACCACCCCCAACCTCCCATTTTTTTCGTCCAGCGAAAACCGTTTTCGAAATACTTGTAACCGCTTGCAAGAGGGGGGCTCTATAACTATAATGAACGTAGTAATTGAGTCAGATATAATATTTTTTCAAAATTAGCTAACTGGAAAAATAGAAAACGGAAAAATGGGAATATTTAATCATGTTTTCATTTTAATCTAACAAAAAGGAGAGCTTAAGTATGAAAAAAATCGTATCAATCGGTTGTATTGTGGGACTTTTAATGCTTCTAGTAGGGTGTGGAAGTGAAGAAGCTTCAAGTTCAAAAGTAGAGTTTTACACGGATAAAGGTGGAGAAAATGTTGGTATTTTGAATTCTATGTCAGATCAGATTGAAAAAGATGGGGGCGTTGGGTTTAAAACTGTAGGATATACGGATGTGACATCTTATGAGACAGCGGTCCAACAAT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:85.71%AT] # Reference repeat match prediction: F [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //