Array 1 1356664-1364898 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLPG01000001.1 Phytohabitans rumicis strain NBRC 108638 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 1356664 36 94.4 34 C....G.............................. CGGTCGCGTACGTCGAAACCTTCGCCGGAGACGT 1356734 36 97.2 38 .............T...................... CTGTTGGGCATAGCCGCCGGCAGCGAGCTGGCCAGCCA 1356808 36 94.4 33 ...........A................A....... GCACTCGGTCACCGCGACCGTGACCTACAAGCT 1356877 36 100.0 36 .................................... TGCCGATCTCCCCTTTGTGGATAGTTGGCGACATCT 1356949 36 100.0 40 .................................... CGGCCTTCGCCTCGCCTGCGAGGGCCTTGTTGTACGCCAC 1357025 36 100.0 38 .................................... TTGCCTTTCTCGGTGTAGGTGACGACGACCCGCGCAAA 1357099 36 100.0 33 .................................... AGCGGTGGGTGTGGCGGTGCGTGCCGCCGACGC 1357168 36 100.0 36 .................................... GTCGGGGCAGATGGCACGCAGGATCCGGGAAGGCCT 1357240 36 100.0 41 .................................... CAGGTCCTTGACGATGTGGGACATGGCTACGGGACCACGAA 1357317 36 100.0 40 .................................... TTGCTGTCATCCGCACCCGCTGGTCCGGTGCCCCCAGGCT 1357393 36 97.2 11 ....................T............... CTGGGTCCACG Deletion [1357442] 1357440 36 91.7 36 ...C.C.G............................ CTACTGCAACGTTGACGGATCGATGCCCGGGATGTC AG [1357444] 1357514 36 100.0 38 .................................... TTCTGGCTAGAGCTGGGGCGACGCGCCGGCCGCTTGAG 1357588 36 100.0 38 .................................... GACTTTACGGTCTTCCGCCGTGCGCCGGAGCCGCTCGG 1357662 36 100.0 41 .................................... ATGCTCGGCAAGCCGATCAACCCGGACGTGGCCGCGCGGAC 1357739 36 100.0 35 .................................... GGCGTACTCGCGGTGCTGGCGTGCTGCGGCGGGCT 1357810 36 100.0 38 .................................... CTTGCGACAGTCCTTTATGGAAGCTTGAGCAGCACGCT 1357884 36 100.0 37 .................................... CAGCGCTCTCGGCGGCCAGCCCGGTCTGCATGGTCCA 1357957 36 100.0 36 .................................... ATCGAAGCTTCCCTCGTACCCGCAGCTGGCCGACAT 1358029 36 100.0 35 .................................... CGGTTGTCGATCGACCAGCGGATCGGATCGGACAA 1358100 36 97.2 38 ........................A........... CGGCCTTAATGCACCATGGCCCCTGAGCAAAGAACAGC 1358174 36 100.0 35 .................................... ACCCCGCACTGGCAGACATGCCTCGACGCCGGCCT 1358245 36 100.0 33 .................................... GTAGAAGCTGAGCCAGCCGGCCTCGTGCTGGCC 1358314 36 100.0 34 .................................... TCGTCTACGAGGGCGGCAGCTACGGCCGCGCCCA 1358384 36 100.0 33 .................................... GGAGGAAGGGGCCCCGCAGGGCCCCCCGGTCCT 1358453 36 100.0 39 .................................... CTGGGGCCCGGGATAGACACCCGGGGACTGGGCGGGTTG 1358528 36 100.0 38 .................................... CCTTCGCCGTGGACGCCGCGCACGACACCGCTCGTGGC 1358602 36 100.0 36 .................................... GCAGATCTGGGGCACCGTCGACAAGTCCGCGTACGA 1358674 36 100.0 36 .................................... CAAGTGCGGATGTGGTCAGGTGACGCGCTTGAACAG 1358746 36 100.0 35 .................................... GACGTGACCGAGGCGGAAACCCTGGCCGCGCCTTC 1358817 36 100.0 35 .................................... GACGTGACCGAGGCGGAAACCCTGGCCGCGCCTTC 1358888 36 100.0 39 .................................... CCGCACCGCGGCCTTCGGCACGCCGGCCTTCCCCAGCGC 1358963 36 100.0 38 .................................... AGGTACGAGGCGGTCGGGACCATCACGAGCTCGTCGGC 1359037 36 100.0 33 .................................... GGCCAGATGTCCGGCGTGGTGCGGTTCTCACCC A [1359064] 1359107 36 100.0 37 .................................... CCGTTACCTTCGATTTGCCGACGTTGTCCGACGCGTT 1359180 36 100.0 36 .................................... CCCGTACACGCTGACCACCCCCGGCCGGACCGCCCT 1359252 36 100.0 36 .................................... CCAGTGGTTGGTGGCGAAGTGGTGCCTGCCGACCCT 1359324 36 100.0 32 .................................... TCGCGGTGGACCGCGGTCGAGGTGTTCGAGGC 1359392 36 100.0 38 .................................... CGGAAGCCGGGGTGGTGCTGGGTACGCGCGCCCTTCGG 1359466 36 100.0 34 .................................... CGCAGCGCCAGACGTGACCGTTGGCCTCAGCGAC 1359536 36 100.0 38 .................................... GGCGGCGCCACGGACACGTTCGTGACCCACTGCACGGT 1359610 36 100.0 35 .................................... TTCCATCCGCCGCCGCCCGAGCAGATCCCGGACGT 1359681 36 100.0 35 .................................... TCGGGGATGGGTGAGCGGTCGGTCGAGCCGGACGA 1359752 36 100.0 35 .................................... TCGGGGATGGGTGAGCGGTCGGTCGAGCCGGACGA 1359823 36 100.0 36 .................................... CACGTTGAGTGTGAGCTTCTCGCGCTTCAACACGTG 1359895 36 100.0 36 .................................... GTCGTAGGTGGTGCCACCATCCGCGCTGCGCACCAA 1359967 36 100.0 40 .................................... TCGATACGACGGCGAGACCTGAGGTGGGTCTTGCTGCGGC 1360043 36 100.0 33 .................................... CACGCGTTGCCGGCGCGAGCGACCGGAGTGCAG 1360112 36 100.0 38 .................................... GGTTGCTGGCTGAGGAACGCGTCGAGGAGGCGATGGAC 1360186 36 100.0 37 .................................... AGAAGATCCTCAGCGGCGGAGCGCAGGGCGGCAGCTC 1360259 36 100.0 33 .................................... GTTCGCCGACGCCAACGGCCCGCACGCGAGCTT 1360328 36 100.0 33 .................................... GGTCCAGTCCGGGGTCGCGCCGGGCTCTGCCTC 1360397 36 100.0 35 .................................... GTCCTCAGCACCGCCATGTACTTCACGGTCGGCGG 1360468 36 100.0 38 .................................... CGGAGGCGACCAGGAGGCCAGCCATGCCGGCCACGCGG 1360542 36 100.0 38 .................................... CACACCGTGTTCGAGCGCGCCGGAGCCGTGGTCTGAAA 1360616 36 100.0 34 .................................... GGGCCTCCTTGGCCAGCGCGCTGTTGTACGCCAG 1360686 36 100.0 34 .................................... CCGCCGACATGATGGGGTCAGCCCTGCGGTCCGC 1360756 36 100.0 39 .................................... GATGACGATGTCCCCCGACGGGCTGGAGGGGTCGATCGC 1360831 36 100.0 39 .................................... CCGCATCTCCGAGCCGTCGTCCGGAGAGCCGGCGATACC 1360906 36 100.0 36 .................................... GTCAAGACCACGCAGCCCGACGCGACCGGTGAGGCT 1360978 36 100.0 37 .................................... CCGGCACGCGCACCCCGGCCGGCACGCGGCGACAGCG 1361051 36 100.0 38 .................................... CCGAACGCGGCGCGCTCGACGGCCATGTGCAGCTCCAT 1361125 36 100.0 35 .................................... ATGGCCAGCGCGGCGAGCACCGCGCAGCCGATCAG 1361196 36 100.0 35 .................................... AACGTGTCCGGGCTGGCCGGGTCGCCTGCGCGCAG 1361267 36 100.0 37 .................................... CAGCATCGCACGCACGGCAGCGGATCGGCGCGGAAGG 1361340 36 100.0 38 .................................... GGGAATCCCCTATTCCCCTTCAGCAAAGACGGCGTACG 1361414 36 100.0 35 .................................... CCGCTGCGTTGGGGCAAGTACGTGATGGCGTTCGT 1361485 36 100.0 32 .................................... GTGCTCGCGTCATCCGACGACCGGGCGCTGCG 1361553 36 100.0 34 .................................... TCTGGCTTGACATCGGCGAGGGGGCAGCCGATGA 1361623 36 100.0 36 .................................... CCAGCACCACGAGCACTGTCCGCGCTGGCCGGCCCG 1361695 36 100.0 35 .................................... GCGTCGATCACGTCGTTGATCAGCGAATCGGACGC 1361766 36 100.0 40 .................................... ATGTCGACGCACTGTTGTGCTCCGCTCCCGGCGAGCCGGT 1361842 36 100.0 35 .................................... TTGGCGTCGTCGAGGGTGCCGACGATGTCGAACTC 1361913 36 100.0 33 .................................... GGCGGCTACCTCCGCCCGTTGAAGCCCTACCGC 1361982 36 100.0 34 .................................... CTCGAAAACGCCGGCCCAAACGCCGCGCCCGAAA 1362052 36 100.0 32 .................................... TGGACAGGGGCGGTGTGGATCCGCCCCAACGG 1362120 36 100.0 36 .................................... GCATGAACACGGACCGTAGGGAGCGTCGATGAGCGT 1362192 36 100.0 38 .................................... GCGGCAGCCGGCTCAGGTCCGCCACGGCTCAGGAACCC 1362266 36 100.0 35 .................................... GACACGGCCAGATACACGCCGATCAGCGCTGCGCC 1362337 36 100.0 35 .................................... TGGTAGATCGCCACCAGGGACGCGACCATGTCCAG 1362408 36 100.0 37 .................................... GGACTGGAATGGGGAGTCCTGGGTACGGCCGGGATTC 1362481 36 100.0 39 .................................... CGCGCCGCAGTCTTCGCACGTCTCGTCCGGCCCTTCCCA 1362556 36 100.0 36 .................................... ATCCGCGAAGATCGACGAGGTGTTGACGTGCGCCGT 1362628 36 100.0 38 .................................... CTCTGGAACGGCCAATGGGGCATGGCCCGGCTCGACAT 1362702 36 100.0 39 .................................... CTCCGGCGTCACCGGATCGGTGTCACCGCCGGCCTCGAC 1362777 36 100.0 37 .................................... CTCCTTCAGTTGGTGGCCGGACGGTCCGGCCGGGCAA 1362850 36 100.0 32 .................................... TCGCCGGTCAGCGCGCCAGTGATCCCGACCGT 1362918 36 100.0 39 .................................... GAGGCTCCCGTTGTAAGGAGCCGCAGGGTTGCGGCACCT 1362993 36 100.0 34 .................................... TCGGGTACGGGCTCGGTCTGACCCCGGCGGCCAG 1363063 36 100.0 36 .................................... CCGCTGCGGCGCACCCGCCACCGTCCACCTGATGGT 1363135 36 100.0 37 .................................... AGTCATATCCGCTTAGCTCGTCATCGTTTTGCAACGT 1363208 36 100.0 36 .................................... GAGGATTCGGAACAGGAAGAACCACGAGCCGTAGGT 1363280 36 100.0 32 .................................... TGGGAGGCCGGCGCCTCCAACACGGCCGGGAA 1363348 36 100.0 34 .................................... CGGATCTATATGTGAGGGGTGGCTGAGCAGTGGC 1363418 36 100.0 32 .................................... TAATATTCCACCCCTGCCTGACCTGCGGCGAT 1363486 36 100.0 38 .................................... CCGAACGCCTCGGACGCGCTGAAAAGCGAGTGCGAAGA 1363560 36 100.0 38 .................................... AGCGTAGCGGTAGCGGCGCCGAGGGGCCCGGGAACGTC 1363634 36 100.0 36 .................................... TCCCGACCCGATCCTGTCGCAGGCTGGGGTGACGTT 1363706 36 100.0 39 .................................... CTACCGCGTCGTGGTCGACGCGTCGGAGGCCATGCTGCT 1363781 36 100.0 34 .................................... CCATCCTCGGCGGTAACACGCCCTGGGCGAGCCG 1363851 36 100.0 36 .................................... GGAATTCTGTTATCGGGTTCCTGGGTGGGCTCCGCG 1363923 36 100.0 33 .................................... CGCCAGGATGTTCCCGCGCGGTCTGGCTGCCGA 1363992 36 100.0 37 .................................... TCGCTGGAACGACACCGCGACCGCATTCGCAGCGTGA 1364065 36 100.0 34 .................................... CACTCCGCGACCTCATCCTGCCCGACCCCGAAAG 1364135 36 100.0 36 .................................... GTCGGCGAGGGTTTTCCCGAAGACTTCGTCGGCGGT 1364207 36 100.0 39 .................................... GACGGCCACGTCTACGGCGACTGGACCCGCGAGCAGGCC 1364282 36 100.0 38 .................................... GCAGTGGGTCGTCCGTCGAGAGCGACGATGGCGTCCGC 1364356 36 100.0 37 .................................... TGCGCAGCACGTAGGCGGCCTTGCCCGTGAAGGCGGC 1364429 36 100.0 35 .................................... TGGCCGAGGATCATCGCCGTCGACGCCCCGCGTGT 1364500 36 100.0 35 .................................... TCGATGCGGTGCGGGCGGATGGTCGCGACGACCAC 1364571 36 100.0 40 .................................... CTTAACGGCGTCCTGTGGTTCACCCGATGAGCCGCCGCGC 1364647 36 100.0 37 .................................... GTGCACGGCGGCAGCGTCGAGGGGCGCTTGCCGGGCG 1364720 36 100.0 35 .................................... CGCCCGGGTCCACGTCGGAGAACATGGCGGACACC 1364791 36 100.0 36 .................................... CCGGGGCCGGAACCCCCGGCGCGTAGCGCCGCTGCT 1364863 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================= ================== 115 36 99.8 36 GCCTCAATGAAGGGCAGCTCCGGTGGGAGCTGCGGC # Left flank : TGCCCAAACGAAGTTCTTCAGTGCTCGCCTCTTATCACTGATTGTCGCCCCTACGCAGAGGTTTTCGGGGGGTAAACGGGGGGCGAGGACGGACCTTCTGGTCGCACCGGCGGCGCCTCGGCATCCGCCTTCGGCCGTTCGATGCCATCGACGCCCGATAAGCCAGCAGCAGCCGGACAGCTCTCACGGCTGAGGAACCCGACGTGCGCCGCCCCATGAACGCGCCGATGCGTGGGGGTTCATGTCGGTGGCCAGATCGACACCGCAACCCCACATGACCAGCCGGCCGACGCCCAAATCGTCATCGGACGATAGGCACTCCACCACCCGGCCCTCTCGTTTCATCGTGACCCGGCGTCGTCGAGAACGCGGACGGCGCCGTGTCACGATTCGTACCGCCTTACCTCCCATATCTGGGCCTCGGCGAGATACCTCCCCGCTCCTGTCGCCGCCAGATCGCCGGCTGCCTGCCAAGGCGATGGCCGCCGCGTTCTGCATCC # Right flank : CAGGGTCAAGATCCTAGCCGTCTTGAGCAGGGTCCCAGCCGGTCTGCTGCGAAGGGTCTGTTTCCCATGATCGGATAGCGCCATCACGACTGCCAGTGCGGCGTCCTGCAGGGCGCGCTGGCTGGACAAACACCCGCGCGACAGGTGCACGCTTGGATGCGGGATGACGGAGGCTTCGCCGATGGTCTAGAGGATTGCTGGCCCGTGGTCGGTGATGGTGCGGCTGCGGCCGATTACGTCGAGCGTTCGGCTTTGGTTGTCGCGCAGAGTACCCAGGTTGCAGAACAGGATCGAATCCGTGCCCTGGTCGATCAGGTCGATGAGCTGGGTACGAAGCCGCAGGAGCTTGGCTGGGCAGGTGTCCACGATGAAGACGCTGTACTGGACGCGGTCGCCGTACGATTCGAGCTTCTTGGCTACGTTCGTTCTCCGGACGTCGTCCGAGATGTCGTAGGCGATGAGGTAGCGCCGTACGTCGTCCAGGCTCATCGGACTTTGAT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCAATGAAGGGCAGCTCCGGTGGGAGCTGCGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.41 Confidence: LOW] # Array family : NA // Array 2 1382794-1379170 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLPG01000001.1 Phytohabitans rumicis strain NBRC 108638 sequence1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================================== ================== 1382793 36 97.2 38 ......................A............. CAGCAGGTCTTCCAGGTTCCTCCGAGTACCGTCGCGGC 1382719 35 91.7 40 .............-..A.....A............. GTGAATGCGCCGGCTTCTACGACGACGTGACCGCGCAGAC 1382644 36 97.2 34 ....................T............... AGACGCCCGTGACGGTGCAGATCGCCTGCGGCCG 1382574 36 94.4 36 ...................TT............... CACCCCGATTGGGGTGTGCCGCGGATCCGCCAGACA AGCT [1382568] 1382498 36 97.2 40 ..........T......................... TCGACCTGATGACCGGGACCGCGCTGACCACGGCGAAGGC 1382422 34 94.4 36 ........--.......................... GGGGGCCGAATACCGGCCCGTGCGCATCCCCAACGC 1382352 36 97.2 37 .................................A.. TCGGATACCGGATCACCAACGACCCGGTCTTCGTCCA 1382279 36 97.2 36 .................................A.. GCGGCACGGGTCCACAGTGGCCACGCTGCGCGCGGC 1382207 36 97.2 35 .................................A.. GTTGGAACCGGTCACCGGCGGCCTTCCGGCCTCGC 1382136 36 100.0 36 .................................... CGAGCTGCTGCGCGCGTGGCGGGCGTGGTGGCGGCC 1382064 36 100.0 36 .................................... TCTACGATCGTGCTGTACCCAATCCTGACGCCATAC 1381992 36 97.2 39 ................................T... TTCAGCGGCGGTGGAAGTGCCCGCACTGCTCTCGTTCCC 1381917 36 100.0 36 .................................... CTGGTCCAGCAGCCAGCCGCCGGCCGCCGCGCTCGC 1381845 36 100.0 34 .................................... ACGGCCACAAACGGTGGGAGAGGTCAGAGAACTA 1381775 36 100.0 38 .................................... TTCATCGGGCCGAAGCGCTGCGGGGCCGCAGACGCCGT 1381701 36 100.0 36 .................................... CGTCCACACAGGAGAGCCGTCGACCTTCGCCAGGCG 1381629 36 100.0 37 .................................... CTGCACCACGGGCGCTGGAAGCGTCAGGGCGATCCAC 1381556 36 100.0 38 .................................... CGTGTCGTGGGATCGGCTGGAGGTGCCCTGATGGCCTG 1381482 36 100.0 39 .................................... CGCGATGCCGACCTACATGGACGACCCGGGCGGGGACGG 1381407 36 100.0 36 .................................... AGCACGTCGCAGCGCGGCCAGCCGGGCCGCAGGTGG 1381335 36 100.0 38 .................................... CTCGGCCCCTGACGATCCGCGGCGAACTGCGCAACGCT 1381261 36 100.0 33 .................................... CTCATGTCTTCGCCGGACGTCTACGATCGTGCT 1381192 36 100.0 34 .................................... CTGACGGTGCGAGAGGCGCTCACCGCGGAGCTGG 1381122 36 100.0 38 .................................... ATTGAAATTGACGGAGATCCGTCACCGGAAATCCGTGT 1381048 36 100.0 40 .................................... CTGCTCCGCCGGGCAGGCCAGCCGCGACGACGTTTCGGGG 1380972 36 100.0 40 .................................... CGGACTGCTCGGCTTCCCGCTCCATCCGGTCGAGGATCGC 1380896 36 100.0 37 .................................... GCTGTTCGAGCGTCTGCCCGCGCCCGACGAAGGAAAC 1380823 36 100.0 32 .................................... TAGTCGGTCGTGATGTCCGAGCCGTCGTAGTT 1380755 36 100.0 42 .................................... CTTCGACATCTTCGGCGACATCCTGCTGCCGGACATGCCGGA 1380677 36 100.0 40 .................................... CAGCGTGCGCAATCTCGCGGTGCTCGCCGATCTCCGACAC 1380601 36 100.0 39 .................................... GCGGATCGGCCCCCGGGTCACTCCCGAGGGCCGATAGAA 1380526 36 100.0 33 .................................... AGGGCAGCCAGGGCACGACGGGCACCCCGGGCA 1380457 36 100.0 41 .................................... CGGCCGACACCCGCACCATCTTCACCGTCGCCGGCGGCCAG 1380380 36 100.0 34 .................................... CCATCTGCACGAGCACGCACGAGGGCGCGACCTC 1380310 36 100.0 38 .................................... CAGTCGATCAGCCGACAGTGATCACGTGAACCCGAGGA 1380236 36 100.0 34 .................................... CCTTAGTGGACGATGAGCGGGAATCCCTTGCTGT 1380166 36 100.0 32 .................................... CGTCGAAATGCCGCCTCCGTACGCCCAACCGA 1380098 36 100.0 39 .................................... TGTCTGTTTTTCCCCGTATGGGTACCCTTGGACACCCCC 1380023 36 100.0 36 .................................... CCACGAACGACACGATGGCCGCGGCGGCGAGTCGGG 1379951 36 100.0 37 .................................... CGCAGTACCCCGGCGCCCCCGCCGGCTACCCGGCGCC 1379878 36 100.0 35 .................................... CCTGGGCTGATCGGGGATATGACCGTGACTGCCAC 1379807 36 100.0 34 .................................... GACGCCGGCCGGCGCCAACGCATCGAGAACTTCC 1379737 36 100.0 40 .................................... TGTTGAAGGTCGCAAACTCGGCCGGCTCTACCGGCGTCAC 1379661 36 100.0 38 .................................... GGGAAGGTGCTCGTCGTCCTGGGCGTGGCCGTGGTCGG 1379587 36 100.0 35 .................................... GCGGACGCGATGAAAAACGCGGCCTCCGACACCGT 1379516 36 100.0 36 .................................... GCCGCCCCCGCCGCCGCCTGGCCGCACGCCGCGCGC 1379444 36 100.0 33 .................................... GGCTGTTCCAGGCCGACTGCACGGGCACCGCAC 1379375 36 100.0 38 .................................... CTTGCGGCCGTGCCCGTGGCTGGAGTGGGACTCGTGAC 1379301 36 100.0 59 .................................... AGGGCCGAAATTCTAGCCACCTTGAGCAGCGCCCAAGCCGGTCGGTTGCGAAGGGTGCG 1379206 36 72.2 0 TT...C....T...TG..GT...C....A....... | C [1379195] ========== ====== ====== ====== ==================================== =========================================================== ================== 50 36 98.7 37 GCCTCGATGAAGGGCAGCTCCGCTGGGAGCTGCGAC # Left flank : GCCGCCAAGCTCGCCGGCTCCCGTTCCGCCCAGCCGACCGATGAGCTGGCCGGGCAGGGGGTGGCGGCATGATGCCGGTGAACTCGGACGCTGCGAAGGCGGCGGTGACGGTCGCAGCGCAGCGGATCGCCGCGTACGCAGACAAGCACGCCATCGTGATCGAGCCGTCCCAATGCGAGGAGTTGGCCGAGAGCCTGATGCACCTCTATCAGGCGTTCTTCACCGGGCTGGCCCAAGTTGCGGGGCAGCCGTACGCCGCCCCTACCGCGTCGACAGCATAGCCGCAGACGGATCTACCGGGGTCTGCCACACTCCAGGTTGGTGGGAGCCAGCCTTGTTGGACGCGGCAGGCCCCGCCATCCTCAATGATCTCGAAGGGTTGGGAGCGTGGGCGACGGATGGGGCCTACACGTTCATGGTTCACCTGCTTGCTGCCGTTGTCGGTAGTTCGGCGGTGATCCTTGGGGGCGCCGTAAACGCCGGCCGAGGCGTTGTGCATG # Right flank : TGTGGTGTGCCGCAGGGTGCGGTAGCTGGATAAACGCCTCCGCGACAGGTGCGCGCTTGAGTGCGGGACGACGGAGGCTTCGCCGATGATCTAGAGGATCGTGGCGAGTGATCGGTGATCGAACGGCGGCAGCCGATCAAGTCGCAAGATCGCGTTCTTGATCCCGGGATCCTGTCCTGCGTCGACCGAGTGTACCCGGAATAACCCCGTTGATCGGCCAGCAAGTGGTGCCGGACAGTGCCGACTCGTCCCCGACCGGGCGATTGCCGCCCTACTGGCGGCCCACCAAAATGAGCGCCGTCATCTCATGTTAGGTGTGCCGGTGGCCTTTTCTCTTTCAGAGATTCCGACTGATCGGGTGGTATGGATAAAGTGCTTCCGCCCGAACGATCTCGACCTGGCGGTAGCGAATGCGCCGCTCAATACTCCGGCCGTCCTCGTCCAACAGGTGACACGGTCCCGGAGCCAGAACGCGACGGTCGCCTCCACTCTGGACGAGA # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCTCGATGAAGGGCAGCTCCGCTGGGAGCTGCGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.10,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [11-19] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 1431244-1435290 **** Predicted by CRISPRDetect 2.4 *** >NZ_BLPG01000001.1 Phytohabitans rumicis strain NBRC 108638 sequence1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 1431244 30 100.0 31 .............................. CGACGCCGCTGCAATACCCGTCTGTGACGCT 1431305 29 96.7 31 .....-........................ TCGGCCACGGCGTCGGCGCAGGCTGTCTGAG 1431365 30 100.0 31 .............................. AGCGCGAGGCGAGCGCGTGGATCGATGCTCA 1431426 30 93.3 30 ............................GC GGTGCGGGTCCTCGACTTCGGCGACCAGCT 1431486 30 96.7 31 .............................C AGGGCCACTGGGTTTCCAGCGCGCGGACGAG 1431547 30 100.0 31 .............................. AGTTCCAGCGTCCATGTACGTGCGGTGCCCG 1431608 29 96.7 31 .................-............ GGATCGGCGGGTTCGGGTCGCCGCCAGTGTC 1431668 30 96.7 31 .............................T CGCCAAGCACGCCTCCGGGCTGCTCGGCTTG 1431729 30 96.7 31 .............................A TGGCTGGAATGGGTCCACCACCCAAGCCGGA 1431790 30 96.7 31 .............................C TCTCGCGGCCTCGCGCCGCGGTCGGATCGAC 1431851 30 93.3 31 .................T...........C GCCAATGTCACCCTAGGGGAGTGGTTGCGGT 1431912 30 96.7 32 .............................C TCATGGCGACGCACGGACCGTCCGATGCGGAC 1431974 30 96.7 31 .............................C GGGCGGATGGGCAGCCGTACGTCCCGGTAGC 1432035 29 93.3 31 .................-...........C GTTCCGCCTCGGCCGTGCAGGGCGGCCAGGT 1432095 29 93.3 31 .....-......................G. AGTTGATGGAATCGGCCAGCCACTTGATTAG 1432155 30 93.3 31 ............A...............G. TCGCGCCGAACGTCCGCGCGGCCGGGATCGC 1432216 30 96.7 31 .............................C GGAGGTGCGGCGCTGCCCGTCCAGCGCACCA 1432277 30 96.7 30 ............................G. GCTGCCGGCGATGCCCCGGAGACGAAGACC 1432337 30 96.7 31 .............................C GTCTCGCTGCCCGGCTGGGCGACACGCCAAT 1432398 30 93.3 31 ............................TC GCAGGCCAGCAGTGGACCCGGCCCTGGGCGT 1432459 30 93.3 31 ............................TT GGGGCCCGAATTCCTGGAAGCGTGGGGGTAT 1432520 29 93.3 31 .................-...........T TCCTCGGCGCCACCGACGGACTCGCCGACCC 1432580 30 93.3 31 ........T....................A CCGACACGAGCATCGTGGGGTGGCACCTCAT 1432641 30 96.7 31 ............................G. CCAACGCCGTCCAGCAGGAAGCGCGCGGCCT 1432702 30 96.7 31 .............................C GAAGTCGGTCTTCGCGCCGTTGCGGTTGCAG 1432763 30 93.3 31 ............................TC GGTCGGGCCGTTGACCGCGTCATCGAGCCAT 1432824 30 96.7 31 ............................G. ACAGCCGAAGGTGTGGGGCAACGGACTCGAC 1432885 30 96.7 31 .............................C GGCGCCCCAGCGCGTGCTTCGCGAGTTGAAC 1432946 30 96.7 31 .............................T AGGGAGCCCAAAGGTGGAGCACAGAGAGCCT 1433007 30 100.0 31 .............................. CGGCCCGGAACGGCGCGGTGATGATGCCGGC 1433068 30 100.0 34 .............................. CCCAGGACTTCTGGTTAGGGGTGAGGAACTTCGC 1433132 30 100.0 30 .............................. TCGCGCGCGCTTCCTCCGCTGCCCCGCTTC C [1433137] 1433193 30 93.3 31 .....................T.......A TGAACCCAATGTGCAGATGCATATTCAGTCC 1433254 30 96.7 31 .....................T........ TGGTCTCCGATCTCCGCATGGCAACCTTCCT 1433315 30 90.0 31 .........A...........T.......C TGACCATCTCGGATCCGACGGTCACGCCTTC 1433376 30 93.3 31 .....................T.......C CGCAGCGGTTCACGGTAAGCAGCGACGCGGT 1433437 30 86.7 31 ..........T..........T......GT GTCCACCCTGCACGCGATCGTCTCCCGCCTG 1433498 30 93.3 31 .....................T.......A AGGCTCCGTGGCTGGCCAAGGCCGACGAGAT 1433559 30 96.7 31 .....................T........ AGGCGTCGGCCCACGTCTGGAAGATGACCGA 1433620 30 93.3 30 .....................T.......C CCTAGCGCCCGGCTCTCTACCCCCCGACCG 1433680 30 93.3 35 .....................T.......T GTCCGCGTGAGCTGGGAAAAGTCGCCATCGGCGTC 1433745 30 96.7 31 .....................T........ ACACCTGGCGGGGCCTGTCCTCGGCCGGTGT 1433806 30 96.7 30 .....................T........ AACCTGCCGGGGACCACCAACTGGCCCATC 1433866 29 86.7 31 .....-..T.A..........T........ AGCCCACCCGGATGTTCAATGTTGGTGCCAT 1433926 29 90.0 31 .................-...T.......C CGTTCGCCAGCTCCTCCCGCTGCGCCTTCTC 1433986 30 93.3 31 .....................T.......C GTGGATCGCGGCCGACTGGCTGCGCCTGCAC 1434047 30 93.3 31 .....................T.......C CGCACAAGACCCACGGGCACTTCCAGGTGTA 1434108 30 90.0 31 .....................TGA...... AGACAGCGCCAAGCGCGTGCTTGAACAGCAG 1434169 30 93.3 31 .....................T......G. CCGCGGCCCGGGCCAAGGTGGACAAGGCCCG 1434230 30 90.0 31 ....G................T.......T ACTCGCCGTAGGCGAGGATGGGCCCGGCGCG 1434291 30 93.3 31 .....................T.......T CGGGGAACTTCTTCGATCTGGTGCTGGACGC 1434352 29 90.0 31 T................-...T........ GAGCGGCTTGCTGGCGCCGCCGAGGCGGCGT 1434412 30 90.0 31 ........T............T.......A GCCTCGGTGGCTCCAACGGCATGATGCGGCT 1434473 30 96.7 31 .....................T........ GGTCTCATCGGAAGTATTTCTTCGCATTTCC 1434534 30 90.0 31 ...T.................T......A. TTGCTCCTGCTCGCCCAGCATGAACATGTCG 1434595 30 90.0 31 ...G.................T.......C GTCCCCGTGGCGGTCACGACCTTGACGGGGG 1434656 29 90.0 30 ....-................T.......T CGCCCTGGTGGCGGTTCAGCTCGATCCGAA 1434715 29 96.7 31 .................-............ CTACAAGCGGCGCGTACGCACCGCCCTGTAC 1434775 30 100.0 31 .............................. TTGTGGGCACACCTCGTAATGGACCGGAGCG 1434836 30 90.0 31 ........................A...GT GGCACAGCCGATCGCGGAGGTCCCGGGTCAT G [1434845] 1434898 30 96.7 31 .............................T CGTCTTCGACATCCTGGAGTGCGACCCAGCC 1434959 30 96.7 29 .............................T TTCGCGGGGAACGGCTCGTTTCTGGTCCC 1435018 30 100.0 31 .............................. CGGCAGCCAGGTCACGGCCCGCCTCGCGTAG 1435079 30 96.7 31 ............................T. GGGCGGCCGAATCGTCGCATTCAAGAACGGC 1435140 30 83.3 31 G............T...........C.T.T AGCGACCCGAATCACACGGTTAGTCCGATTG 1435201 30 83.3 30 GC...........T........C......C GAAGACGCGCAACCACTCGTGGCCGAAGGA 1435261 30 90.0 0 G............T...............C | ========== ====== ====== ====== ============================== =================================== ================== 67 30 94.3 31 CTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Left flank : CCGCGCATGACAGCGCACAGGAGTCAGCCAGCGGGCGGTGTCAAGGGTCAGGACGAAGCGGCTCTGGCACGGTCTCGATGATCCGGGCGGTCGATGGTAGATCATGCCTCGTATCCATAGTGGAGCTTCCTGCGGTCTTCTTCCCGCGCCTGTCCGGGCTGCGTATCACGAACGTGCTGGCCAGGGGTGCGACGGTGCGAGTGCACGCCGAGACGAGCAGCGCCGCGGTGAGGTGTCCGGACTGTGCGACGCTGTCGCGGCGGGTGCACAGCCGGTACGAGCGGCGGCTGCTGGACGGTGCGGTCGCTGGCCGGGAGACCGTGCTGCACCTGCGCGTACGCCGGTTCTTCTGCACGTTCATCGGCTGTGTGCGCCGGATCTTCGCCGAGCAGATCGACGGCCTGACCGTGCGGCATGGCCGGTACAGCGAGCTGGCCAGGCGGATATTGAAGGCCGTCGCGTGGTCCAGAACGCCCCGCACGCGGCCATTTCGACCTCGC # Right flank : CGGGCCTGGCTCGGGCGAGTGGTGCGGTACCTCCGCTCCCACACACACGGGGTGATCCCACGACACGGACCGTACTTCCACAGCGACACACCACAGCAAAGTTCACCGTCGGCAACAGCTGACGACCGCGGCAACTCGCGGCCCGCCACAACCAGCGGGCCGCGAACACCTGTCACATCGGGGCCCAGCCAGCCCGAAAGCGTGCAGCGCGCGGCCCGCCGTCTGACCGGTCGTTCGAGCCCCGAACCCGCGGATTAAGAGCGCGAGGACCTGCATCAAGCCCGATAGCGCCACCCGTTGAGGGTCGGCCGCGTATGAGGACGCGTCAGGTCATTTGTCTGGTTGCAAGATAGCTATCCAGTACACGCAGTAGCTCCTCACTGGCCGGGCCTTCTAGCTCGCCTGGAATCGCGGCAGCGCCGGACTCGTCCAAAATTGTAGGAAAGATTTTCGACGCCACGATCACTGACCAGTGAAAGCTAGATTTCTGTCCGAGAGTA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.14, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCACGCGGGGGTGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [7-39] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //