Array 1 95168-93919 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQBB01000136.1 Escherichia coli P0304816.4 gecP03048164.contig.136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 95167 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95106 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 95045 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 94984 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 94923 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 94862 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 94801 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 94740 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 94679 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 94618 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 94557 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 94496 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 94435 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 94374 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 94313 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94252 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94191 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94130 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 94069 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94008 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 93947 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATTCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 121752-120869 **** Predicted by CRISPRDetect 2.4 *** >NZ_AQBB01000136.1 Escherichia coli P0304816.4 gecP03048164.contig.136, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 121751 29 100.0 32 ............................. CCGATAAAATGCAAAAAACGCGGCGTTTTTTG 121690 29 100.0 32 ............................. AGGCATCGCATGTCGCCATTCCGATCGGGGAC 121629 29 100.0 32 ............................. GGGGTATGAGGGCGCGATCGTGGTACAGGAGG 121568 29 100.0 32 ............................. CGTAGCGCCGCAGAGCATTTACGCGAGTTATT 121507 29 100.0 32 ............................. GAGCAACAAAACAATGAATCCAACGGATTGCC 121446 29 100.0 32 ............................. CCCTCCAGTACTGTGATGCGATCTTTAAGTCC 121385 29 100.0 32 ............................. AACTCTCACCGGAGCAGAAAAAAAGAAACCAG 121324 29 100.0 32 ............................. GCGGACGGCAAAACAATCGGGAGTCTGGACAA 121263 29 100.0 32 ............................. ACTATCGGCGCTGTTCAGTTGGGACAGAAACA 121202 29 100.0 32 ............................. TTATCGCACCGTGTTAAACCGGCAGAAAAACA 121141 29 100.0 32 ............................. CGTGCCTTCGACTTTGCGGATCACGTCGTCTT 121080 29 100.0 32 ............................. ACGGGGACGAATCACAGCAGCGTTATCGTGAT 121019 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 120958 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 120897 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //