Array 1 6310-7009 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPE010000023.1 Nocardia veterana strain DSM 44445 W7670_23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 6310 29 96.6 33 ............................G AACCCGGTTGCGCGGTACGGGCCGCCATCGAGA 6372 29 100.0 32 ............................. CCAGCCGACGAGTCCGGCTGGTTCGTCCACAT 6433 29 100.0 32 ............................. GCCTTGTTGTACGGATTCGACCCAGACAGCAC 6494 29 100.0 32 ............................. CGCGTCCGCAAACTGAACAACCCTGAGCGCCT 6555 29 96.6 32 .......................T..... CGGCCGGACCCGGGTGAGAGCTTGCGGCTGGC 6616 29 100.0 32 ............................. GTCCAGCACAACATGTTCCCGGATCCGGCGTT 6677 29 100.0 32 ............................. TCGCCGGAACCGATCGGGCATCGTCCGTCACC 6738 29 96.6 32 .......................T..... CTGCTGGCCCGCACCTACGGGAGACCGCAGAT 6799 29 96.6 32 ........................G.... TTCCCGGACACGATCATCCGGACCAGGGTCAG 6860 29 93.1 31 T.............T.............. TGCTGCTGTGCAGCGCTCACGCGCTGGCGTG 6920 29 86.2 32 ............T.T......G...T... GAGCTGGTTGGTGCCGGCGGGGGCGGCCGCAT 6981 29 82.8 0 .C.......A..TC...........T... | ========== ====== ====== ====== ============================= ================================= ================== 12 29 95.7 32 GTGCTCCCCGCGCACGCGGGGATGAGCCC # Left flank : GCGACGAGTGGGACACCGACATCGTCGAATTGTGGGACCGCAAAGGTAATGTCGCTGCCGGTATCTCGTACGACGACGAGGAAGTTCCGTGGTAGTCCTCGTCCTCAGTGCCTGCCCGGCAGGCCTGCGTGGTCACCTCACCAGATGGTTGCTCGAGATCAGTCCCGGTGTATTCGTTGGAATCCTCACTACCCGCGTCCGCGACCTGGCCTGGCAACGTGTCGTCGAACTGTCGAAAGACGGGCGCGCCATCATGATCTACTCCACCCGCTCGGAACAAAGACTGGCGTTCAAGGTGCACCGCCACGAGTGGGAACCCGTAGAAACCGACGGTGTCCACCTCATCCGCCGACCGCACCCAGGAAACCAGAAGACCGTGGGCCCTCGAGCGGGTTGGAGCAAGGCCAGCCGATACAGGAAGGCTGGCCGCAACCGACAGACCCGACGGGAAACTGAATGAAAAACCGCCAGGTTCAATGCAAACCTGCATGTCAACAAGT # Right flank : CTCCTTTTCGCCCGTGTTCATGCGGGATGTGATACTCACCCACACTCCGCGTTACGAACGTCGCTACCCGCCACAACCAGAACTCGGGGCCGTCGGTTTCGGCGGATGCGGTGGCGTCCAGGGCGGTTTGCTGCAGGGCGGGCCAGCTTTGGATTCCGTGTTCGCGGTTGGCCCGCTGTGTCTCCTCAGCGGTGGATTGTTCAGGTGTGAGATCGGCGCGGCGTGAGTTCAGCCTCGAGCTCGGTGAGTTCGTCTTCCAGCCAGGCGGTATCCGTCGAGTCTCCTGCGTTGGTGATGCTGGGTGCGGGGCCGTAGATGGTGGAGTGGTCGTCGGCGAGGTGAATGCGGAGTTCGAGGGTGCTGATCGCTTGGACGAGTTCGGTATGGGTGAGCCATGTGAGGCGGATCGGGCGGATCGAACCCACTGTCGCCGTTGGGATGCTGCGGTGAATGGCCTTCGCCCACTGGGTTTTCGGCTGTCATCAGTGCGTCCGCGAAGG # Questionable array : NO Score: 5.74 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCACGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1784-2983 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPE010000071.1 Nocardia veterana strain DSM 44445 W7670_71, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =========================================================================================================== ================== 1784 28 100.0 34 ............................ CTACGAGGGCGACAAAGAGTTCTCGGCGATGCTG 1846 28 100.0 33 ............................ CGCGAGCGAATAAAACTAGGCAGCCAACGCCGG 1907 28 100.0 33 ............................ CGCGCCCCGCTACCCGTGGGGCCGCCGCACCAT 1968 28 100.0 33 ............................ CGGCGGCCAGTGGGGGCTCGACGCCGACGGTTC 2029 28 100.0 33 ............................ CAGTGCGAGGCAATCTGGAATGCCACCGTCCAG 2090 28 100.0 34 ............................ ACACCGCCGATATCGACCTGGTGCTGTCCAGCCA 2152 28 100.0 33 ............................ CTTCGCGCCACCGCGCACGCGGCACAGAACGGC 2213 28 100.0 33 ............................ CCAAAATTGAACTCCGGACGCGCCGGCTGTCGG 2274 28 100.0 33 ............................ CAACCGCAACGAGTCCGACGTGACCAAACTCGA 2335 28 100.0 33 ............................ CCGCTGGCCGCCGGCCCGCACCTCGAACAGGTG 2396 28 96.4 33 ..A......................... CGAGCAACGGGCGAAGGTCTGGGAGGACGTGCT 2457 28 100.0 33 ............................ CGCCAGATCGGCGATATGTGGGGTTGGGGTCGA 2518 28 100.0 33 ............................ CAACGCCGCCGGCACCACCCTGTTCACGGTGCA 2579 28 96.4 33 ............T............... CTCAGCTTCTGTCAACGCAACGGGGCGAACTCG 2640 28 100.0 33 ............................ CGTGCGCCGCGGCGCACGCATCCGGCGTGAATG 2701 28 100.0 34 ............................ CATCACCACCGGATGGATGTTCCGGGACGAACCA 2763 27 96.4 33 ......................-..... CGCCTGGATCGACGGCCGGTCGGTGACCAAGCT 2823 26 82.1 107 ........T..A...--.......G... CCAGGTCCTCGCCGACTCATACGCGCCGGCTGGCCTGCTGCCTGCCACGCGGACACCACACGCAGTGGCGTGCTCCGCGCGGAAGCTAGACCAGACCAACCTGGAGT 2956 27 78.6 0 .....-........A...T..T..G.A. | T [2974] ========== ====== ====== ====== ============================ =========================================================================================================== ================== 19 28 97.4 37 GTGCTCCCCGCGCATGCGGGGATGAGCC # Left flank : CCTCGTCGGTGATACATGGCGCGATGCCGACCACGATGCGATAGACAGGCCACACCTGCTCACCACGGGGATAGCGCGCTACACGTCGAGCGGCATCATCGGGCGTCCCTCGCTGGCAACCGCTACAAAAGGCAAGGCGGCACTGGATAGTTTGGTGACCTCGTTCGCTGATCATCTCAAGATCCTCAACGAGTAACGCATCAGCGGTTGGAATCAGCTGCGGCGCTTTGCTATACGCCATCAACAGCCTGACCATAGGCAGTCGAGACCAGAAACTAATCTGCGGGCGCGGCGTCCCGCGGTGCCGGAGCTGCTCGGCACGGCCCTTCCGGCGAGTGAAAGTGAGGCCGCGCGGGTTCGTCGGCTAGGAGACTCGACCTCGAGGGTTGGCACGAAAGGCCCACTAGTGTCGAAGATGCTCGTCGTCACGCCGGGGTGAAAGGAACTCGAAAGTGAATGAAATTCGACCATTGCGTACATAACATCGCTGGTCATGAAGT # Right flank : CTGCTACACCCGGCGGCAGATCGTTGGCACGGCCTATTCAGCCTATTCAGTTGAGAATGGCAAAGTCTGGCGGATAACAAAGACTTCGAGGCATTAAACCTGTTGGGCTACATACTGTTACAGACGAAGCACGCGGTTTTCGGCCGTCTAGGTTTAAATCGACGGTGCCCTGTCGGCGGTCGGTTGTACGCTGCGGTTCGTCCGCAGTGCTGGACTGCGGGGACCGGTGAGGGGGGGTTCGGTGCTCTCGGATGCGGCCTTGTCTGCCTGGGCGAAGAGCGACCGGGAGGGCGGCAGTCTTTCGCTGTTTCGGCATCTTTCGGATTCGGTGGCTGTGGCTGACCTGGTCTGGGATCGGTGGTTGCCGGGGCACACGAAGGAAGCGATGTCGGCCGGATTGCCGGCGGGCGTCGAGGATGGCCGGCTGTTGTTTCGATGGTTGGCCGGTGTGCACGACATCGGGAAGTTGACTCCGGCTTTTGCGTGCCAGGTCTGGCCTT # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:-0.34, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCATGCGGGGATGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGATGAGCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //